Wall clock time and date at job start Tue Mar 31 2020 11:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34719 * 116.99631 * 2 1 4 4 O 1.21466 * 120.00169 * 0.02562 * 3 2 1 5 5 C 1.47726 * 119.99724 * 179.97438 * 3 2 1 6 6 C 1.39652 * 120.23105 * 359.97438 * 5 3 2 7 7 C 1.37710 * 119.67531 * 180.10945 * 6 5 3 8 8 C 1.38859 * 120.56669 * 359.97438 * 7 6 5 9 9 C 1.38014 * 120.06945 * 359.84524 * 8 7 6 10 10 C 1.38456 * 119.88107 * 0.24561 * 9 8 7 11 11 C 1.50654 * 121.83578 * 180.48556 * 9 8 7 12 12 N 1.46628 * 110.48943 * 342.35018 * 11 9 8 13 13 C 1.46904 * 111.00102 * 289.21411 * 12 11 9 14 14 C 1.52998 * 109.47235 * 292.35306 * 13 12 11 15 15 C 1.50699 * 115.54734 * 305.97936 * 14 13 12 16 16 H 1.08002 * 119.99618 * 144.30074 * 15 14 13 17 17 C 1.37881 * 120.00164 * 324.29521 * 15 14 13 18 18 N 1.31513 * 119.99862 * 351.50182 * 17 15 14 19 19 Si 1.86802 * 119.99881 * 171.50360 * 17 15 14 20 20 H 1.48499 * 109.46873 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46963 * 119.99769 * 19 17 15 22 22 H 1.48499 * 109.47020 * 240.00115 * 19 17 15 23 23 C 1.52998 * 117.49847 * 160.31128 * 14 13 12 24 24 C 1.52996 * 117.49848 * 91.65078 * 14 13 12 25 25 C 1.46934 * 110.18279 * 52.59902 * 12 11 9 26 26 C 1.50762 * 118.33860 * 179.80408 * 8 7 6 27 27 H 1.09001 * 109.46787 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47363 * 299.99253 * 1 2 3 29 29 H 1.09006 * 109.47576 * 59.99774 * 1 2 3 30 30 H 1.08002 * 120.16357 * 0.08119 * 6 5 3 31 31 H 1.07996 * 119.72142 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.87199 * 179.85241 * 10 9 8 33 33 H 1.08997 * 109.30380 * 102.65856 * 11 9 8 34 34 H 1.08997 * 109.30345 * 222.24964 * 11 9 8 35 35 H 1.09003 * 109.46542 * 52.35415 * 13 12 11 36 36 H 1.08996 * 109.46982 * 172.34736 * 13 12 11 37 37 H 0.97001 * 119.99957 * 185.00685 * 18 17 15 38 38 H 1.09008 * 117.49614 * 359.97438 * 23 14 13 39 39 H 1.08997 * 117.50377 * 145.01841 * 23 14 13 40 40 H 1.09004 * 117.49637 * 214.97817 * 24 14 13 41 41 H 1.09003 * 117.50166 * 359.97174 * 24 14 13 42 42 H 1.08994 * 109.50045 * 168.91628 * 25 12 11 43 43 H 1.09000 * 109.63240 * 48.41566 * 25 12 11 44 44 H 1.09001 * 109.38430 * 283.26854 * 26 8 7 45 45 H 1.08992 * 109.39027 * 43.05616 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3041 0.1096 0.0017 7 6 5.6785 0.1950 0.0045 8 6 6.3092 1.4322 0.0057 9 6 5.5591 2.5907 0.0009 10 6 4.1765 2.5173 0.0000 11 6 6.2016 3.9533 -0.0088 12 7 7.6055 3.8618 0.4044 13 6 7.7136 3.5573 1.8375 14 6 7.2076 4.7496 2.6518 15 6 7.8529 6.0741 2.3346 16 1 7.2679 6.9814 2.3678 17 6 9.1899 6.1275 2.0021 18 7 9.9409 5.0547 2.1229 19 14 9.9345 7.7238 1.3801 20 1 8.8865 8.7749 1.3366 21 1 11.0250 8.1503 2.2935 22 1 10.4841 7.5153 0.0164 23 6 6.8011 4.4917 4.1041 24 6 5.7291 4.7602 3.0449 25 6 8.3068 2.8540 -0.4027 26 6 7.8164 1.4671 0.0133 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 3.8204 -0.8561 0.0008 31 1 6.2711 -0.7078 0.0049 32 1 3.5897 3.4240 -0.0014 33 1 6.1487 4.3695 -1.0149 34 1 5.6684 4.6080 0.6804 35 1 7.1122 2.6780 2.0684 36 1 8.7557 3.3611 2.0895 37 1 10.8954 5.1099 1.9589 38 1 6.8937 3.4724 4.4792 39 1 6.9998 5.2801 4.8300 40 1 5.2231 5.7252 3.0744 41 1 5.1166 3.9179 2.7229 42 1 9.3800 2.9305 -0.2281 43 1 8.0923 3.0166 -1.4589 44 1 8.1784 1.2412 1.0163 45 1 8.1991 0.7234 -0.6854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602795762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:11 Heat of formation + Delta-G solvation = -35.575001 kcal Electronic energy + Delta-G solvation = -26973.053132 eV Core-core repulsion = 23341.902242 eV Total energy + Delta-G solvation = -3631.150889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85176 -41.05587 -38.83542 -37.58419 -37.03352 -34.00555 -33.64712 -32.39676 -30.43429 -28.67572 -28.05886 -27.20677 -25.51003 -24.28283 -23.40678 -22.83146 -22.32127 -21.17814 -20.06514 -18.75655 -18.17299 -17.88204 -17.43018 -16.80763 -16.57470 -16.26986 -16.12327 -15.55880 -15.45571 -15.37499 -14.77480 -14.63404 -14.42767 -14.33610 -14.28341 -13.41665 -13.37760 -13.24941 -13.06499 -12.89472 -12.80427 -12.56956 -12.49283 -12.27992 -12.24769 -12.13942 -11.86166 -11.84980 -11.75410 -11.53946 -11.10817 -10.84960 -10.44749 -9.89108 -9.86049 -9.63132 -8.76506 -7.85932 -5.94730 -0.37540 0.33835 1.41863 1.46600 1.51846 1.59425 1.62870 2.54598 2.70032 3.12585 3.43092 3.61247 3.76040 3.77461 3.83760 3.91532 4.12299 4.28177 4.30150 4.31039 4.31223 4.39608 4.52396 4.54480 4.61741 4.68508 4.74387 4.77722 4.87798 4.90712 4.93911 4.99854 5.04470 5.07918 5.14433 5.17105 5.22946 5.25114 5.36714 5.43922 5.55258 5.61831 5.72326 5.86319 6.12315 6.47061 6.61055 6.62570 6.72142 7.03350 7.66547 9.13028 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.020064 B = 0.003817 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.199182 B = 7333.986691 C = 7904.407395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.513 3.487 4 O -0.540 6.540 5 C -0.149 4.149 6 C -0.059 4.059 7 C -0.127 4.127 8 C -0.042 4.042 9 C -0.122 4.122 10 C -0.059 4.059 11 C 0.089 3.911 12 N -0.507 5.507 13 C 0.124 3.876 14 C 0.045 3.955 15 C -0.494 4.494 16 H 0.036 0.964 17 C 0.057 3.943 18 N -0.887 5.887 19 Si 0.940 3.060 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.281 1.281 23 C -0.209 4.209 24 C -0.200 4.200 25 C 0.055 3.945 26 C -0.115 4.115 27 H 0.139 0.861 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.078 0.922 35 H -0.004 1.004 36 H 0.092 0.908 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.121 -15.173 -6.841 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.360 3.640 4 O -0.431 6.431 5 C -0.150 4.150 6 C -0.076 4.076 7 C -0.145 4.145 8 C -0.042 4.042 9 C -0.124 4.124 10 C -0.078 4.078 11 C -0.039 4.039 12 N -0.227 5.227 13 C -0.004 4.004 14 C 0.045 3.955 15 C -0.531 4.531 16 H 0.054 0.946 17 C -0.144 4.144 18 N -0.525 5.525 19 Si 0.768 3.232 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.207 1.207 23 C -0.247 4.247 24 C -0.237 4.237 25 C -0.073 4.073 26 C -0.153 4.153 27 H 0.157 0.843 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.180 0.820 31 H 0.179 0.821 32 H 0.141 0.859 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.014 0.986 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.918 -14.481 -7.018 18.903 hybrid contribution -0.386 0.691 0.216 0.820 sum -10.304 -13.791 -6.802 18.510 Atomic orbital electron populations 1.23615 0.74227 1.06057 1.02565 1.86526 1.25275 1.31276 1.83849 1.21372 0.89338 0.81554 0.71735 1.90814 1.67487 1.37198 1.47651 1.19059 0.88796 0.95474 1.11642 1.21568 0.93716 0.97903 0.94458 1.21396 0.94453 0.97621 1.01026 1.20172 0.96521 0.92760 0.94774 1.20543 0.93165 0.97567 1.01126 1.21156 0.93974 0.96968 0.95697 1.21179 0.89446 0.91885 1.01413 1.62207 1.09932 1.46180 1.04364 1.21411 1.01213 0.91906 0.85856 1.19094 0.89981 0.95496 0.90956 1.20468 0.94871 0.91115 1.46621 0.94609 1.25191 0.97193 0.97900 0.94143 1.69882 1.04904 1.28476 1.49220 0.85826 0.77949 0.81300 0.78174 1.20595 1.21312 1.20733 1.22967 1.06963 0.99495 0.95318 1.22851 0.93705 1.00075 1.07079 1.22153 0.99014 0.88543 0.97577 1.21208 0.90437 1.00339 1.03360 0.84317 0.92136 0.91861 0.82048 0.82139 0.85909 0.90043 0.90396 0.98578 0.89053 0.93369 0.90951 0.91339 0.91280 0.90863 0.91168 0.90561 0.90526 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.68 9.83 -56.28 -0.55 -8.23 16 3 C 0.51 14.38 7.90 70.33 0.56 14.94 16 4 O -0.54 -18.20 16.13 19.94 0.32 -17.88 16 5 C -0.15 -4.11 5.87 -20.15 -0.12 -4.23 16 6 C -0.06 -1.29 9.62 22.49 0.22 -1.07 16 7 C -0.13 -2.79 9.63 22.29 0.21 -2.58 16 8 C -0.04 -1.17 5.07 -19.75 -0.10 -1.27 16 9 C -0.12 -3.92 5.18 -19.88 -0.10 -4.02 16 10 C -0.06 -1.85 9.20 22.60 0.21 -1.64 16 11 C 0.09 3.30 5.38 85.59 0.46 3.76 16 12 N -0.51 -20.58 4.60 -901.81 -4.14 -24.73 16 13 C 0.12 5.48 2.97 86.30 0.26 5.73 16 14 C 0.05 2.20 1.46 -52.93 -0.08 2.13 16 15 C -0.49 -26.68 8.73 25.60 0.22 -26.46 16 16 H 0.04 2.01 7.83 -2.91 -0.02 1.98 16 17 C 0.06 3.03 5.19 84.66 0.44 3.47 16 18 N -0.89 -46.99 10.69 21.45 0.23 -46.76 16 19 Si 0.94 43.34 29.55 68.60 2.03 45.37 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 C -0.21 -9.58 9.96 30.62 0.30 -9.27 16 24 C -0.20 -8.82 8.18 30.62 0.25 -8.57 16 25 C 0.06 1.83 6.00 86.25 0.52 2.35 16 26 C -0.12 -3.10 5.17 29.82 0.15 -2.94 16 27 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.16 2.61 7.62 -2.91 -0.02 2.59 16 31 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 32 H 0.12 4.04 7.64 -2.91 -0.02 4.02 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.08 3.20 5.51 -2.39 -0.01 3.19 16 35 H 0.00 -0.16 5.87 -2.39 -0.01 -0.17 16 36 H 0.09 4.53 5.92 -2.39 -0.01 4.51 16 37 H 0.26 13.08 8.32 -92.71 -0.77 12.31 16 38 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 39 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 41 H 0.07 3.06 8.03 -2.39 -0.02 3.04 16 42 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.08 2.29 8.04 -2.39 -0.02 2.27 16 44 H 0.08 2.24 7.07 -2.39 -0.02 2.22 16 45 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -62.51 361.36 3.47 -59.04 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.99 Total: 21.25 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 4.60 Total: -28.05 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -3.91 Total: -71.49 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.23 Total: -26.11 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -62.51 3.47 -59.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602795762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.462 kcal (2) G-P(sol) polarization free energy of solvation -62.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds