Wall clock time and date at job start Tue Mar 31 2020 12:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48496 * 109.47041 * 240.00669 * 3 2 1 5 5 H 1.48501 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46767 * 120.00482 * 3 2 1 7 7 C 1.38807 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00235 * 169.81470 * 7 2 1 9 9 N 1.36942 * 120.00011 * 349.82074 * 7 2 1 10 10 C 1.46924 * 120.62836 * 328.38254 * 9 7 2 11 11 C 1.53197 * 108.77476 * 233.58689 * 10 9 7 12 12 C 1.53033 * 109.31190 * 305.36580 * 11 10 9 13 13 N 1.46504 * 109.46210 * 181.38331 * 12 11 10 14 14 C 1.34773 * 120.00289 * 154.97020 * 13 12 11 15 15 O 1.21589 * 119.99747 * 5.01473 * 14 13 12 16 16 N 1.34776 * 119.99898 * 185.01211 * 14 13 12 17 17 C 1.46534 * 124.98421 * 354.96630 * 16 14 13 18 18 C 1.53736 * 105.20026 * 180.02562 * 17 16 14 19 19 C 1.51213 * 104.58524 * 359.97438 * 18 17 16 20 20 C 1.38190 * 130.96903 * 180.02562 * 19 18 17 21 21 C 1.38230 * 120.14831 * 180.02562 * 20 19 18 22 22 C 1.38289 * 119.82742 * 359.91966 * 21 20 19 23 23 C 1.37843 * 120.22311 * 0.09948 * 22 21 20 24 24 C 1.38549 * 108.56218 * 0.02562 * 19 18 17 25 25 C 1.53042 * 109.52720 * 61.37440 * 12 11 10 26 26 C 1.46923 * 120.63077 * 148.36340 * 9 7 2 27 27 H 0.97003 * 119.99857 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58628 * 113.80018 * 10 9 7 29 29 H 1.08997 * 109.70551 * 353.44293 * 10 9 7 30 30 H 1.09002 * 109.49704 * 185.41651 * 11 10 9 31 31 H 1.09003 * 109.52134 * 65.33506 * 11 10 9 32 32 H 1.09001 * 109.46691 * 301.35856 * 12 11 10 33 33 H 0.97003 * 119.99591 * 334.97967 * 13 12 11 34 34 H 1.08999 * 110.29944 * 61.08982 * 17 16 14 35 35 H 1.09007 * 110.29858 * 298.94964 * 17 16 14 36 36 H 1.09005 * 110.41261 * 241.22004 * 18 17 16 37 37 H 1.09008 * 110.41721 * 118.77645 * 18 17 16 38 38 H 1.08001 * 119.92537 * 0.02562 * 20 19 18 39 39 H 1.08001 * 120.08120 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.89295 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.85596 * 180.21424 * 23 22 21 42 42 H 1.09001 * 109.50100 * 58.57641 * 25 12 11 43 43 H 1.09004 * 109.49576 * 178.67555 * 25 12 11 44 44 H 1.09005 * 109.58576 * 246.19942 * 26 9 7 45 45 H 1.09004 * 109.58708 * 6.47987 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0775 -1.2095 -0.1659 9 7 1.3417 -2.3788 0.2085 10 6 0.1526 -2.4212 1.0706 11 6 0.3556 -3.5015 2.1377 12 6 0.6851 -4.8312 1.4556 13 7 0.8474 -5.8740 2.4717 14 6 0.6404 -7.1663 2.1501 15 8 0.4086 -7.4763 0.9974 16 7 0.6904 -8.1150 3.1061 17 6 1.0625 -7.8804 4.5038 18 6 0.9690 -9.2568 5.1823 19 6 0.5361 -10.1963 4.0794 20 6 0.2884 -11.5558 4.0926 21 6 -0.1027 -12.2014 2.9346 22 6 -0.2475 -11.4830 1.7619 23 6 -0.0012 -10.1269 1.7440 24 6 0.3950 -9.4678 2.9094 25 6 1.9841 -4.6892 0.6589 26 6 1.7995 -3.6227 -0.4253 27 1 -0.4850 0.8401 0.0004 28 1 -0.7253 -2.6607 0.4706 29 1 0.0132 -1.4535 1.5522 30 1 -0.5570 -3.6097 2.7239 31 1 1.1777 -3.2155 2.7938 32 1 -0.1264 -5.1044 0.7812 33 1 1.1037 -5.6343 3.3760 34 1 0.3665 -7.1818 4.9683 35 1 2.0812 -7.4972 4.5648 36 1 0.2255 -9.2382 5.9792 37 1 1.9414 -9.5538 5.5754 38 1 0.4007 -12.1151 5.0096 39 1 -0.2956 -13.2640 2.9460 40 1 -0.5535 -11.9863 0.8566 41 1 -0.1195 -9.5710 0.8257 42 1 2.7910 -4.3917 1.3285 43 1 2.2308 -5.6430 0.1924 44 1 1.0559 -3.9602 -1.1473 45 1 2.7480 -3.4466 -0.9328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609338578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:55 Heat of formation + Delta-G solvation = 26.430879 kcal Electronic energy + Delta-G solvation = -26133.465951 eV Core-core repulsion = 22537.296590 eV Total energy + Delta-G solvation = -3596.169362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.30267 -39.25088 -37.43578 -36.40278 -34.50097 -32.57875 -32.08781 -30.40192 -29.85653 -29.21502 -28.97347 -25.15996 -23.66399 -23.33370 -22.24884 -21.83365 -21.40301 -20.11802 -19.39833 -18.08429 -16.79854 -16.68737 -16.49316 -15.88469 -15.34732 -15.03970 -14.76932 -14.59433 -14.00507 -13.80317 -13.71876 -13.54541 -13.01124 -12.97216 -12.87572 -12.75503 -12.62275 -12.34585 -12.14612 -11.80317 -11.47833 -11.13274 -11.05625 -10.87502 -10.74930 -10.53156 -10.40656 -10.27521 -10.07969 -10.03902 -9.81079 -9.56451 -8.94382 -8.80757 -8.48909 -7.84858 -6.63893 -5.80256 -3.28206 1.18887 1.28321 2.38338 3.11319 3.37008 3.42322 3.43201 3.70107 3.78701 4.21396 4.32366 4.47473 4.71025 4.83894 4.93172 5.03475 5.16771 5.29722 5.31490 5.37961 5.45556 5.49501 5.50179 5.53106 5.58364 5.84751 5.85919 5.99484 6.08037 6.23400 6.28529 6.30635 6.33913 6.46074 6.50093 6.56898 6.58193 6.79438 6.85020 6.91304 6.98855 7.06519 7.31823 7.63329 7.77016 7.86474 8.46383 8.51269 9.20878 9.81912 10.40585 11.28333 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.035647 B = 0.002580 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.299107 B =10848.007917 C =11209.884003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.147 4.147 12 C 0.168 3.832 13 N -0.730 5.730 14 C 0.712 3.288 15 O -0.567 6.567 16 N -0.572 5.572 17 C 0.097 3.903 18 C -0.081 4.081 19 C -0.149 4.149 20 C -0.078 4.078 21 C -0.151 4.151 22 C -0.092 4.092 23 C -0.135 4.135 24 C 0.175 3.825 25 C -0.140 4.140 26 C 0.148 3.852 27 H 0.255 0.745 28 H 0.021 0.979 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.393 0.607 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.021 0.979 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 -20.873 12.424 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.049 3.951 11 C -0.187 4.187 12 C 0.064 3.936 13 N -0.383 5.383 14 C 0.415 3.585 15 O -0.443 6.443 16 N -0.299 5.299 17 C -0.026 4.026 18 C -0.118 4.118 19 C -0.153 4.153 20 C -0.097 4.097 21 C -0.171 4.171 22 C -0.111 4.111 23 C -0.156 4.156 24 C 0.078 3.922 25 C -0.180 4.180 26 C 0.021 3.979 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.226 0.774 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.222 -20.686 11.476 23.657 hybrid contribution 0.582 1.021 0.514 1.283 sum 0.804 -19.665 11.990 23.047 Atomic orbital electron populations 1.69950 1.05253 1.25643 1.54192 1.25184 0.95434 0.98420 1.00419 0.86325 0.78810 0.83185 0.78124 1.20831 1.21595 1.21014 1.19140 0.90779 0.83837 1.44526 0.91834 1.44049 1.31563 1.03849 1.52104 1.20757 0.88467 0.96457 0.89393 1.22581 1.00326 0.95203 1.00562 1.21015 0.98592 0.85303 0.88656 1.45629 1.73323 1.04372 1.14961 1.15698 0.78442 0.80721 0.83666 1.90903 1.55446 1.80643 1.17325 1.45122 1.68634 1.06024 1.10076 1.22131 1.01422 0.98688 0.80317 1.21028 1.02776 0.91319 0.96693 1.19952 1.06710 0.94238 0.94409 1.20301 0.98955 0.91998 0.98450 1.20971 1.03425 0.99838 0.92819 1.20938 0.98620 0.93250 0.98245 1.21026 1.02216 0.94529 0.97839 1.18173 0.96666 0.82474 0.94858 1.22402 0.96752 0.99579 0.99307 1.20885 0.98024 0.86569 0.92428 0.93487 0.96072 0.88813 0.92768 0.92194 0.89987 0.77365 0.90017 0.90051 0.89215 0.89222 0.85986 0.85871 0.85627 0.84088 0.92436 0.92560 0.96127 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.99 11.04 55.49 0.61 -25.38 16 2 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 3 Si 0.91 21.48 29.57 -169.99 -5.03 16.45 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 8 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 9 N -0.59 -14.81 2.99 -172.32 -0.51 -15.32 16 10 C 0.18 4.11 5.25 -3.71 -0.02 4.09 16 11 C -0.15 -2.67 5.55 -26.61 -0.15 -2.81 16 12 C 0.17 2.96 2.38 -67.89 -0.16 2.80 16 13 N -0.73 -10.69 5.03 -58.64 -0.29 -10.98 16 14 C 0.71 11.44 8.38 -86.92 -0.73 10.71 16 15 O -0.57 -11.10 14.19 5.29 0.08 -11.02 16 16 N -0.57 -7.51 3.13 -118.25 -0.37 -7.88 16 17 C 0.10 0.83 6.34 -3.64 -0.02 0.81 16 18 C -0.08 -0.59 6.93 -27.25 -0.19 -0.78 16 19 C -0.15 -1.55 6.23 -104.27 -0.65 -2.20 16 20 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 21 C -0.15 -1.37 10.06 -39.57 -0.40 -1.77 16 22 C -0.09 -0.98 10.02 -39.71 -0.40 -1.37 16 23 C -0.14 -1.83 9.46 -39.21 -0.37 -2.20 16 24 C 0.17 2.31 6.62 -83.56 -0.55 1.76 16 25 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 26 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 2.43 6.11 -51.93 -0.32 2.11 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.63 7.65 -51.93 -0.40 1.23 16 33 H 0.39 4.62 7.54 -40.82 -0.31 4.31 16 34 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.14 2.19 6.29 -52.49 -0.33 1.86 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -32.27 358.53 -11.36 -43.63 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.80 Total: 3.76 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -4.44 Total: 1.34 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.57 Total: -59.56 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.27 -11.36 -43.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.058 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds