Wall clock time and date at job start Tue Mar 31 2020 12:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48511 * 109.47049 * 149.99814 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46632 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46784 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00115 * 179.97438 * 12 11 10 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.00369 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 15 19 19 C 1.36037 * 126.34815 * 264.68633 * 18 17 16 20 20 N 1.30107 * 110.10182 * 179.87780 * 19 18 17 21 21 C 1.35783 * 109.64164 * 0.39107 * 20 19 18 22 22 C 1.39747 * 133.60288 * 179.76274 * 21 20 19 23 23 C 1.36600 * 119.88568 * 180.02562 * 22 21 20 24 24 C 1.38771 * 120.67065 * 359.97394 * 23 22 21 25 25 C 1.37856 * 120.45260 * 0.04742 * 24 23 22 26 26 C 1.38055 * 126.35328 * 84.99901 * 18 17 16 27 27 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 29 29 H 1.09001 * 109.47438 * 300.00155 * 9 7 2 30 30 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 32 32 H 1.09002 * 109.47193 * 60.00246 * 11 10 9 33 33 H 1.08992 * 109.47333 * 299.99245 * 11 10 9 34 34 H 0.97003 * 120.00244 * 359.97438 * 12 11 10 35 35 H 1.09002 * 109.47120 * 59.99760 * 15 13 12 36 36 H 1.08998 * 109.46862 * 300.00562 * 15 13 12 37 37 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 38 38 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 39 39 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 40 40 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 41 41 H 1.08003 * 124.94734 * 0.02562 * 19 18 17 42 42 H 1.08001 * 120.05734 * 359.97438 * 22 21 20 43 43 H 1.08001 * 119.66102 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.77568 * 180.02562 * 24 23 22 45 45 H 1.07994 * 120.15578 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0398 -4.0178 0.0027 13 6 7.3649 -4.2642 0.0033 14 8 8.1530 -3.3423 0.0039 15 6 7.8672 -5.6849 0.0032 16 6 9.3972 -5.6850 0.0046 17 6 9.9071 -7.1275 0.0039 18 7 11.3721 -7.1275 0.0058 19 6 12.1798 -7.2279 -1.0842 20 7 13.4285 -7.1920 -0.7204 21 6 13.5071 -7.0746 0.6301 22 6 14.5732 -6.9970 1.5303 23 6 14.3267 -6.8810 2.8688 24 6 13.0250 -6.8385 3.3478 25 6 11.9578 -6.9139 2.4785 26 6 12.1890 -7.0317 1.1146 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8912 29 1 3.8753 -0.6804 -0.8888 30 1 3.6585 -3.1502 -0.8892 31 1 3.6578 -3.1506 0.8907 32 1 5.9141 -2.1231 0.8927 33 1 5.9155 -2.1225 -0.8873 34 1 5.4095 -4.7551 0.0026 35 1 7.5043 -6.1986 -0.8870 36 1 7.5034 -6.1989 0.8929 37 1 9.7598 -5.1715 0.8951 38 1 9.7613 -5.1708 -0.8849 39 1 9.5430 -7.6420 0.8931 40 1 9.5446 -7.6406 -0.8868 41 1 11.8348 -7.3213 -2.1034 42 1 15.5903 -7.0295 1.1684 43 1 15.1534 -6.8217 3.5614 44 1 12.8467 -6.7461 4.4091 45 1 10.9467 -6.8800 2.8564 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609143635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:09 Heat of formation + Delta-G solvation = -8.937140 kcal Electronic energy + Delta-G solvation = -24118.399473 eV Core-core repulsion = 20520.696439 eV Total energy + Delta-G solvation = -3597.703034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.06242 -40.75804 -38.30095 -37.12745 -36.32518 -35.14806 -33.69819 -33.13872 -31.21782 -30.24415 -29.36280 -27.65946 -24.83680 -24.17345 -23.40809 -22.86046 -22.24586 -21.38717 -21.05371 -18.99811 -18.38575 -18.16152 -17.53610 -17.05392 -16.86598 -16.68459 -16.35302 -16.15756 -16.14549 -15.18338 -15.10967 -14.80198 -14.70141 -14.62658 -14.45720 -13.84999 -13.71352 -13.65343 -13.07552 -12.90421 -12.79078 -12.73975 -12.68869 -12.53376 -12.31300 -11.93460 -11.85732 -11.79532 -11.60978 -11.34986 -11.33617 -10.92844 -10.85753 -10.77689 -10.07778 -9.31566 -9.06436 -8.30903 -6.34608 0.03162 0.57507 1.35012 1.36983 1.48222 1.67186 1.67351 1.87575 2.29654 2.34531 2.93057 3.04881 3.38169 3.66058 3.68750 3.73575 3.94212 4.08798 4.13839 4.17830 4.21378 4.25366 4.34285 4.48181 4.50019 4.52611 4.53822 4.67179 4.69303 4.84886 4.87232 4.93640 4.98727 5.02803 5.21051 5.26604 5.40640 5.47638 5.51191 5.54306 5.59372 5.60143 5.63873 5.97530 6.24826 6.25878 6.61329 6.73693 6.90971 7.30027 7.30822 8.85300 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.001733 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.720884 B =16151.732762 C =16455.547482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.250 1.250 7 C -0.530 4.530 8 H 0.039 0.961 9 C -0.014 4.014 10 C -0.099 4.099 11 C 0.125 3.875 12 N -0.718 5.718 13 C 0.501 3.499 14 O -0.598 6.598 15 C -0.124 4.124 16 C -0.114 4.114 17 C 0.113 3.887 18 N -0.490 5.490 19 C 0.264 3.736 20 N -0.544 5.544 21 C 0.007 3.993 22 C -0.090 4.090 23 C -0.127 4.127 24 C -0.107 4.107 25 C -0.118 4.118 26 C 0.030 3.970 27 H 0.266 0.734 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.418 0.582 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.250 0.750 42 H 0.129 0.871 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.196 -21.249 2.963 33.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.192 4.192 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.058 0.942 9 C -0.052 4.052 10 C -0.137 4.137 11 C 0.001 3.999 12 N -0.370 5.370 13 C 0.289 3.711 14 O -0.479 6.479 15 C -0.164 4.164 16 C -0.153 4.153 17 C -0.008 4.008 18 N -0.179 5.179 19 C -0.022 4.022 20 N -0.264 5.264 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.147 4.147 24 C -0.127 4.127 25 C -0.138 4.138 26 C -0.080 4.080 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.255 0.745 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.153 0.847 41 H 0.266 0.734 42 H 0.147 0.853 43 H 0.171 0.829 44 H 0.173 0.827 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 26.148 -20.543 2.433 33.341 hybrid contribution -1.162 1.016 0.287 1.570 sum 24.986 -19.527 2.720 31.828 Atomic orbital electron populations 1.70051 1.08139 1.28105 1.52635 1.25964 0.95582 1.03339 0.94277 0.85728 0.79481 0.78719 0.79159 1.19280 1.20998 1.17340 1.21465 0.91863 0.93287 1.50228 0.94220 1.19485 0.94136 0.94938 0.96647 1.21472 0.92027 0.97926 1.02300 1.21248 0.94374 0.83355 1.00931 1.46031 1.07448 1.09034 1.74456 1.21534 0.81793 0.93089 0.74667 1.90715 1.56540 1.48736 1.51922 1.21594 0.95265 0.91498 1.08053 1.21589 0.94785 0.96249 1.02683 1.22116 0.74057 0.97092 1.07522 1.45658 1.08110 1.58941 1.05171 1.26124 0.84551 0.96498 0.94990 1.70405 1.20394 1.24098 1.11483 1.19529 0.93631 1.07036 0.90855 1.20285 0.97475 1.00659 0.92535 1.20990 0.98170 1.01016 0.94561 1.21308 0.91677 0.99018 1.00674 1.20313 1.01013 1.03872 0.88648 1.19207 0.91248 1.06785 0.90722 0.92510 0.96315 0.96395 0.91495 0.91574 0.92999 0.92841 0.74526 0.84774 0.85374 0.93366 0.92347 0.87313 0.84723 0.73413 0.85283 0.82930 0.82668 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 2 C 0.01 0.31 5.47 84.65 0.46 0.78 16 3 Si 0.95 44.04 27.47 68.60 1.88 45.92 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 7 C -0.53 -29.61 9.66 25.60 0.25 -29.37 16 8 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 9 C -0.01 -0.63 4.04 29.85 0.12 -0.51 16 10 C -0.10 -3.40 5.27 30.60 0.16 -3.24 16 11 C 0.13 3.75 5.67 86.38 0.49 4.24 16 12 N -0.72 -15.50 5.56 -463.05 -2.57 -18.07 16 13 C 0.50 11.06 7.83 87.66 0.69 11.74 16 14 O -0.60 -19.85 15.98 -3.05 -0.05 -19.90 16 15 C -0.12 -1.15 5.70 29.85 0.17 -0.98 16 16 C -0.11 -1.44 4.83 30.59 0.15 -1.29 16 17 C 0.11 0.76 6.16 86.38 0.53 1.29 16 18 N -0.49 -7.27 2.81 -520.28 -1.46 -8.73 16 19 C 0.26 4.18 12.49 180.06 2.25 6.43 16 20 N -0.54 -12.94 11.27 -192.03 -2.16 -15.10 16 21 C 0.01 0.17 7.23 39.45 0.29 0.45 16 22 C -0.09 -1.79 10.05 22.25 0.22 -1.57 16 23 C -0.13 -1.90 9.96 22.01 0.22 -1.68 16 24 C -0.11 -1.49 10.03 22.31 0.22 -1.27 16 25 C -0.12 -1.90 10.05 22.32 0.22 -1.68 16 26 C 0.03 0.59 6.87 38.86 0.27 0.85 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16 29 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.42 6.11 8.47 -92.71 -0.79 5.32 16 35 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 38 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.13 -0.01 8.13 -2.39 -0.02 -0.03 16 41 H 0.25 1.49 8.06 -2.91 -0.02 1.46 16 42 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 44 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -84.15 380.27 2.79 -81.36 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.14 Total: 8.60 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 6.71 Total: -15.81 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -5.90 Total: -100.18 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -84.15 2.79 -81.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609143635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.422 kcal (2) G-P(sol) polarization free energy of solvation -84.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds