Wall clock time and date at job start Tue Mar 31 2020 11:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34227 * 116.99657 * 2 1 4 4 O 1.20826 * 120.00619 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99912 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.29980 * 59.75055 * 5 3 2 7 7 C 1.52890 * 109.39108 * 179.49898 * 5 3 2 8 8 N 1.47155 * 108.51041 * 170.53425 * 7 5 3 9 9 C 1.46899 * 111.00442 * 52.16107 * 8 7 5 10 10 C 1.53000 * 109.47338 * 161.29193 * 9 8 7 11 11 C 1.50703 * 115.55119 * 149.20826 * 10 9 8 12 12 H 1.07998 * 120.00064 * 272.28927 * 11 10 9 13 13 C 1.37875 * 120.00142 * 92.28738 * 11 10 9 14 14 N 1.31515 * 120.00126 * 173.04409 * 13 11 10 15 15 Si 1.86806 * 119.99745 * 353.04602 * 13 11 10 16 16 H 1.48500 * 109.47200 * 93.96988 * 15 13 11 17 17 H 1.48499 * 109.46872 * 213.96395 * 15 13 11 18 18 H 1.48494 * 109.47363 * 333.96757 * 15 13 11 19 19 C 1.52997 * 117.49887 * 3.49909 * 10 9 8 20 20 C 1.52998 * 60.00119 * 252.51103 * 19 10 9 21 21 C 1.46639 * 110.24651 * 288.73972 * 8 7 5 22 22 C 1.50617 * 110.48630 * 52.55576 * 21 8 7 23 23 C 1.38735 * 118.41888 * 162.65300 * 22 21 8 24 24 C 1.38021 * 120.37373 * 179.59919 * 23 22 21 25 25 C 1.38260 * 119.86902 * 0.02562 * 24 23 22 26 26 C 1.38029 * 119.82997 * 0.06138 * 25 24 23 27 27 C 1.37832 * 121.85003 * 342.40638 * 22 21 8 28 28 H 1.08995 * 109.46735 * 59.99649 * 1 2 3 29 29 H 1.08995 * 109.46597 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46797 * 300.00027 * 1 2 3 31 31 H 1.09001 * 109.62937 * 290.23744 * 7 5 3 32 32 H 1.09001 * 109.62793 * 50.82162 * 7 5 3 33 33 H 1.09005 * 109.47051 * 281.29178 * 9 8 7 34 34 H 1.08996 * 109.47060 * 41.28830 * 9 8 7 35 35 H 0.96997 * 119.99791 * 180.02562 * 14 13 11 36 36 H 1.08999 * 117.50091 * 0.02562 * 19 10 9 37 37 H 1.09001 * 117.49992 * 145.02221 * 19 10 9 38 38 H 1.08996 * 117.49804 * 252.51017 * 20 19 10 39 39 H 1.09005 * 117.51710 * 107.48160 * 20 19 10 40 40 H 1.08992 * 109.30019 * 292.23911 * 21 8 7 41 41 H 1.09004 * 109.13200 * 172.76206 * 21 8 7 42 42 H 1.08000 * 119.81527 * 359.58196 * 23 22 21 43 43 H 1.08003 * 120.05854 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.08640 * 180.09130 * 25 24 23 45 45 H 1.08003 * 119.82762 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9537 0.7761 -0.8879 7 6 3.9978 2.7417 -0.0122 8 7 5.4499 2.8036 0.2180 9 6 6.1689 1.9267 -0.7158 10 6 7.6390 2.3457 -0.7798 11 6 8.6200 1.2353 -1.0548 12 1 9.0271 0.6595 -0.2368 13 6 8.9979 0.9545 -2.3507 14 7 9.9535 0.0811 -2.5824 15 14 8.1526 1.8147 -3.7773 16 1 8.9334 3.0176 -4.1629 17 1 8.0681 0.8877 -4.9343 18 1 6.7845 2.2227 -3.3688 19 6 8.0922 3.4762 0.1462 20 6 7.9554 3.7270 -1.3569 21 6 5.7585 2.4559 1.6088 22 6 5.1257 1.1394 1.9759 23 6 5.5923 0.4731 3.0998 24 6 5.0359 -0.7320 3.4779 25 6 4.0080 -1.2798 2.7329 26 6 3.5438 -0.6191 1.6134 27 6 4.1028 0.5915 1.2320 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.7612 3.1845 -0.9796 32 1 3.4782 3.2830 0.7785 33 1 6.0999 0.8947 -0.3715 34 1 5.7240 2.0093 -1.7074 35 1 10.2195 -0.1161 -3.4941 36 1 7.3433 3.9211 0.8013 37 1 9.1002 3.4169 0.5568 38 1 8.8732 3.8326 -1.9351 39 1 7.1162 4.3370 -1.6913 40 1 5.3769 3.2354 2.2681 41 1 6.8395 2.3815 1.7270 42 1 6.3956 0.8998 3.6821 43 1 5.4033 -1.2465 4.3535 44 1 3.5691 -2.2219 3.0264 45 1 2.7406 -1.0468 1.0317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602918061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:10 Heat of formation + Delta-G solvation = -12.351282 kcal Electronic energy + Delta-G solvation = -27510.318398 eV Core-core repulsion = 23880.174564 eV Total energy + Delta-G solvation = -3630.143833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25129 -39.78052 -37.80935 -36.73027 -35.60361 -32.97449 -32.00744 -30.96439 -29.31727 -27.94946 -27.26753 -25.39076 -24.69499 -22.66995 -22.52677 -21.54229 -20.96034 -19.65620 -18.35879 -17.88936 -17.01142 -16.86447 -16.23729 -15.88290 -15.52776 -15.27485 -15.07324 -14.47198 -14.08694 -13.84453 -13.78088 -13.59776 -13.06331 -12.98024 -12.69549 -12.64910 -12.43730 -12.12645 -12.06305 -11.84930 -11.62211 -11.41565 -11.11702 -10.98743 -10.84170 -10.70305 -10.59684 -10.38962 -10.18431 -9.92418 -9.53734 -8.96248 -8.68426 -8.55425 -8.49311 -8.25676 -8.00339 -6.09249 -4.11020 1.35329 1.48924 2.09406 2.57208 3.32057 3.41134 3.46144 3.83579 4.20501 4.45285 4.53423 4.62959 4.83814 4.90078 4.94285 4.97954 5.02933 5.12767 5.17626 5.23046 5.25533 5.33198 5.52290 5.62201 5.67197 5.75487 5.87968 6.00194 6.04924 6.11566 6.15191 6.17906 6.22722 6.33574 6.46989 6.51681 6.60264 6.63992 6.66849 6.70558 6.92303 7.08440 7.16867 7.32632 7.39729 7.49067 7.61028 7.86221 8.54437 8.94929 9.55423 11.02682 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.005030 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.984867 B = 5564.924044 C = 6160.909028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.478 3.522 4 O -0.503 6.503 5 C -0.076 4.076 6 H 0.123 0.877 7 C 0.070 3.930 8 N -0.518 5.518 9 C 0.075 3.925 10 C 0.005 3.995 11 C -0.487 4.487 12 H 0.075 0.925 13 C 0.078 3.922 14 N -0.899 5.899 15 Si 0.881 3.119 16 H -0.280 1.280 17 H -0.297 1.297 18 H -0.257 1.257 19 C -0.179 4.179 20 C -0.195 4.195 21 C 0.080 3.920 22 C -0.084 4.084 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.128 4.128 26 C -0.114 4.114 27 C -0.085 4.085 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.314 -0.154 9.010 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.320 3.680 4 O -0.390 6.390 5 C -0.097 4.097 6 H 0.140 0.860 7 C -0.059 4.059 8 N -0.238 5.238 9 C -0.051 4.051 10 C 0.004 3.996 11 C -0.524 4.524 12 H 0.093 0.907 13 C -0.124 4.124 14 N -0.536 5.536 15 Si 0.710 3.290 16 H -0.206 1.206 17 H -0.224 1.224 18 H -0.182 1.182 19 C -0.216 4.216 20 C -0.232 4.232 21 C -0.048 4.048 22 C -0.086 4.086 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.132 4.132 27 C -0.085 4.085 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.257 0.564 8.755 18.474 hybrid contribution -0.805 -0.621 -0.845 1.322 sum -17.062 -0.057 7.911 18.807 Atomic orbital electron populations 1.23277 0.76778 1.03628 1.02516 1.86561 1.23154 1.33466 1.83979 1.23614 0.91469 0.81299 0.71612 1.90651 1.66953 1.36225 1.45203 1.20843 0.87056 1.02084 0.99700 0.85977 1.22209 0.89362 0.90474 1.03855 1.62821 1.04608 1.52915 1.03406 1.22239 0.94534 0.94228 0.94145 1.19350 0.91411 0.88339 1.00514 1.20313 1.22990 1.15431 0.93711 0.90676 1.24996 0.94058 0.94620 0.98773 1.69915 1.28294 1.34555 1.20814 0.86833 0.81507 0.79035 0.81638 1.20570 1.22402 1.18187 1.22952 1.00769 1.05523 0.92348 1.22826 1.01442 1.02214 0.96683 1.21461 1.02166 0.91287 0.89932 1.20451 0.95269 0.98097 0.94757 1.21066 0.99985 0.95479 0.96743 1.21123 0.96466 0.95849 0.99734 1.21022 0.97791 0.99918 0.95867 1.21520 1.00263 0.94263 0.97149 1.18989 0.97790 0.95964 0.95774 0.91885 0.88145 0.91952 0.89503 0.89682 0.93163 0.91691 0.92654 0.89217 0.90597 0.90336 0.90863 0.89747 0.87322 0.85723 0.86158 0.86228 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -4.27 7.67 -39.25 -0.30 -4.57 16 3 C 0.48 6.67 7.06 36.01 0.25 6.92 16 4 O -0.50 -7.89 15.57 -18.75 -0.29 -8.18 16 5 C -0.08 -1.10 2.16 -92.97 -0.20 -1.31 16 6 H 0.12 1.81 7.19 -51.92 -0.37 1.44 16 7 C 0.07 1.04 4.66 -3.74 -0.02 1.02 16 8 N -0.52 -8.54 4.00 -236.20 -0.94 -9.48 16 9 C 0.08 1.49 3.62 -3.82 -0.01 1.48 16 10 C 0.01 0.12 1.16 -155.66 -0.18 -0.06 16 11 C -0.49 -13.27 9.36 -34.44 -0.32 -13.59 16 12 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 13 C 0.08 2.20 5.46 -17.82 -0.10 2.10 16 14 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 15 Si 0.88 21.60 25.08 -169.99 -4.26 17.34 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.26 -5.93 5.43 56.52 0.31 -5.63 16 19 C -0.18 -3.58 8.12 -26.73 -0.22 -3.79 16 20 C -0.19 -4.19 7.55 -26.73 -0.20 -4.39 16 21 C 0.08 1.20 4.31 -5.16 -0.02 1.17 16 22 C -0.08 -1.26 5.08 -104.63 -0.53 -1.79 16 23 C -0.11 -1.55 9.65 -39.48 -0.38 -1.93 16 24 C -0.11 -1.41 10.05 -39.65 -0.40 -1.81 16 25 C -0.13 -1.59 10.05 -39.65 -0.40 -1.98 16 26 C -0.11 -1.55 8.99 -39.49 -0.36 -1.91 16 27 C -0.08 -1.26 4.77 -104.60 -0.50 -1.76 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.23 7.70 -51.93 -0.40 0.83 16 33 H 0.05 1.05 6.17 -51.93 -0.32 0.73 16 34 H 0.06 1.32 6.40 -51.93 -0.33 0.99 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.09 1.59 5.56 -51.93 -0.29 1.30 16 37 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.08 1.80 7.06 -51.93 -0.37 1.44 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.11 1.76 5.75 -51.93 -0.30 1.46 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.14 1.72 5.34 -52.48 -0.28 1.44 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -31.05 347.23 -8.85 -39.90 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.54 Total: 6.35 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.52 Total: -20.29 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.17 Total: -35.78 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.59 Total: -12.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.26 Total: 17.34 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.05 -8.85 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602918061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.545 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds