Wall clock time and date at job start Tue Mar 31 2020 11:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34719 * 116.99631 * 2 1 4 4 O 1.21466 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.47726 * 119.99724 * 179.97438 * 3 2 1 6 6 C 1.39652 * 120.23105 * 359.97438 * 5 3 2 7 7 C 1.37710 * 119.67531 * 180.10945 * 6 5 3 8 8 C 1.38859 * 120.56669 * 359.97438 * 7 6 5 9 9 C 1.38014 * 120.06945 * 359.84524 * 8 7 6 10 10 C 1.38456 * 119.88107 * 0.24561 * 9 8 7 11 11 C 1.50654 * 121.83578 * 180.48556 * 9 8 7 12 12 N 1.46628 * 110.48943 * 342.35018 * 11 9 8 13 13 C 1.46904 * 111.00102 * 289.21411 * 12 11 9 14 14 C 1.52998 * 109.47235 * 292.35306 * 13 12 11 15 15 C 1.50699 * 115.54734 * 305.97936 * 14 13 12 16 16 H 1.08002 * 119.99618 * 144.30074 * 15 14 13 17 17 C 1.37881 * 120.00164 * 324.29521 * 15 14 13 18 18 N 1.31513 * 119.99862 * 351.50182 * 17 15 14 19 19 Si 1.86802 * 119.99881 * 171.50360 * 17 15 14 20 20 H 1.48499 * 109.46873 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46963 * 119.99769 * 19 17 15 22 22 H 1.48499 * 109.47020 * 240.00115 * 19 17 15 23 23 C 1.52998 * 117.49847 * 160.31128 * 14 13 12 24 24 C 1.52996 * 117.49848 * 91.65078 * 14 13 12 25 25 C 1.46934 * 110.18279 * 52.59902 * 12 11 9 26 26 C 1.50762 * 118.33860 * 179.80408 * 8 7 6 27 27 H 1.09001 * 109.46787 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47363 * 299.99253 * 1 2 3 29 29 H 1.09006 * 109.47576 * 59.99774 * 1 2 3 30 30 H 1.08002 * 120.16357 * 0.08119 * 6 5 3 31 31 H 1.07996 * 119.72142 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.87199 * 179.85241 * 10 9 8 33 33 H 1.08997 * 109.30380 * 102.65856 * 11 9 8 34 34 H 1.08997 * 109.30345 * 222.24964 * 11 9 8 35 35 H 1.09003 * 109.46542 * 52.35415 * 13 12 11 36 36 H 1.08996 * 109.46982 * 172.34736 * 13 12 11 37 37 H 0.97001 * 119.99957 * 185.00685 * 18 17 15 38 38 H 1.09008 * 117.49614 * 359.97438 * 23 14 13 39 39 H 1.08997 * 117.50377 * 145.01841 * 23 14 13 40 40 H 1.09004 * 117.49637 * 214.97817 * 24 14 13 41 41 H 1.09003 * 117.50166 * 359.97174 * 24 14 13 42 42 H 1.08994 * 109.50045 * 168.91628 * 25 12 11 43 43 H 1.09000 * 109.63240 * 48.41566 * 25 12 11 44 44 H 1.09001 * 109.38430 * 283.26854 * 26 8 7 45 45 H 1.08992 * 109.39027 * 43.05616 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3041 0.1096 0.0017 7 6 5.6785 0.1950 0.0045 8 6 6.3092 1.4322 0.0057 9 6 5.5591 2.5907 0.0009 10 6 4.1765 2.5173 0.0000 11 6 6.2016 3.9533 -0.0088 12 7 7.6055 3.8618 0.4044 13 6 7.7136 3.5573 1.8375 14 6 7.2076 4.7496 2.6518 15 6 7.8529 6.0741 2.3346 16 1 7.2679 6.9814 2.3678 17 6 9.1899 6.1275 2.0021 18 7 9.9409 5.0547 2.1229 19 14 9.9345 7.7238 1.3801 20 1 8.8865 8.7749 1.3366 21 1 11.0250 8.1503 2.2935 22 1 10.4841 7.5153 0.0164 23 6 6.8011 4.4917 4.1041 24 6 5.7291 4.7602 3.0449 25 6 8.3068 2.8540 -0.4027 26 6 7.8164 1.4671 0.0133 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 3.8204 -0.8561 0.0008 31 1 6.2711 -0.7078 0.0049 32 1 3.5897 3.4240 -0.0014 33 1 6.1487 4.3695 -1.0149 34 1 5.6684 4.6080 0.6804 35 1 7.1122 2.6780 2.0684 36 1 8.7557 3.3611 2.0895 37 1 10.8954 5.1099 1.9589 38 1 6.8937 3.4724 4.4792 39 1 6.9998 5.2801 4.8300 40 1 5.2231 5.7252 3.0744 41 1 5.1166 3.9179 2.7229 42 1 9.3800 2.9305 -0.2281 43 1 8.0923 3.0166 -1.4589 44 1 8.1784 1.2412 1.0163 45 1 8.1991 0.7234 -0.6854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602795762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:12 Heat of formation + Delta-G solvation = -21.361666 kcal Electronic energy + Delta-G solvation = -26972.436795 eV Core-core repulsion = 23341.902242 eV Total energy + Delta-G solvation = -3630.534553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.72272 -39.85236 -37.37369 -36.48212 -35.50763 -32.44956 -32.01313 -31.15692 -29.24525 -27.82612 -26.44940 -25.26051 -24.32911 -22.99655 -22.18938 -21.18883 -21.06236 -19.60678 -18.55315 -17.56345 -17.10110 -16.44533 -16.15746 -15.44798 -15.20583 -14.73913 -14.55719 -14.32804 -14.14480 -13.87094 -13.51291 -13.46045 -13.29485 -13.00053 -12.75847 -12.33546 -12.13392 -11.96247 -11.58747 -11.42214 -11.20193 -10.99216 -10.95619 -10.91310 -10.85253 -10.65948 -10.42882 -10.40586 -10.28102 -9.93306 -9.26234 -8.93323 -8.76720 -8.62316 -8.42506 -7.95653 -7.27334 -5.87032 -3.89751 0.74520 1.44097 2.53150 2.58138 3.36005 3.44705 3.48778 3.81174 4.50054 4.63347 4.72362 4.85537 4.90402 4.98363 4.98696 5.02530 5.19304 5.27750 5.30213 5.45102 5.56237 5.64012 5.68402 5.73890 6.00791 6.04249 6.07741 6.13786 6.15355 6.27298 6.32049 6.37728 6.40419 6.47585 6.53631 6.66103 6.70652 6.75668 6.88736 6.97270 7.00338 7.20824 7.38244 7.61292 7.67032 8.02869 8.14034 8.20384 8.58757 9.04300 9.70569 11.14807 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.020064 B = 0.003817 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.199182 B = 7333.986691 C = 7904.407395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.511 3.489 4 O -0.508 6.508 5 C -0.139 4.139 6 C -0.072 4.072 7 C -0.136 4.136 8 C -0.033 4.033 9 C -0.108 4.108 10 C -0.047 4.047 11 C 0.083 3.917 12 N -0.483 5.483 13 C 0.101 3.899 14 C 0.067 3.933 15 C -0.474 4.474 16 H 0.054 0.946 17 C 0.089 3.911 18 N -0.878 5.878 19 Si 0.890 3.110 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.283 1.283 23 C -0.206 4.206 24 C -0.220 4.220 25 C 0.056 3.944 26 C -0.125 4.125 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.102 0.898 35 H -0.007 1.007 36 H 0.117 0.883 37 H 0.256 0.744 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 -12.555 -6.049 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.357 3.643 4 O -0.397 6.397 5 C -0.140 4.140 6 C -0.090 4.090 7 C -0.154 4.154 8 C -0.033 4.033 9 C -0.110 4.110 10 C -0.066 4.066 11 C -0.045 4.045 12 N -0.202 5.202 13 C -0.026 4.026 14 C 0.066 3.934 15 C -0.511 4.511 16 H 0.072 0.928 17 C -0.114 4.114 18 N -0.515 5.515 19 Si 0.719 3.281 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.245 4.245 24 C -0.257 4.257 25 C -0.073 4.073 26 C -0.164 4.164 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.011 0.989 36 H 0.135 0.865 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.463 -11.842 -6.225 16.387 hybrid contribution -0.448 -0.086 -0.020 0.456 sum -9.910 -11.928 -6.245 16.718 Atomic orbital electron populations 1.23257 0.76246 1.03571 1.02639 1.86545 1.23361 1.32939 1.84567 1.21326 0.89282 0.81260 0.72462 1.90828 1.66829 1.36000 1.46011 1.18936 0.88403 0.95230 1.11430 1.21238 0.93758 0.97491 0.96519 1.21071 0.94174 0.97422 1.02769 1.20025 0.96395 0.92324 0.94555 1.20783 0.92940 0.98129 0.99138 1.21241 0.94130 0.96549 0.94661 1.21387 0.90456 0.90723 1.01983 1.62326 1.08518 1.44259 1.05062 1.21823 1.03165 0.92832 0.84759 1.18960 0.88750 0.95554 0.90092 1.20352 0.94434 0.90587 1.45694 0.92781 1.24725 0.96971 0.95683 0.94015 1.69776 1.04886 1.27674 1.49190 0.86585 0.78855 0.83976 0.78668 1.20080 1.21641 1.20949 1.22959 1.06661 0.99107 0.95782 1.22971 0.94482 0.99959 1.08321 1.22161 1.00152 0.87535 0.97405 1.21315 0.90633 1.01299 1.03132 0.88104 0.91831 0.91898 0.84986 0.85562 0.84666 0.90420 0.88020 0.98928 0.86517 0.93400 0.92154 0.90512 0.90879 0.91883 0.89732 0.91805 0.89573 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.33 9.83 -40.54 -0.40 -4.73 16 3 C 0.51 7.48 7.90 34.61 0.27 7.75 16 4 O -0.51 -8.58 16.13 -19.24 -0.31 -8.89 16 5 C -0.14 -2.03 5.87 -105.06 -0.62 -2.65 16 6 C -0.07 -0.92 9.62 -39.25 -0.38 -1.30 16 7 C -0.14 -1.76 9.63 -39.54 -0.38 -2.15 16 8 C -0.03 -0.49 5.07 -104.44 -0.53 -1.02 16 9 C -0.11 -1.76 5.18 -104.65 -0.54 -2.31 16 10 C -0.05 -0.74 9.20 -39.07 -0.36 -1.10 16 11 C 0.08 1.52 5.38 -5.15 -0.03 1.49 16 12 N -0.48 -9.72 4.60 -236.39 -1.09 -10.80 16 13 C 0.10 2.22 2.97 -3.82 -0.01 2.21 16 14 C 0.07 1.60 1.46 -155.66 -0.23 1.37 16 15 C -0.47 -12.50 8.73 -34.44 -0.30 -12.80 16 16 H 0.05 1.47 7.83 -52.49 -0.41 1.06 16 17 C 0.09 2.32 5.19 -17.82 -0.09 2.23 16 18 N -0.88 -23.02 10.69 55.43 0.59 -22.43 16 19 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.21 -4.70 9.96 -26.69 -0.27 -4.97 16 24 C -0.22 -4.80 8.18 -26.70 -0.22 -5.02 16 25 C 0.06 0.95 6.00 -3.87 -0.02 0.93 16 26 C -0.13 -1.82 5.17 -27.92 -0.14 -1.97 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.13 1.39 7.62 -52.49 -0.40 0.99 16 31 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.14 2.13 7.64 -52.49 -0.40 1.73 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.10 2.01 5.51 -51.93 -0.29 1.73 16 35 H -0.01 -0.16 5.87 -51.93 -0.31 -0.46 16 36 H 0.12 2.85 5.92 -51.93 -0.31 2.54 16 37 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 38 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 39 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.31 8.03 -51.93 -0.42 0.90 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 43 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 44 H 0.09 1.33 7.07 -51.93 -0.37 0.97 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 361.36 15.07 5.45 5.45 Total: -1.00 -28.71 361.36 -10.23 -38.94 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.67 Total: 4.51 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.78 Total: -17.91 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: -0.49 Total: -33.23 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.71 Total: -13.61 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.71 -10.23 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602795762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.583 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds