Wall clock time and date at job start Tue Mar 31 2020 11:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34227 * 116.99657 * 2 1 4 4 O 1.20826 * 120.00619 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99912 * 179.97438 * 3 2 1 6 6 H 1.09009 * 109.29980 * 59.75055 * 5 3 2 7 7 C 1.52890 * 109.39108 * 179.49898 * 5 3 2 8 8 N 1.47155 * 108.51041 * 170.53425 * 7 5 3 9 9 C 1.46899 * 111.00442 * 52.16107 * 8 7 5 10 10 C 1.53000 * 109.47338 * 161.29193 * 9 8 7 11 11 C 1.50703 * 115.55119 * 149.20826 * 10 9 8 12 12 H 1.07998 * 120.00064 * 272.28927 * 11 10 9 13 13 C 1.37875 * 120.00142 * 92.28738 * 11 10 9 14 14 N 1.31515 * 120.00126 * 173.04409 * 13 11 10 15 15 Si 1.86806 * 119.99745 * 353.04602 * 13 11 10 16 16 H 1.48500 * 109.47200 * 93.96988 * 15 13 11 17 17 H 1.48499 * 109.46872 * 213.96395 * 15 13 11 18 18 H 1.48494 * 109.47363 * 333.96757 * 15 13 11 19 19 C 1.52997 * 117.49887 * 3.49909 * 10 9 8 20 20 C 1.52998 * 60.00119 * 252.51103 * 19 10 9 21 21 C 1.46639 * 110.24651 * 288.73972 * 8 7 5 22 22 C 1.50617 * 110.48630 * 52.55576 * 21 8 7 23 23 C 1.38735 * 118.41888 * 162.65300 * 22 21 8 24 24 C 1.38021 * 120.37373 * 179.59919 * 23 22 21 25 25 C 1.38260 * 119.86902 * 0.02562 * 24 23 22 26 26 C 1.38029 * 119.82997 * 0.06138 * 25 24 23 27 27 C 1.37832 * 121.85003 * 342.40638 * 22 21 8 28 28 H 1.08995 * 109.46735 * 59.99649 * 1 2 3 29 29 H 1.08995 * 109.46597 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46797 * 300.00027 * 1 2 3 31 31 H 1.09001 * 109.62937 * 290.23744 * 7 5 3 32 32 H 1.09001 * 109.62793 * 50.82162 * 7 5 3 33 33 H 1.09005 * 109.47051 * 281.29178 * 9 8 7 34 34 H 1.08996 * 109.47060 * 41.28830 * 9 8 7 35 35 H 0.96997 * 119.99791 * 180.02562 * 14 13 11 36 36 H 1.08999 * 117.50091 * 0.02562 * 19 10 9 37 37 H 1.09001 * 117.49992 * 145.02221 * 19 10 9 38 38 H 1.08996 * 117.49804 * 252.51017 * 20 19 10 39 39 H 1.09005 * 117.51710 * 107.48160 * 20 19 10 40 40 H 1.08992 * 109.30019 * 292.23911 * 21 8 7 41 41 H 1.09004 * 109.13200 * 172.76206 * 21 8 7 42 42 H 1.08000 * 119.81527 * 359.58196 * 23 22 21 43 43 H 1.08003 * 120.05854 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.08640 * 180.09130 * 25 24 23 45 45 H 1.08003 * 119.82762 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9537 0.7761 -0.8879 7 6 3.9978 2.7417 -0.0122 8 7 5.4499 2.8036 0.2180 9 6 6.1689 1.9267 -0.7158 10 6 7.6390 2.3457 -0.7798 11 6 8.6200 1.2353 -1.0548 12 1 9.0271 0.6595 -0.2368 13 6 8.9979 0.9545 -2.3507 14 7 9.9535 0.0811 -2.5824 15 14 8.1526 1.8147 -3.7773 16 1 8.9334 3.0176 -4.1629 17 1 8.0681 0.8877 -4.9343 18 1 6.7845 2.2227 -3.3688 19 6 8.0922 3.4762 0.1462 20 6 7.9554 3.7270 -1.3569 21 6 5.7585 2.4559 1.6088 22 6 5.1257 1.1394 1.9759 23 6 5.5923 0.4731 3.0998 24 6 5.0359 -0.7320 3.4779 25 6 4.0080 -1.2798 2.7329 26 6 3.5438 -0.6191 1.6134 27 6 4.1028 0.5915 1.2320 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.7612 3.1845 -0.9796 32 1 3.4782 3.2830 0.7785 33 1 6.0999 0.8947 -0.3715 34 1 5.7240 2.0093 -1.7074 35 1 10.2195 -0.1161 -3.4941 36 1 7.3433 3.9211 0.8013 37 1 9.1002 3.4169 0.5568 38 1 8.8732 3.8326 -1.9351 39 1 7.1162 4.3370 -1.6913 40 1 5.3769 3.2354 2.2681 41 1 6.8395 2.3815 1.7270 42 1 6.3956 0.8998 3.6821 43 1 5.4033 -1.2465 4.3535 44 1 3.5691 -2.2219 3.0264 45 1 2.7406 -1.0468 1.0317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602918061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:09 Heat of formation + Delta-G solvation = -30.167065 kcal Electronic energy + Delta-G solvation = -27511.090948 eV Core-core repulsion = 23880.174564 eV Total energy + Delta-G solvation = -3630.916384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34538 -40.88495 -39.15621 -37.83376 -36.97927 -34.32390 -33.90707 -32.09740 -30.37454 -28.90219 -28.72035 -27.26498 -25.83838 -23.90161 -23.55513 -23.14051 -22.08133 -21.14088 -19.87981 -18.99990 -18.25879 -18.02741 -17.72337 -16.95549 -16.78687 -16.67237 -16.39891 -15.97063 -15.44940 -15.08776 -14.84794 -14.72803 -14.68555 -14.20307 -14.06328 -13.81348 -13.75960 -13.56817 -13.25228 -12.99212 -12.92037 -12.82156 -12.51903 -12.32521 -12.17261 -11.90450 -11.82224 -11.77948 -11.71027 -11.61655 -11.40913 -10.80971 -10.59505 -10.08526 -9.70926 -9.52682 -9.35142 -8.27838 -6.33015 0.32288 0.46114 1.02823 1.37004 1.39696 1.52638 1.63469 2.39310 2.80379 2.89310 3.13839 3.33918 3.46157 3.54083 3.79608 3.87752 4.03912 4.14493 4.25157 4.25854 4.30476 4.32727 4.42906 4.50759 4.54999 4.56480 4.62092 4.65908 4.71481 4.79258 4.83261 4.92630 5.00986 5.03638 5.09794 5.14548 5.23913 5.26868 5.45504 5.52758 5.61181 5.61652 5.65197 5.77113 6.08047 6.09135 6.10298 6.36744 6.58278 6.77466 7.36659 8.88043 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.005030 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.984867 B = 5564.924044 C = 6160.909028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.357 6.357 3 C 0.485 3.515 4 O -0.524 6.524 5 C -0.075 4.075 6 H 0.115 0.885 7 C 0.074 3.926 8 N -0.515 5.515 9 C 0.094 3.906 10 C -0.016 4.016 11 C -0.485 4.485 12 H 0.030 0.970 13 C 0.023 3.977 14 N -0.949 5.949 15 Si 0.938 3.062 16 H -0.274 1.274 17 H -0.300 1.300 18 H -0.232 1.232 19 C -0.156 4.156 20 C -0.191 4.191 21 C 0.081 3.919 22 C -0.105 4.105 23 C -0.127 4.127 24 C -0.117 4.117 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.102 4.102 28 H 0.063 0.937 29 H 0.132 0.868 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.062 0.938 35 H 0.264 0.736 36 H 0.119 0.881 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.737 0.561 9.672 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.328 3.672 4 O -0.413 6.413 5 C -0.096 4.096 6 H 0.132 0.868 7 C -0.054 4.054 8 N -0.235 5.235 9 C -0.033 4.033 10 C -0.017 4.017 11 C -0.523 4.523 12 H 0.048 0.952 13 C -0.174 4.174 14 N -0.589 5.589 15 Si 0.763 3.237 16 H -0.200 1.200 17 H -0.227 1.227 18 H -0.155 1.155 19 C -0.193 4.193 20 C -0.228 4.228 21 C -0.047 4.047 22 C -0.106 4.106 23 C -0.146 4.146 24 C -0.134 4.134 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.102 4.102 28 H 0.082 0.918 29 H 0.150 0.850 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.704 1.282 9.443 20.992 hybrid contribution -0.051 -0.952 -0.902 1.313 sum -18.756 0.330 8.541 20.611 Atomic orbital electron populations 1.23604 0.74716 1.05845 1.02654 1.86532 1.25107 1.32306 1.83400 1.23411 0.91166 0.81542 0.71104 1.90639 1.67301 1.36928 1.46391 1.20735 0.87762 1.01615 0.99438 0.86781 1.22179 0.88047 0.90967 1.04242 1.62731 1.05517 1.51722 1.03545 1.21786 0.92992 0.93755 0.94810 1.19231 0.92021 0.87461 1.03032 1.20495 1.23447 1.15971 0.92390 0.95186 1.25794 0.94617 0.95421 1.01565 1.70057 1.30508 1.36981 1.21383 0.85915 0.81758 0.77896 0.78083 1.20021 1.22704 1.15473 1.22958 1.00932 1.03321 0.92133 1.22833 1.01418 1.01168 0.97425 1.21455 1.01392 0.92437 0.89384 1.20529 0.95937 0.98442 0.95714 1.21335 1.00441 0.96119 0.96673 1.21484 0.96105 0.95424 1.00436 1.21400 0.97441 1.00696 0.95158 1.21717 1.00620 0.94072 0.97798 1.19131 0.98303 0.96741 0.96023 0.91776 0.84950 0.91831 0.89221 0.88988 0.95023 0.91999 0.92682 0.86321 0.91631 0.92020 0.88642 0.87542 0.88816 0.84543 0.83578 0.83539 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.56 113.37 1.20 1.57 16 2 O -0.36 -7.95 7.67 -51.39 -0.39 -8.34 16 3 C 0.48 12.85 7.06 71.24 0.50 13.35 16 4 O -0.52 -15.64 15.57 21.96 0.34 -15.30 16 5 C -0.07 -2.09 2.16 -12.32 -0.03 -2.12 16 6 H 0.11 3.33 7.19 -2.38 -0.02 3.31 16 7 C 0.07 2.08 4.66 86.22 0.40 2.48 16 8 N -0.52 -16.10 4.00 -901.20 -3.60 -19.70 16 9 C 0.09 3.64 3.62 86.30 0.31 3.96 16 10 C -0.02 -0.72 1.16 -52.93 -0.06 -0.78 16 11 C -0.48 -27.24 9.36 25.60 0.24 -27.00 16 12 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 13 C 0.02 1.35 5.46 84.65 0.46 1.81 16 14 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 15 Si 0.94 44.59 25.08 68.60 1.72 46.31 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 18 H -0.23 -9.96 5.43 99.48 0.54 -9.42 16 19 C -0.16 -6.06 8.12 30.59 0.25 -5.81 16 20 C -0.19 -7.89 7.55 30.59 0.23 -7.66 16 21 C 0.08 2.32 4.31 85.58 0.37 2.69 16 22 C -0.10 -3.03 5.08 -19.87 -0.10 -3.13 16 23 C -0.13 -3.30 9.65 22.34 0.22 -3.08 16 24 C -0.12 -2.66 10.05 22.22 0.22 -2.43 16 25 C -0.13 -2.91 10.05 22.23 0.22 -2.69 16 26 C -0.12 -3.19 8.99 22.33 0.20 -2.99 16 27 C -0.10 -2.91 4.77 -19.85 -0.09 -3.00 16 28 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 29 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 0.96 8.13 -2.38 -0.02 0.94 16 31 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.09 2.48 7.70 -2.39 -0.02 2.46 16 33 H 0.03 1.33 6.17 -2.38 -0.01 1.32 16 34 H 0.06 2.41 6.40 -2.39 -0.02 2.39 16 35 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.12 3.92 5.56 -2.39 -0.01 3.90 16 37 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.06 2.76 7.06 -2.39 -0.02 2.74 16 39 H 0.10 3.54 8.14 -2.38 -0.02 3.52 16 40 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.09 2.95 5.75 -2.39 -0.01 2.94 16 42 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 44 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.15 3.40 5.34 -2.91 -0.02 3.38 16 Total: -1.00 -68.53 347.23 3.74 -64.80 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.83 Total: 26.07 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 4.54 Total: -34.85 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -3.30 Total: -78.68 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.72 Total: 46.31 kcal Total: -68.53 3.74 -64.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602918061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.629 kcal (2) G-P(sol) polarization free energy of solvation -68.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds