Wall clock time and date at job start Tue Mar 31 2020 11:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00027 * 2 1 4 4 H 1.09003 * 112.88650 * 21.83715 * 3 2 1 5 5 C 1.53948 * 113.66142 * 250.49668 * 3 2 1 6 6 C 1.53949 * 87.29582 * 220.79273 * 5 3 2 7 7 H 1.09003 * 113.66643 * 139.29371 * 6 5 3 8 8 N 1.46503 * 113.66233 * 270.25871 * 6 5 3 9 9 C 1.34771 * 120.00142 * 255.49564 * 8 6 5 10 10 O 1.21603 * 120.00223 * 359.97438 * 9 8 6 11 11 C 1.47435 * 120.00101 * 179.97438 * 9 8 6 12 12 C 1.39227 * 120.27772 * 354.11660 * 11 9 8 13 13 C 1.38230 * 120.08902 * 180.02562 * 12 11 9 14 14 C 1.38830 * 120.67595 * 0.02562 * 13 12 11 15 15 C 1.37597 * 120.56969 * 359.74594 * 14 13 12 16 16 C 1.40707 * 119.88218 * 0.48930 * 15 14 13 17 17 C 1.40884 * 120.32847 * 179.78704 * 16 15 14 18 18 H 1.08007 * 120.00080 * 146.49959 * 17 16 15 19 19 C 1.40271 * 120.00324 * 326.49409 * 17 16 15 20 20 N 1.30635 * 119.99916 * 335.79491 * 19 17 16 21 21 Si 1.86802 * 120.00063 * 155.78766 * 19 17 16 22 22 H 1.48501 * 109.46864 * 180.02562 * 21 19 17 23 23 H 1.48491 * 109.47101 * 60.00450 * 21 19 17 24 24 H 1.48506 * 109.47217 * 300.00202 * 21 19 17 25 25 C 1.52906 * 86.78487 * 24.73158 * 6 5 3 26 26 C 1.52904 * 121.14441 * 209.38008 * 25 6 5 27 27 C 1.53951 * 86.78548 * 209.37545 * 26 25 6 28 28 C 1.52913 * 121.13932 * 100.81229 * 25 6 5 29 29 H 1.09009 * 109.46929 * 300.00266 * 1 2 3 30 30 H 1.08995 * 109.47089 * 59.99766 * 1 2 3 31 31 H 1.08996 * 109.46959 * 180.02562 * 1 2 3 32 32 H 1.08996 * 113.58476 * 106.18723 * 5 3 2 33 33 H 1.09006 * 113.64991 * 335.40338 * 5 3 2 34 34 H 0.97004 * 119.99711 * 75.49399 * 8 6 5 35 35 H 1.08000 * 119.96072 * 0.02562 * 12 11 9 36 36 H 1.07997 * 119.65774 * 180.02562 * 13 12 11 37 37 H 1.07999 * 119.71349 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.05864 * 180.25302 * 15 14 13 39 39 H 0.96996 * 119.99712 * 354.13424 * 20 19 17 40 40 H 1.08996 * 113.66126 * 323.85129 * 26 25 6 41 41 H 1.09010 * 113.65964 * 94.90518 * 26 25 6 42 42 H 1.09004 * 113.58226 * 270.13680 * 27 26 25 43 43 H 1.08990 * 113.58161 * 139.33797 * 27 26 25 44 44 H 1.08997 * 113.66366 * 265.10158 * 28 25 6 45 45 H 1.08999 * 113.65986 * 36.15992 * 28 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3311 2.0718 0.3735 5 6 2.6916 1.6783 -1.3292 6 6 3.8158 2.3131 -0.4906 7 1 4.8149 2.1237 -0.8833 8 7 3.5868 3.7248 -0.1728 9 6 4.2717 4.6828 -0.8281 10 8 5.0801 4.3755 -1.6830 11 6 4.0408 6.1035 -0.5086 12 6 3.0323 6.4685 0.3791 13 6 2.8188 7.8016 0.6755 14 6 3.6019 8.7903 0.0953 15 6 4.6091 8.4603 -0.7822 16 6 4.8438 7.1110 -1.1046 17 6 5.8697 6.7628 -2.0053 18 1 6.4142 5.8395 -1.8729 19 6 6.1838 7.6151 -3.0742 20 7 5.2869 8.4480 -3.5307 21 14 7.8846 7.5593 -3.8446 22 1 7.9614 8.5514 -4.9469 23 1 8.1395 6.1993 -4.3835 24 1 8.9051 7.8833 -2.8155 25 6 3.4030 1.3572 0.6291 26 6 3.5931 1.7321 2.0992 27 6 3.7469 0.2252 2.3739 28 6 4.1926 0.0777 0.9077 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.1282 2.4000 -1.9206 33 1 3.0159 0.8157 -1.9114 34 1 2.9422 3.9700 0.5094 35 1 2.4158 5.7090 0.8369 36 1 2.0349 8.0769 1.3654 37 1 3.4214 9.8272 0.3375 38 1 5.2160 9.2359 -1.2256 39 1 4.3796 8.4188 -3.1891 40 1 4.4995 2.3065 2.2905 41 1 2.7067 2.1719 2.5567 42 1 2.8047 -0.2761 2.5957 43 1 4.5312 -0.0090 3.0937 44 1 3.7854 -0.8042 0.4132 45 1 5.2676 0.1871 0.7642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601631988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:29 Heat of formation + Delta-G solvation = -39.392474 kcal Electronic energy + Delta-G solvation = -26595.892577 eV Core-core repulsion = 22964.576150 eV Total energy + Delta-G solvation = -3631.316427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.08057 -40.45260 -38.66905 -37.89976 -36.21578 -35.73301 -33.55496 -31.65979 -31.10324 -27.86137 -27.14466 -26.75049 -25.81006 -25.16916 -23.98542 -22.85503 -21.88257 -21.09649 -20.06958 -19.31588 -18.22106 -17.64781 -16.96308 -16.75183 -16.62185 -16.33198 -16.01280 -15.78253 -15.59168 -15.37953 -15.30177 -14.56583 -14.29011 -14.00555 -13.93528 -13.67609 -13.54580 -13.31473 -13.17328 -12.94882 -12.73702 -12.71352 -12.49684 -12.19226 -12.04950 -11.99966 -11.92470 -11.54659 -11.37359 -11.29119 -11.07953 -10.91370 -10.39128 -10.34080 -9.91933 -9.59709 -9.52709 -9.12880 -6.45629 0.40736 0.91321 1.45912 1.61046 1.75812 2.23494 2.27375 2.29808 2.70220 2.78670 3.29616 3.46312 3.55947 3.69214 3.78219 3.85648 3.93161 4.18945 4.24123 4.25078 4.42382 4.50344 4.53030 4.54840 4.59005 4.73061 4.77449 4.84605 4.86843 4.87928 4.88734 4.95344 4.96031 5.07891 5.14363 5.16857 5.39864 5.42541 5.54839 5.60738 5.66334 5.71628 5.90298 5.96865 6.20049 6.26476 6.34039 6.68354 6.84958 6.91687 7.60600 7.99701 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003744 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.837715 B = 7476.256595 C = 8185.869376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.384 6.384 3 C 0.103 3.897 4 H 0.100 0.900 5 C -0.168 4.168 6 C 0.131 3.869 7 H 0.074 0.926 8 N -0.705 5.705 9 C 0.561 3.439 10 O -0.579 6.579 11 C -0.286 4.286 12 C -0.040 4.040 13 C -0.246 4.246 14 C -0.071 4.071 15 C -0.226 4.226 16 C 0.098 3.902 17 C -0.513 4.513 18 H 0.080 0.920 19 C 0.002 3.998 20 N -0.808 5.808 21 Si 1.112 2.888 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.259 1.259 25 C -0.102 4.102 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.106 4.106 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.405 0.595 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.281 0.719 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 -13.352 10.626 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.302 6.302 3 C 0.045 3.955 4 H 0.118 0.882 5 C -0.207 4.207 6 C 0.025 3.975 7 H 0.092 0.908 8 N -0.357 5.357 9 C 0.355 3.645 10 O -0.460 6.460 11 C -0.290 4.290 12 C -0.058 4.058 13 C -0.265 4.265 14 C -0.090 4.090 15 C -0.246 4.246 16 C 0.094 3.906 17 C -0.540 4.540 18 H 0.098 0.902 19 C -0.215 4.215 20 N -0.431 5.431 21 Si 0.929 3.071 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.183 1.183 25 C -0.104 4.104 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.144 4.144 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.242 0.758 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.952 -12.993 8.861 17.195 hybrid contribution -1.423 -0.085 0.911 1.692 sum -8.374 -13.077 9.772 18.348 Atomic orbital electron populations 1.22978 0.79914 1.03864 1.00600 1.87899 1.20970 1.26861 1.94493 1.23276 0.92347 0.85545 0.94313 0.88220 1.23948 0.98159 1.00671 0.97969 1.21406 0.98578 0.80405 0.97131 0.90773 1.45333 1.44288 1.04360 1.41738 1.18439 0.79577 0.86190 0.80303 1.90660 1.37185 1.83665 1.34477 1.19748 1.04932 0.91977 1.12387 1.21120 0.94187 0.96799 0.93714 1.20786 1.05436 0.92283 1.08020 1.21147 0.93827 0.99413 0.94569 1.21178 1.03236 0.95386 1.04780 1.17846 0.89813 0.91599 0.91326 1.21082 1.15306 1.07481 1.10167 0.90189 1.28439 1.08057 0.89774 0.95182 1.70501 1.04912 1.31434 1.36228 0.83077 0.69483 0.77832 0.76676 1.18779 1.19656 1.18320 1.23167 0.95530 0.97233 0.94422 1.22721 1.02464 0.97709 0.93390 1.22723 1.02118 0.95280 0.95767 1.22484 0.98958 0.95533 0.97412 0.92840 0.94051 0.88236 0.92147 0.88756 0.75829 0.84913 0.84614 0.85846 0.89428 0.90708 0.90469 0.90115 0.89329 0.90535 0.90453 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.86 113.37 1.23 1.56 16 2 O -0.38 -7.98 9.90 -148.98 -1.48 -9.46 16 3 C 0.10 2.26 4.10 30.89 0.13 2.39 16 4 H 0.10 1.92 7.90 -2.39 -0.02 1.90 16 5 C -0.17 -4.65 7.71 31.23 0.24 -4.41 16 6 C 0.13 4.05 4.08 45.28 0.18 4.24 16 7 H 0.07 2.74 7.54 -2.39 -0.02 2.72 16 8 N -0.70 -24.17 5.02 -444.41 -2.23 -26.40 16 9 C 0.56 26.28 7.72 86.67 0.67 26.95 16 10 O -0.58 -32.18 13.22 -4.04 -0.05 -32.24 16 11 C -0.29 -13.79 5.92 -19.70 -0.12 -13.91 16 12 C -0.04 -1.53 9.52 22.51 0.21 -1.32 16 13 C -0.25 -9.22 10.03 22.41 0.22 -8.99 16 14 C -0.07 -2.97 10.01 22.26 0.22 -2.75 16 15 C -0.23 -11.44 8.07 22.72 0.18 -11.26 16 16 C 0.10 5.37 5.13 -21.11 -0.11 5.26 16 17 C -0.51 -29.80 7.63 23.41 0.18 -29.62 16 18 H 0.08 4.94 5.96 -2.91 -0.02 4.93 16 19 C 0.00 0.11 4.92 85.37 0.42 0.53 16 20 N -0.81 -45.24 12.61 21.88 0.28 -44.96 16 21 Si 1.11 47.20 30.00 68.60 2.06 49.26 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 25 C -0.10 -2.35 0.92 -52.31 -0.05 -2.40 16 26 C -0.13 -2.49 7.43 30.88 0.23 -2.26 16 27 C -0.12 -2.11 8.08 31.23 0.25 -1.85 16 28 C -0.11 -2.22 7.55 30.89 0.23 -1.99 16 29 H 0.05 0.64 8.14 -2.38 -0.02 0.63 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.40 11.34 6.61 -92.71 -0.61 10.72 16 35 H 0.13 3.91 6.44 -2.91 -0.02 3.89 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.09 4.63 7.07 -2.91 -0.02 4.61 16 39 H 0.28 16.28 6.96 -92.71 -0.65 15.64 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.63 7.65 -2.39 -0.02 1.61 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.77 365.40 3.42 -65.35 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: 0.51 Total: 38.29 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.34 Total: -39.85 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -1.96 Total: -71.36 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.53 Total: -41.69 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.06 Total: 49.26 kcal Total: -68.77 3.42 -65.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601631988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.953 kcal (2) G-P(sol) polarization free energy of solvation -68.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds