Wall clock time and date at job start Tue Mar 31 2020 11:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34231 * 116.99761 * 2 1 4 4 O 1.20835 * 120.00016 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00075 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.62765 * 300.40066 * 5 3 2 7 7 C 1.52893 * 109.63101 * 61.00022 * 5 3 2 8 8 C 1.50721 * 109.94365 * 170.13166 * 7 5 3 9 9 C 1.38675 * 118.48168 * 163.20484 * 8 7 5 10 10 C 1.38039 * 120.34813 * 179.79750 * 9 8 7 11 11 C 1.38263 * 119.82523 * 359.97438 * 10 9 8 12 12 C 1.38014 * 119.86702 * 0.07439 * 11 10 9 13 13 C 1.37830 * 121.66227 * 343.12092 * 8 7 5 14 14 C 1.50622 * 121.85559 * 0.33813 * 13 8 7 15 15 N 1.46633 * 110.50030 * 342.59222 * 14 13 8 16 16 C 1.46898 * 111.00392 * 289.03778 * 15 14 13 17 17 C 1.53003 * 109.46941 * 307.14758 * 16 15 14 18 18 C 1.50702 * 115.54799 * 305.95836 * 17 16 15 19 19 H 1.08005 * 119.99885 * 144.50030 * 18 17 16 20 20 C 1.37874 * 119.99928 * 324.49552 * 18 17 16 21 21 N 1.31517 * 120.00606 * 339.80828 * 20 18 17 22 22 Si 1.86803 * 119.99897 * 159.80820 * 20 18 17 23 23 H 1.48498 * 109.47308 * 5.00060 * 22 20 18 24 24 H 1.48494 * 109.47318 * 125.00427 * 22 20 18 25 25 H 1.48506 * 109.47021 * 245.00363 * 22 20 18 26 26 C 1.52995 * 117.50099 * 160.28955 * 17 16 15 27 27 C 1.52997 * 117.50211 * 91.62510 * 17 16 15 28 28 H 1.09003 * 109.46882 * 59.99792 * 1 2 3 29 29 H 1.08998 * 109.46782 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47127 * 299.99989 * 1 2 3 31 31 H 1.09001 * 109.39673 * 290.27316 * 7 5 3 32 32 H 1.09002 * 109.39206 * 49.97967 * 7 5 3 33 33 H 1.07997 * 119.82790 * 359.77931 * 9 8 7 34 34 H 1.08001 * 120.08993 * 180.02562 * 10 9 8 35 35 H 1.07993 * 120.06366 * 180.02562 * 11 10 9 36 36 H 1.08004 * 119.80587 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.26778 * 222.33286 * 14 13 8 38 38 H 1.08992 * 109.27264 * 102.85749 * 14 13 8 39 39 H 1.08997 * 109.46965 * 67.14177 * 16 15 14 40 40 H 1.08998 * 109.47182 * 187.14494 * 16 15 14 41 41 H 0.96997 * 120.00506 * 185.34298 * 21 20 18 42 42 H 1.09001 * 117.49676 * 359.97438 * 26 17 16 43 43 H 1.08996 * 117.50398 * 145.01646 * 26 17 16 44 44 H 1.08993 * 117.50110 * 214.98056 * 27 17 16 45 45 H 1.09003 * 117.49453 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9588 0.7755 0.8864 7 6 4.1164 0.6044 -1.2586 8 6 5.5911 0.8870 -1.3891 9 6 6.3425 0.0970 -2.2460 10 6 7.6955 0.3246 -2.3981 11 6 8.3045 1.3461 -1.6929 12 6 7.5577 2.1322 -0.8391 13 6 6.1982 1.9035 -0.6835 14 6 5.4266 2.7850 0.2633 15 7 3.9875 2.6851 0.0005 16 6 3.6371 3.3391 -1.2673 17 6 4.1807 4.7693 -1.2706 18 6 3.7733 5.6222 -0.0968 19 1 4.4647 6.3445 0.3116 20 6 2.5181 5.4804 0.4556 21 7 1.5518 4.9236 -0.2415 22 14 2.1897 6.0794 2.1943 23 1 3.3958 6.7713 2.7155 24 1 1.0431 7.0229 2.1846 25 1 1.8692 4.9198 3.0650 26 6 4.3391 5.4617 -2.6257 27 6 5.5765 4.9932 -1.8558 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.9586 -0.4721 -1.1937 32 1 3.5945 0.9932 -2.1330 33 1 5.8668 -0.7008 -2.7970 34 1 8.2766 -0.2930 -3.0669 35 1 9.3627 1.5278 -1.8093 36 1 8.0345 2.9296 -0.2883 37 1 5.7452 3.8191 0.1323 38 1 5.6275 2.4745 1.2885 39 1 4.0741 2.7824 -2.0962 40 1 2.5528 3.3622 -1.3766 41 1 0.6507 4.8936 0.1164 42 1 4.0565 4.8982 -3.5149 43 1 4.1491 6.5341 -2.6683 44 1 6.1999 5.7576 -1.3922 45 1 6.1076 4.1215 -2.2381 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602766417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:36 Heat of formation + Delta-G solvation = -18.988341 kcal Electronic energy + Delta-G solvation = -28307.451706 eV Core-core repulsion = 24677.020068 eV Total energy + Delta-G solvation = -3630.431638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01028 -40.69362 -38.80960 -37.42206 -36.76896 -33.92819 -33.60760 -31.96589 -30.73346 -28.51939 -28.00646 -27.17411 -25.45704 -24.26799 -23.17992 -22.72786 -21.94732 -21.16084 -19.88151 -18.56652 -17.87881 -17.60118 -17.22634 -16.89553 -16.54141 -16.15818 -16.07630 -15.81797 -15.55372 -15.17118 -14.64236 -14.57417 -14.39423 -14.10790 -13.85893 -13.56342 -13.38140 -13.26575 -12.96878 -12.83162 -12.77465 -12.47187 -12.42012 -12.32839 -12.19849 -12.07724 -11.86391 -11.78012 -11.55831 -11.14887 -11.00080 -10.83870 -10.28908 -9.73958 -9.58169 -9.37904 -8.90243 -7.85112 -5.82290 0.51303 0.55710 1.42306 1.45177 1.50262 1.55903 1.78277 2.57339 2.91055 3.08772 3.34748 3.72973 3.80393 3.85694 3.98052 4.04445 4.16276 4.24349 4.31515 4.36818 4.38649 4.40104 4.51834 4.61385 4.66547 4.71226 4.73098 4.74295 4.86320 4.90637 4.94257 4.97596 5.10073 5.18337 5.20846 5.25654 5.45174 5.49777 5.59011 5.62915 5.68656 5.80026 5.81833 6.14562 6.20182 6.38625 6.43184 6.68406 7.04211 7.13043 7.74792 9.16530 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.007250 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.066913 B = 3861.119854 C = 5499.239955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.441 3.559 4 O -0.472 6.472 5 C 0.094 3.906 6 H 0.125 0.875 7 C -0.094 4.094 8 C -0.093 4.093 9 C -0.121 4.121 10 C -0.126 4.126 11 C -0.123 4.123 12 C -0.123 4.123 13 C -0.109 4.109 14 C 0.090 3.910 15 N -0.496 5.496 16 C 0.113 3.887 17 C 0.053 3.947 18 C -0.517 4.517 19 H 0.039 0.961 20 C 0.071 3.929 21 N -0.845 5.845 22 Si 0.923 3.077 23 H -0.273 1.273 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.217 4.217 27 C -0.187 4.187 28 H 0.051 0.949 29 H 0.136 0.864 30 H 0.050 0.950 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.082 0.918 39 H -0.001 1.001 40 H 0.090 0.910 41 H 0.252 0.748 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.440 -14.823 -2.210 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.281 3.719 4 O -0.355 6.355 5 C -0.016 4.016 6 H 0.143 0.857 7 C -0.132 4.132 8 C -0.093 4.093 9 C -0.139 4.139 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.141 4.141 13 C -0.111 4.111 14 C -0.037 4.037 15 N -0.218 5.218 16 C -0.014 4.014 17 C 0.052 3.948 18 C -0.554 4.554 19 H 0.058 0.942 20 C -0.136 4.136 21 N -0.478 5.478 22 Si 0.752 3.248 23 H -0.198 1.198 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.255 4.255 27 C -0.224 4.224 28 H 0.070 0.930 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.017 0.983 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.704 -14.358 -1.780 15.945 hybrid contribution -0.402 0.548 0.250 0.724 sum 6.302 -13.810 -1.529 15.257 Atomic orbital electron populations 1.23382 0.75642 1.05156 1.01678 1.86447 1.24190 1.32952 1.84849 1.23947 0.92329 0.81705 0.73928 1.90934 1.66619 1.36138 1.41822 1.21309 0.87343 0.91971 1.01016 0.85718 1.20879 0.92587 1.02562 0.97174 1.19511 0.94776 0.96469 0.98550 1.21259 0.94654 0.99752 0.98220 1.21363 0.94604 0.98420 1.00036 1.21372 1.00783 0.95501 0.96423 1.21233 0.93052 1.00208 0.99614 1.20521 0.95370 0.96350 0.98851 1.21231 0.85267 1.00096 0.97135 1.62094 1.14353 1.09508 1.35804 1.21540 1.02089 0.91627 0.86189 1.18895 0.92212 0.92790 0.90872 1.20220 0.99277 1.21361 1.14515 0.94248 1.25092 0.96002 0.94396 0.98101 1.69916 0.99947 1.41508 1.36449 0.86097 0.77214 0.77057 0.84425 1.19811 1.22017 1.21889 1.22964 1.05122 0.99478 0.97961 1.22881 0.91446 1.01820 1.06247 0.93024 0.84601 0.93126 0.87225 0.91675 0.84455 0.83563 0.83906 0.85563 0.88673 0.89946 0.98341 0.89202 0.93847 0.91788 0.91636 0.90839 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 10.56 113.37 1.20 2.07 16 2 O -0.37 -11.30 10.51 -51.43 -0.54 -11.84 16 3 C 0.44 16.82 7.00 71.24 0.50 17.32 16 4 O -0.47 -22.37 12.71 21.94 0.28 -22.10 16 5 C 0.09 3.27 2.71 44.08 0.12 3.39 16 6 H 0.13 3.84 8.05 -2.39 -0.02 3.82 16 7 C -0.09 -2.76 4.41 29.82 0.13 -2.63 16 8 C -0.09 -2.70 5.09 -19.85 -0.10 -2.80 16 9 C -0.12 -2.88 9.66 22.33 0.22 -2.66 16 10 C -0.13 -2.66 10.05 22.23 0.22 -2.44 16 11 C -0.12 -2.74 10.05 22.22 0.22 -2.51 16 12 C -0.12 -3.31 9.41 22.34 0.21 -3.10 16 13 C -0.11 -3.41 4.54 -19.87 -0.09 -3.50 16 14 C 0.09 3.32 5.01 85.58 0.43 3.74 16 15 N -0.50 -20.77 4.17 -880.35 -3.67 -24.44 16 16 C 0.11 5.25 3.25 86.30 0.28 5.53 16 17 C 0.05 2.61 1.02 -52.93 -0.05 2.56 16 18 C -0.52 -28.50 8.27 25.60 0.21 -28.29 16 19 H 0.04 2.22 7.89 -2.91 -0.02 2.20 16 20 C 0.07 3.94 5.01 84.65 0.42 4.37 16 21 N -0.84 -48.89 9.76 21.45 0.21 -48.68 16 22 Si 0.92 45.90 29.59 68.60 2.03 47.92 16 23 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 25 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 26 C -0.22 -10.23 9.96 30.62 0.30 -9.92 16 27 C -0.19 -8.01 8.02 30.62 0.25 -7.77 16 28 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 29 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 2.15 6.72 -2.39 -0.02 2.14 16 33 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.10 3.91 5.01 -2.39 -0.01 3.89 16 38 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.00 -0.06 5.35 -2.39 -0.01 -0.07 16 40 H 0.09 4.89 4.34 -2.39 -0.01 4.88 16 41 H 0.25 14.54 8.32 -92.71 -0.77 13.77 16 42 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.08 3.17 7.10 -2.39 -0.02 3.16 16 Total: -1.00 -66.54 352.21 3.77 -62.78 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.99 Total: 22.99 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 4.47 Total: -26.64 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -3.46 Total: -73.12 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.26 Total: -33.93 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -66.54 3.77 -62.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602766417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.788 kcal (2) G-P(sol) polarization free energy of solvation -66.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds