Wall clock time and date at job start Tue Mar 31 2020 12:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48511 * 109.47049 * 149.99814 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46632 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46784 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00115 * 179.97438 * 12 11 10 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 15 19 19 C 1.36037 * 126.34815 * 264.68633 * 18 17 16 20 20 N 1.30107 * 110.10182 * 179.87780 * 19 18 17 21 21 C 1.35783 * 109.64164 * 0.39107 * 20 19 18 22 22 C 1.39747 * 133.60288 * 179.76274 * 21 20 19 23 23 C 1.36600 * 119.88568 * 180.02562 * 22 21 20 24 24 C 1.38771 * 120.67065 * 359.97394 * 23 22 21 25 25 C 1.37856 * 120.45260 * 0.04742 * 24 23 22 26 26 C 1.38055 * 126.35328 * 84.99901 * 18 17 16 27 27 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 29 29 H 1.09001 * 109.47438 * 300.00155 * 9 7 2 30 30 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 32 32 H 1.09002 * 109.47193 * 60.00246 * 11 10 9 33 33 H 1.08992 * 109.47333 * 299.99245 * 11 10 9 34 34 H 0.97003 * 120.00244 * 359.97438 * 12 11 10 35 35 H 1.09002 * 109.47120 * 59.99760 * 15 13 12 36 36 H 1.08998 * 109.46862 * 300.00562 * 15 13 12 37 37 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 38 38 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 39 39 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 40 40 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 41 41 H 1.08003 * 124.94734 * 0.02562 * 19 18 17 42 42 H 1.08001 * 120.05734 * 359.97438 * 22 21 20 43 43 H 1.08001 * 119.66102 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.77568 * 180.02562 * 24 23 22 45 45 H 1.07994 * 120.15578 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0398 -4.0178 0.0027 13 6 7.3649 -4.2642 0.0033 14 8 8.1530 -3.3423 0.0039 15 6 7.8672 -5.6849 0.0032 16 6 9.3972 -5.6850 0.0046 17 6 9.9071 -7.1275 0.0039 18 7 11.3721 -7.1275 0.0058 19 6 12.1798 -7.2279 -1.0842 20 7 13.4285 -7.1920 -0.7204 21 6 13.5071 -7.0746 0.6301 22 6 14.5732 -6.9970 1.5303 23 6 14.3267 -6.8810 2.8688 24 6 13.0250 -6.8385 3.3478 25 6 11.9578 -6.9139 2.4785 26 6 12.1890 -7.0317 1.1146 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8912 29 1 3.8753 -0.6804 -0.8888 30 1 3.6585 -3.1502 -0.8892 31 1 3.6578 -3.1506 0.8907 32 1 5.9141 -2.1231 0.8927 33 1 5.9155 -2.1225 -0.8873 34 1 5.4095 -4.7551 0.0026 35 1 7.5043 -6.1986 -0.8870 36 1 7.5034 -6.1989 0.8929 37 1 9.7598 -5.1715 0.8951 38 1 9.7613 -5.1708 -0.8849 39 1 9.5430 -7.6420 0.8931 40 1 9.5446 -7.6406 -0.8868 41 1 11.8348 -7.3213 -2.1034 42 1 15.5903 -7.0295 1.1684 43 1 15.1534 -6.8217 3.5614 44 1 12.8467 -6.7461 4.4091 45 1 10.9467 -6.8800 2.8564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609143635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:10 Heat of formation + Delta-G solvation = 13.933033 kcal Electronic energy + Delta-G solvation = -24117.407748 eV Core-core repulsion = 20520.696439 eV Total energy + Delta-G solvation = -3596.711309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.45576 -39.76713 -37.71514 -36.05033 -35.44269 -33.40779 -32.90244 -31.51751 -30.57173 -29.62794 -28.09313 -26.61148 -23.62277 -23.51516 -22.48294 -22.14000 -20.82210 -20.81411 -19.89593 -17.74546 -17.58414 -16.92235 -16.67797 -16.26324 -16.10031 -15.78048 -15.56101 -15.10172 -14.49440 -14.33819 -14.19114 -13.96504 -13.81329 -13.71121 -13.04987 -12.73382 -12.69364 -12.34482 -12.26363 -12.01779 -11.95867 -11.91699 -11.72240 -11.33442 -11.15042 -10.94280 -10.70618 -10.29195 -10.25186 -10.04235 -9.83930 -9.64027 -9.28150 -8.96993 -8.68449 -8.60104 -8.42550 -6.10905 -4.09952 0.64976 1.21083 2.20218 2.49117 2.58897 3.20802 3.27662 3.35552 3.39371 3.58685 3.95803 4.11631 4.17443 4.33855 4.40180 4.49100 4.65928 4.71972 4.73247 4.81691 4.96881 5.09943 5.11814 5.15582 5.19647 5.23126 5.39714 5.49818 5.52412 5.58252 5.77933 5.82529 5.93608 6.09977 6.20770 6.21581 6.26179 6.36877 6.54974 6.60902 6.72069 6.78176 7.16566 7.30050 7.51489 7.54907 7.71344 8.20754 8.45188 8.92482 9.51271 11.02230 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.001733 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.720884 B =16151.732762 C =16455.547482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.113 4.113 11 C 0.113 3.887 12 N -0.726 5.726 13 C 0.506 3.494 14 O -0.545 6.545 15 C -0.138 4.138 16 C -0.121 4.121 17 C 0.110 3.890 18 N -0.490 5.490 19 C 0.262 3.738 20 N -0.499 5.499 21 C 0.042 3.958 22 C -0.065 4.065 23 C -0.130 4.130 24 C -0.103 4.103 25 C -0.108 4.108 26 C 0.049 3.951 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.213 0.787 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.627 -19.985 2.656 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.377 5.377 13 C 0.292 3.708 14 O -0.422 6.422 15 C -0.179 4.179 16 C -0.160 4.160 17 C -0.012 4.012 18 N -0.180 5.180 19 C -0.024 4.024 20 N -0.218 5.218 21 C -0.076 4.076 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.123 4.123 25 C -0.129 4.129 26 C -0.060 4.060 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.229 0.771 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 25.597 -19.231 2.121 32.086 hybrid contribution -0.940 0.670 0.373 1.213 sum 24.657 -18.560 2.494 30.963 Atomic orbital electron populations 1.69908 1.06308 1.26999 1.50865 1.25029 0.94756 0.99247 0.94421 0.86779 0.80394 0.83527 0.78618 1.20221 1.21310 1.18928 1.21085 0.89275 0.94514 1.51268 0.91014 1.19508 0.97315 0.91450 0.96673 1.21705 0.90568 1.01104 1.01724 1.21666 0.96201 0.81172 1.01941 1.46192 1.06713 1.10088 1.74687 1.20526 0.82615 0.91208 0.76458 1.90729 1.55350 1.46509 1.49622 1.21565 0.96292 0.95241 1.04806 1.21713 0.94083 0.95061 1.05168 1.21903 0.75908 0.98528 1.04827 1.45459 1.07029 1.59588 1.05892 1.25375 0.85129 0.98316 0.93551 1.70460 1.18321 1.21983 1.11007 1.19092 0.92267 1.05811 0.90394 1.20032 0.97428 0.99377 0.91654 1.20654 0.97043 1.02404 0.94909 1.20912 0.91987 1.00006 0.99381 1.19989 0.99801 1.04121 0.89014 1.18909 0.91205 1.06257 0.89640 0.92658 0.96314 0.96751 0.92101 0.92091 0.91801 0.91791 0.76589 0.88460 0.88565 0.90319 0.90200 0.89113 0.88316 0.77056 0.85475 0.85398 0.85278 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 11 C 0.11 1.77 5.67 -4.04 -0.02 1.75 16 12 N -0.73 -8.74 5.56 -60.29 -0.33 -9.07 16 13 C 0.51 6.13 7.83 -10.99 -0.09 6.05 16 14 O -0.54 -9.15 15.98 5.55 0.09 -9.06 16 15 C -0.14 -0.91 5.70 -27.89 -0.16 -1.07 16 16 C -0.12 -0.90 4.83 -26.73 -0.13 -1.03 16 17 C 0.11 0.56 6.16 -4.04 -0.02 0.53 16 18 N -0.49 -4.01 2.81 -115.80 -0.32 -4.33 16 19 C 0.26 2.21 12.49 -89.79 -1.12 1.09 16 20 N -0.50 -5.81 11.27 -12.05 -0.14 -5.95 16 21 C 0.04 0.49 7.23 -84.70 -0.61 -0.12 16 22 C -0.07 -0.63 10.05 -39.61 -0.40 -1.03 16 23 C -0.13 -1.01 9.96 -39.98 -0.40 -1.41 16 24 C -0.10 -0.79 10.03 -39.52 -0.40 -1.19 16 25 C -0.11 -0.94 10.05 -39.50 -0.40 -1.33 16 26 C 0.05 0.49 6.87 -83.99 -0.58 -0.08 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 29 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 3.62 8.47 -40.82 -0.35 3.27 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.24 8.13 -51.93 -0.42 -0.18 16 41 H 0.21 0.87 8.06 -52.48 -0.42 0.45 16 42 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 44 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -36.60 380.27 -10.91 -47.52 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -7.04 Total: -1.65 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -5.01 Total: -13.41 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.02 Total: -45.98 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.60 -10.91 -47.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.451 kcal (2) G-P(sol) polarization free energy of solvation -36.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds