Wall clock time and date at job start Tue Mar 31 2020 11:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34719 * 116.99977 * 2 1 4 4 O 1.21463 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.47729 * 119.99827 * 179.97438 * 3 2 1 6 6 C 1.39475 * 119.98249 * 359.95806 * 5 3 2 7 7 C 1.37922 * 119.65712 * 179.97438 * 6 5 3 8 8 C 1.38180 * 120.03353 * 0.08201 * 7 6 5 9 9 C 1.38857 * 120.70170 * 0.02562 * 8 7 6 10 10 C 1.37579 * 119.81256 * 359.83386 * 9 8 7 11 11 C 1.50697 * 121.73685 * 180.25212 * 10 9 8 12 12 C 1.52889 * 109.89498 * 343.31632 * 11 10 9 13 13 N 1.46941 * 108.60899 * 50.28471 * 12 11 10 14 14 C 1.46905 * 111.00108 * 52.12787 * 13 12 11 15 15 C 1.53000 * 109.46909 * 161.13260 * 14 13 12 16 16 C 1.50690 * 115.55409 * 305.31650 * 15 14 13 17 17 H 1.08002 * 120.00287 * 115.17330 * 16 15 14 18 18 C 1.37876 * 120.00549 * 295.17790 * 16 15 14 19 19 N 1.31510 * 120.00609 * 174.57956 * 18 16 15 20 20 Si 1.86800 * 119.99456 * 354.57973 * 18 16 15 21 21 H 1.48500 * 109.47402 * 93.43175 * 20 18 16 22 22 H 1.48499 * 109.47180 * 213.42914 * 20 18 16 23 23 H 1.48502 * 109.47494 * 333.42815 * 20 18 16 24 24 C 1.52999 * 117.49347 * 159.64761 * 15 14 13 25 25 C 1.53006 * 117.49493 * 90.99064 * 15 14 13 26 26 C 1.46619 * 110.19030 * 288.75019 * 13 12 11 27 27 H 1.09000 * 109.47195 * 300.00383 * 1 2 3 28 28 H 1.09007 * 109.46699 * 60.00270 * 1 2 3 29 29 H 1.08996 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.17020 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.98466 * 180.02562 * 7 6 5 32 32 H 1.07998 * 119.65040 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.38756 * 103.42658 * 11 10 9 34 34 H 1.09005 * 109.38384 * 223.21258 * 11 10 9 35 35 H 1.09002 * 109.63822 * 169.90510 * 12 11 10 36 36 H 1.08999 * 109.63719 * 290.50172 * 12 11 10 37 37 H 1.08999 * 109.47106 * 281.13629 * 14 13 12 38 38 H 1.09001 * 109.46905 * 41.13338 * 14 13 12 39 39 H 0.97004 * 119.99952 * 179.97438 * 19 18 16 40 40 H 1.09000 * 117.50383 * 0.02562 * 24 15 14 41 41 H 1.09005 * 117.49932 * 145.02414 * 24 15 14 42 42 H 1.08999 * 117.49305 * 214.97891 * 25 15 14 43 43 H 1.09003 * 117.49660 * 359.97135 * 25 15 14 44 44 H 1.09004 * 109.27294 * 292.28796 * 26 13 12 45 45 H 1.09005 * 109.24640 * 172.79863 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.2981 0.1076 0.0020 7 6 5.6750 0.1876 0.0020 8 6 6.2961 1.4220 0.0023 9 6 5.5482 2.5919 0.0031 10 6 4.1741 2.5253 0.0002 11 6 3.3202 3.7670 -0.0046 12 6 4.1593 4.9770 0.4071 13 7 5.3852 4.9950 -0.4028 14 6 5.0714 4.9040 -1.8351 15 6 6.2712 5.3880 -2.6518 16 6 6.7751 6.7669 -2.3120 17 1 7.7631 6.8931 -1.8945 18 6 5.9749 7.8676 -2.5339 19 7 6.3704 9.0583 -2.1401 20 14 4.3290 7.6672 -3.3942 21 1 3.2581 7.4942 -2.3801 22 1 4.0469 8.8752 -4.2106 23 1 4.3733 6.4732 -4.2760 24 6 6.3550 4.9457 -4.1141 25 6 7.3048 4.3427 -3.0761 26 6 6.2798 3.9088 0.0090 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.8104 -0.8559 0.0031 31 1 6.2681 -0.7150 0.0027 32 1 7.3747 1.4774 0.0027 33 1 2.9207 3.9275 -1.0060 34 1 2.4962 3.6422 0.6979 35 1 3.5935 5.8920 0.2314 36 1 4.4188 4.9006 1.4630 37 1 4.8498 3.8685 -2.0934 38 1 4.2052 5.5272 -2.0575 39 1 5.8075 9.8327 -2.2966 40 1 5.5551 4.3103 -4.4944 41 1 6.7750 5.6520 -4.8303 42 1 8.3493 4.6527 -3.1097 43 1 7.1302 3.3104 -2.7729 44 1 6.6507 4.1097 1.0141 45 1 7.1219 3.8556 -0.6811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602839264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:53 Heat of formation + Delta-G solvation = -13.955274 kcal Electronic energy + Delta-G solvation = -27348.650544 eV Core-core repulsion = 23718.437156 eV Total energy + Delta-G solvation = -3630.213388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05730 -39.79577 -37.62928 -36.65058 -35.82293 -32.61209 -31.93775 -31.17039 -29.60752 -27.82787 -27.06060 -25.20227 -24.30430 -23.46454 -22.64651 -21.48227 -20.92041 -19.63203 -18.60061 -17.65106 -17.09179 -16.55975 -16.22627 -15.87915 -15.56458 -15.06882 -14.71374 -14.58319 -14.31861 -13.85069 -13.68554 -13.44305 -13.27420 -13.04799 -12.74611 -12.42016 -12.41245 -12.12996 -11.98097 -11.75986 -11.55505 -11.42086 -11.34190 -10.99246 -10.87518 -10.59316 -10.51806 -10.35271 -10.07286 -10.02910 -9.38129 -9.00135 -8.92035 -8.59779 -8.48842 -8.29601 -7.54968 -5.94051 -3.90120 0.61633 1.27883 2.44503 2.51108 3.36268 3.46685 3.52242 3.65425 4.42402 4.54657 4.55805 4.68576 4.79102 4.86267 4.93303 4.94401 5.03725 5.11489 5.22448 5.34360 5.39254 5.45894 5.53371 5.63824 5.72960 5.84135 5.91946 5.97168 6.00231 6.08618 6.14102 6.18358 6.24375 6.29285 6.33910 6.37039 6.43736 6.49872 6.56626 6.68335 6.79268 6.82242 7.13622 7.18491 7.61487 7.67928 7.78630 7.95870 8.67505 9.08940 9.71162 11.18926 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.004673 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.217078 B = 5990.009974 C = 6766.246716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.506 3.494 4 O -0.497 6.497 5 C -0.136 4.136 6 C -0.068 4.068 7 C -0.140 4.140 8 C -0.075 4.075 9 C -0.116 4.116 10 C -0.006 4.006 11 C -0.127 4.127 12 C 0.047 3.953 13 N -0.492 5.492 14 C 0.091 3.909 15 C 0.012 3.988 16 C -0.453 4.453 17 H 0.074 0.926 18 C 0.082 3.918 19 N -0.902 5.902 20 Si 0.863 3.137 21 H -0.281 1.281 22 H -0.296 1.296 23 H -0.254 1.254 24 C -0.197 4.197 25 C -0.188 4.188 26 C 0.091 3.909 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.017 0.983 38 H 0.061 0.939 39 H 0.261 0.739 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 -20.062 5.786 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.352 3.648 4 O -0.386 6.386 5 C -0.137 4.137 6 C -0.086 4.086 7 C -0.158 4.158 8 C -0.094 4.094 9 C -0.118 4.118 10 C -0.006 4.006 11 C -0.165 4.165 12 C -0.081 4.081 13 N -0.211 5.211 14 C -0.036 4.036 15 C 0.010 3.990 16 C -0.491 4.491 17 H 0.092 0.908 18 C -0.119 4.119 19 N -0.541 5.541 20 Si 0.692 3.308 21 H -0.208 1.208 22 H -0.223 1.223 23 H -0.178 1.178 24 C -0.235 4.235 25 C -0.225 4.225 26 C -0.038 4.038 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.781 -19.072 5.869 21.075 hybrid contribution -1.692 -0.912 -0.684 2.040 sum -8.474 -19.984 5.185 22.317 Atomic orbital electron populations 1.23256 0.76137 1.03583 1.02684 1.86537 1.23429 1.32969 1.84617 1.21314 0.89254 0.81306 0.72924 1.90820 1.66983 1.35321 1.45499 1.18985 0.88659 0.94593 1.11457 1.21312 0.94058 0.97390 0.95883 1.21045 0.94256 0.97969 1.02557 1.21446 1.00464 0.91735 0.95763 1.20743 0.92968 0.98163 0.99894 1.19719 0.93396 0.93678 0.93830 1.21551 0.98431 0.92399 1.04156 1.22355 0.90937 0.96833 0.98009 1.62304 1.13279 1.41706 1.03820 1.21849 0.98210 0.96529 0.87055 1.19399 0.93367 0.95345 0.90846 1.20081 1.02265 0.86185 1.40545 0.90762 1.24782 0.97127 0.95066 0.94923 1.69895 1.38185 0.98964 1.47008 0.87105 0.85244 0.77972 0.80509 1.20796 1.22286 1.17783 1.23049 1.01675 1.03781 0.94990 1.22814 0.96643 0.96644 1.06391 1.21311 0.96309 0.83745 1.02450 0.91844 0.91827 0.88105 0.84857 0.85314 0.85172 0.89890 0.88049 0.89991 0.90783 0.96460 0.92106 0.92943 0.91783 0.89571 0.89823 0.91469 0.89595 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.16 9.80 -40.54 -0.40 -4.56 16 3 C 0.51 7.13 7.85 34.61 0.27 7.40 16 4 O -0.50 -8.00 12.93 -19.24 -0.25 -8.25 16 5 C -0.14 -1.90 5.88 -104.90 -0.62 -2.52 16 6 C -0.07 -0.78 9.61 -39.24 -0.38 -1.16 16 7 C -0.14 -1.48 10.03 -39.72 -0.40 -1.88 16 8 C -0.08 -0.90 9.64 -39.37 -0.38 -1.28 16 9 C -0.12 -1.69 5.07 -104.66 -0.53 -2.22 16 10 C -0.01 -0.09 5.13 -104.20 -0.53 -0.62 16 11 C -0.13 -2.10 3.73 -27.94 -0.10 -2.20 16 12 C 0.05 0.82 5.93 -3.86 -0.02 0.80 16 13 N -0.49 -9.65 4.64 -236.37 -1.10 -10.75 16 14 C 0.09 1.93 3.19 -3.82 -0.01 1.92 16 15 C 0.01 0.27 0.72 -155.66 -0.11 0.16 16 16 C -0.45 -12.45 9.08 -34.45 -0.31 -12.76 16 17 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 18 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 19 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 20 Si 0.86 21.81 24.90 -169.99 -4.23 17.57 16 21 H -0.28 -7.05 7.07 56.52 0.40 -6.65 16 22 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.25 -6.08 5.77 56.52 0.33 -5.75 16 24 C -0.20 -4.20 8.14 -26.69 -0.22 -4.42 16 25 C -0.19 -3.73 8.47 -26.69 -0.23 -3.96 16 26 C 0.09 1.48 5.45 -5.16 -0.03 1.45 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.13 1.25 7.60 -52.49 -0.40 0.85 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.08 1.50 7.13 -51.93 -0.37 1.13 16 34 H 0.10 1.64 6.00 -51.93 -0.31 1.33 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.07 1.15 8.05 -51.93 -0.42 0.74 16 37 H 0.02 0.35 6.23 -51.93 -0.32 0.03 16 38 H 0.06 1.39 4.78 -51.93 -0.25 1.14 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 42 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.07 1.20 7.78 -51.93 -0.40 0.79 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.10 1.70 5.77 -51.93 -0.30 1.40 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -31.86 351.08 -9.18 -41.04 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.64 Total: 4.16 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.63 Total: -17.66 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.32 Total: -37.59 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.65 Total: -12.81 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.23 Total: 17.57 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.86 -9.18 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602839264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.080 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds