Wall clock time and date at job start Tue Mar 31 2020 11:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34719 * 116.99977 * 2 1 4 4 O 1.21463 * 119.99801 * 359.97438 * 3 2 1 5 5 C 1.47729 * 119.99827 * 179.97438 * 3 2 1 6 6 C 1.39475 * 119.98249 * 359.95806 * 5 3 2 7 7 C 1.37922 * 119.65712 * 179.97438 * 6 5 3 8 8 C 1.38180 * 120.03353 * 0.08201 * 7 6 5 9 9 C 1.38857 * 120.70170 * 0.02562 * 8 7 6 10 10 C 1.37579 * 119.81256 * 359.83386 * 9 8 7 11 11 C 1.50697 * 121.73685 * 180.25212 * 10 9 8 12 12 C 1.52889 * 109.89498 * 343.31632 * 11 10 9 13 13 N 1.46941 * 108.60899 * 50.28471 * 12 11 10 14 14 C 1.46905 * 111.00108 * 52.12787 * 13 12 11 15 15 C 1.53000 * 109.46909 * 161.13260 * 14 13 12 16 16 C 1.50690 * 115.55409 * 305.31650 * 15 14 13 17 17 H 1.08002 * 120.00287 * 115.17330 * 16 15 14 18 18 C 1.37876 * 120.00549 * 295.17790 * 16 15 14 19 19 N 1.31510 * 120.00609 * 174.57956 * 18 16 15 20 20 Si 1.86800 * 119.99456 * 354.57973 * 18 16 15 21 21 H 1.48500 * 109.47402 * 93.43175 * 20 18 16 22 22 H 1.48499 * 109.47180 * 213.42914 * 20 18 16 23 23 H 1.48502 * 109.47494 * 333.42815 * 20 18 16 24 24 C 1.52999 * 117.49347 * 159.64761 * 15 14 13 25 25 C 1.53006 * 117.49493 * 90.99064 * 15 14 13 26 26 C 1.46619 * 110.19030 * 288.75019 * 13 12 11 27 27 H 1.09000 * 109.47195 * 300.00383 * 1 2 3 28 28 H 1.09007 * 109.46699 * 60.00270 * 1 2 3 29 29 H 1.08996 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.17020 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.98466 * 180.02562 * 7 6 5 32 32 H 1.07998 * 119.65040 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.38756 * 103.42658 * 11 10 9 34 34 H 1.09005 * 109.38384 * 223.21258 * 11 10 9 35 35 H 1.09002 * 109.63822 * 169.90510 * 12 11 10 36 36 H 1.08999 * 109.63719 * 290.50172 * 12 11 10 37 37 H 1.08999 * 109.47106 * 281.13629 * 14 13 12 38 38 H 1.09001 * 109.46905 * 41.13338 * 14 13 12 39 39 H 0.97004 * 119.99952 * 179.97438 * 19 18 16 40 40 H 1.09000 * 117.50383 * 0.02562 * 24 15 14 41 41 H 1.09005 * 117.49932 * 145.02414 * 24 15 14 42 42 H 1.08999 * 117.49305 * 214.97891 * 25 15 14 43 43 H 1.09003 * 117.49660 * 359.97135 * 25 15 14 44 44 H 1.09004 * 109.27294 * 292.28796 * 26 13 12 45 45 H 1.09005 * 109.24640 * 172.79863 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.2981 0.1076 0.0020 7 6 5.6750 0.1876 0.0020 8 6 6.2961 1.4220 0.0023 9 6 5.5482 2.5919 0.0031 10 6 4.1741 2.5253 0.0002 11 6 3.3202 3.7670 -0.0046 12 6 4.1593 4.9770 0.4071 13 7 5.3852 4.9950 -0.4028 14 6 5.0714 4.9040 -1.8351 15 6 6.2712 5.3880 -2.6518 16 6 6.7751 6.7669 -2.3120 17 1 7.7631 6.8931 -1.8945 18 6 5.9749 7.8676 -2.5339 19 7 6.3704 9.0583 -2.1401 20 14 4.3290 7.6672 -3.3942 21 1 3.2581 7.4942 -2.3801 22 1 4.0469 8.8752 -4.2106 23 1 4.3733 6.4732 -4.2760 24 6 6.3550 4.9457 -4.1141 25 6 7.3048 4.3427 -3.0761 26 6 6.2798 3.9088 0.0090 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.8104 -0.8559 0.0031 31 1 6.2681 -0.7150 0.0027 32 1 7.3747 1.4774 0.0027 33 1 2.9207 3.9275 -1.0060 34 1 2.4962 3.6422 0.6979 35 1 3.5935 5.8920 0.2314 36 1 4.4188 4.9006 1.4630 37 1 4.8498 3.8685 -2.0934 38 1 4.2052 5.5272 -2.0575 39 1 5.8075 9.8327 -2.2966 40 1 5.5551 4.3103 -4.4944 41 1 6.7750 5.6520 -4.8303 42 1 8.3493 4.6527 -3.1097 43 1 7.1302 3.3104 -2.7729 44 1 6.6507 4.1097 1.0141 45 1 7.1219 3.8556 -0.6811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602839264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:52 Heat of formation + Delta-G solvation = -33.363026 kcal Electronic energy + Delta-G solvation = -27349.492127 eV Core-core repulsion = 23718.437156 eV Total energy + Delta-G solvation = -3631.054971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12175 -40.91681 -39.01024 -37.64375 -37.29590 -34.13340 -33.68870 -32.31792 -30.71612 -28.88039 -28.39580 -27.19769 -25.36929 -24.63792 -23.86163 -23.11973 -21.90420 -21.18027 -20.20872 -18.70266 -18.11677 -18.00816 -17.49418 -17.05406 -16.90125 -16.45255 -16.18777 -15.99122 -15.39886 -15.20923 -15.06275 -14.75450 -14.70419 -14.35473 -14.04609 -13.90263 -13.55997 -13.38559 -13.14740 -13.00791 -12.96204 -12.71530 -12.60343 -12.49865 -12.30327 -12.09222 -11.95641 -11.87551 -11.81206 -11.33166 -11.21777 -10.85401 -10.49016 -10.20419 -9.93850 -9.61502 -8.99453 -8.17156 -6.14833 -0.35925 0.31247 1.32860 1.37771 1.44768 1.48676 1.63086 2.42980 2.69454 2.94129 3.21426 3.44217 3.59766 3.65200 3.78564 3.95084 4.06182 4.11210 4.22131 4.27037 4.28910 4.29307 4.37540 4.46687 4.49591 4.52537 4.57979 4.64586 4.66885 4.79508 4.86427 4.87557 4.91425 4.94262 5.00433 5.06704 5.11749 5.24312 5.27914 5.39031 5.43986 5.53747 5.56369 5.81826 5.87432 6.28566 6.31207 6.47908 6.62811 6.87539 7.49409 8.99636 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.004673 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.217078 B = 5990.009974 C = 6766.246716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.505 3.495 4 O -0.529 6.529 5 C -0.151 4.151 6 C -0.058 4.058 7 C -0.127 4.127 8 C -0.071 4.071 9 C -0.129 4.129 10 C -0.028 4.028 11 C -0.112 4.112 12 C 0.050 3.950 13 N -0.521 5.521 14 C 0.107 3.893 15 C -0.017 4.017 16 C -0.440 4.440 17 H 0.033 0.967 18 C 0.030 3.970 19 N -0.953 5.953 20 Si 0.917 3.083 21 H -0.284 1.284 22 H -0.301 1.301 23 H -0.231 1.231 24 C -0.195 4.195 25 C -0.159 4.159 26 C 0.094 3.906 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.138 0.862 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.154 0.846 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -24.566 5.574 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.352 3.648 4 O -0.420 6.420 5 C -0.152 4.152 6 C -0.076 4.076 7 C -0.144 4.144 8 C -0.089 4.089 9 C -0.131 4.131 10 C -0.029 4.029 11 C -0.150 4.150 12 C -0.078 4.078 13 N -0.241 5.241 14 C -0.021 4.021 15 C -0.018 4.018 16 C -0.478 4.478 17 H 0.051 0.949 18 C -0.166 4.166 19 N -0.594 5.594 20 Si 0.744 3.256 21 H -0.210 1.210 22 H -0.229 1.229 23 H -0.153 1.153 24 C -0.233 4.233 25 C -0.196 4.196 26 C -0.034 4.034 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.176 0.824 31 H 0.186 0.814 32 H 0.172 0.828 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.822 -23.630 5.652 25.236 hybrid contribution -1.606 0.371 -0.539 1.734 sum -8.428 -23.259 5.113 25.262 Atomic orbital electron populations 1.23573 0.74378 1.05926 1.02433 1.86519 1.25112 1.31497 1.84001 1.21489 0.89557 0.81549 0.72226 1.90805 1.67660 1.36451 1.47102 1.19099 0.88825 0.94993 1.12322 1.21659 0.94572 0.97377 0.94004 1.21480 0.94046 0.98785 1.00113 1.21738 1.01603 0.91203 0.94351 1.20549 0.92652 0.98124 1.01764 1.19637 0.93713 0.93530 0.96024 1.21287 0.98297 0.92862 1.02598 1.22296 0.90448 0.96578 0.98526 1.62234 1.14499 1.44130 1.03257 1.21563 0.96194 0.96461 0.87911 1.19304 0.95785 0.94087 0.92624 1.20218 1.00317 0.88736 1.38547 0.94875 1.25450 1.00418 0.94760 0.96019 1.70035 1.39830 0.99905 1.49650 0.86242 0.81341 0.78348 0.79705 1.21048 1.22857 1.15340 1.23055 1.02685 1.03852 0.93718 1.22830 0.95741 0.97232 1.03799 1.21238 0.95531 0.84084 1.02553 0.91955 0.92333 0.84429 0.82393 0.81390 0.82784 0.92245 0.88447 0.92161 0.89338 0.95154 0.94449 0.93190 0.89745 0.90581 0.90059 0.88371 0.88886 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -7.41 9.80 -56.29 -0.55 -7.97 16 3 C 0.50 13.57 7.85 70.33 0.55 14.12 16 4 O -0.53 -17.06 12.93 19.96 0.26 -16.80 16 5 C -0.15 -3.89 5.88 -20.04 -0.12 -4.01 16 6 C -0.06 -1.08 9.61 22.49 0.22 -0.87 16 7 C -0.13 -1.99 10.03 22.18 0.22 -1.77 16 8 C -0.07 -1.38 9.64 22.40 0.22 -1.17 16 9 C -0.13 -3.47 5.07 -19.89 -0.10 -3.58 16 10 C -0.03 -0.84 5.13 -19.59 -0.10 -0.94 16 11 C -0.11 -3.75 3.73 29.81 0.11 -3.64 16 12 C 0.05 1.78 5.93 86.26 0.51 2.29 16 13 N -0.52 -20.60 4.64 -901.75 -4.18 -24.78 16 14 C 0.11 4.47 3.19 86.30 0.28 4.75 16 15 C -0.02 -0.75 0.72 -52.93 -0.04 -0.79 16 16 C -0.44 -24.81 9.08 25.60 0.23 -24.58 16 17 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 18 C 0.03 1.75 5.47 84.65 0.46 2.22 16 19 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 20 Si 0.92 46.19 24.90 68.60 1.71 47.90 16 21 H -0.28 -14.29 7.07 99.48 0.70 -13.58 16 22 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 23 H -0.23 -10.60 5.77 99.48 0.57 -10.03 16 24 C -0.19 -7.91 8.14 30.62 0.25 -7.66 16 25 C -0.16 -5.94 8.47 30.62 0.26 -5.68 16 26 C 0.09 2.96 5.45 85.59 0.47 3.43 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.14 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.16 2.14 7.60 -2.91 -0.02 2.12 16 31 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.06 2.22 7.13 -2.39 -0.02 2.20 16 34 H 0.10 3.27 6.00 -2.38 -0.01 3.25 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.09 2.82 8.05 -2.39 -0.02 2.80 16 37 H 0.03 1.19 6.23 -2.39 -0.01 1.17 16 38 H 0.04 1.72 4.78 -2.39 -0.01 1.71 16 39 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 40 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 42 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.10 3.08 7.78 -2.39 -0.02 3.07 16 44 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 45 H 0.09 3.02 5.77 -2.38 -0.01 3.01 16 Total: -1.00 -72.44 351.08 3.00 -69.44 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.86 Total: 18.96 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 4.62 Total: -26.24 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -3.88 Total: -85.29 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.29 Total: -24.76 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.71 Total: 47.90 kcal Total: -72.44 3.00 -69.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602839264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.072 kcal (2) G-P(sol) polarization free energy of solvation -72.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds