Wall clock time and date at job start Tue Mar 31 2020 12:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48496 * 109.47041 * 240.00669 * 3 2 1 5 5 H 1.48501 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46767 * 120.00482 * 3 2 1 7 7 C 1.38807 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00235 * 169.81470 * 7 2 1 9 9 N 1.36942 * 120.00011 * 349.82074 * 7 2 1 10 10 C 1.46924 * 120.62836 * 328.38254 * 9 7 2 11 11 C 1.53197 * 108.77476 * 233.58689 * 10 9 7 12 12 C 1.53033 * 109.31190 * 305.36580 * 11 10 9 13 13 N 1.46504 * 109.46210 * 181.38331 * 12 11 10 14 14 C 1.34773 * 120.00289 * 154.97020 * 13 12 11 15 15 O 1.21589 * 119.99747 * 5.01473 * 14 13 12 16 16 N 1.34776 * 119.99898 * 185.01211 * 14 13 12 17 17 C 1.46534 * 124.98421 * 354.96630 * 16 14 13 18 18 C 1.53736 * 105.20026 * 180.02562 * 17 16 14 19 19 C 1.51213 * 104.58524 * 359.97438 * 18 17 16 20 20 C 1.38190 * 130.96903 * 180.02562 * 19 18 17 21 21 C 1.38230 * 120.14831 * 180.02562 * 20 19 18 22 22 C 1.38289 * 119.82742 * 359.91966 * 21 20 19 23 23 C 1.37843 * 120.22311 * 0.09948 * 22 21 20 24 24 C 1.38549 * 108.56218 * 0.02562 * 19 18 17 25 25 C 1.53042 * 109.52720 * 61.37440 * 12 11 10 26 26 C 1.46923 * 120.63077 * 148.36340 * 9 7 2 27 27 H 0.97003 * 119.99857 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.58628 * 113.80018 * 10 9 7 29 29 H 1.08997 * 109.70551 * 353.44293 * 10 9 7 30 30 H 1.09002 * 109.49704 * 185.41651 * 11 10 9 31 31 H 1.09003 * 109.52134 * 65.33506 * 11 10 9 32 32 H 1.09001 * 109.46691 * 301.35856 * 12 11 10 33 33 H 0.97003 * 119.99591 * 334.97967 * 13 12 11 34 34 H 1.08999 * 110.29944 * 61.08982 * 17 16 14 35 35 H 1.09007 * 110.29858 * 298.94964 * 17 16 14 36 36 H 1.09005 * 110.41261 * 241.22004 * 18 17 16 37 37 H 1.09008 * 110.41721 * 118.77645 * 18 17 16 38 38 H 1.08001 * 119.92537 * 0.02562 * 20 19 18 39 39 H 1.08001 * 120.08120 * 179.97438 * 21 20 19 40 40 H 1.07998 * 119.89295 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.85596 * 180.21424 * 23 22 21 42 42 H 1.09001 * 109.50100 * 58.57641 * 25 12 11 43 43 H 1.09004 * 109.49576 * 178.67555 * 25 12 11 44 44 H 1.09005 * 109.58576 * 246.19942 * 26 9 7 45 45 H 1.09004 * 109.58708 * 6.47987 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0775 -1.2095 -0.1659 9 7 1.3417 -2.3788 0.2085 10 6 0.1526 -2.4212 1.0706 11 6 0.3556 -3.5015 2.1377 12 6 0.6851 -4.8312 1.4556 13 7 0.8474 -5.8740 2.4717 14 6 0.6404 -7.1663 2.1501 15 8 0.4086 -7.4763 0.9974 16 7 0.6904 -8.1150 3.1061 17 6 1.0625 -7.8804 4.5038 18 6 0.9690 -9.2568 5.1823 19 6 0.5361 -10.1963 4.0794 20 6 0.2884 -11.5558 4.0926 21 6 -0.1027 -12.2014 2.9346 22 6 -0.2475 -11.4830 1.7619 23 6 -0.0012 -10.1269 1.7440 24 6 0.3950 -9.4678 2.9094 25 6 1.9841 -4.6892 0.6589 26 6 1.7995 -3.6227 -0.4253 27 1 -0.4850 0.8401 0.0004 28 1 -0.7253 -2.6607 0.4706 29 1 0.0132 -1.4535 1.5522 30 1 -0.5570 -3.6097 2.7239 31 1 1.1777 -3.2155 2.7938 32 1 -0.1264 -5.1044 0.7812 33 1 1.1037 -5.6343 3.3760 34 1 0.3665 -7.1818 4.9683 35 1 2.0812 -7.4972 4.5648 36 1 0.2255 -9.2382 5.9792 37 1 1.9414 -9.5538 5.5754 38 1 0.4007 -12.1151 5.0096 39 1 -0.2956 -13.2640 2.9460 40 1 -0.5535 -11.9863 0.8566 41 1 -0.1195 -9.5710 0.8257 42 1 2.7910 -4.3917 1.3285 43 1 2.2308 -5.6430 0.1924 44 1 1.0559 -3.9602 -1.1473 45 1 2.7480 -3.4466 -0.9328 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609338578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:54 Heat of formation + Delta-G solvation = 7.665709 kcal Electronic energy + Delta-G solvation = -26134.279670 eV Core-core repulsion = 22537.296590 eV Total energy + Delta-G solvation = -3596.983080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25751 -40.41075 -38.96618 -37.32060 -36.10378 -34.03165 -33.26302 -31.92324 -31.40353 -30.26731 -29.93506 -26.97690 -24.81626 -24.12922 -23.92363 -23.30585 -22.23622 -21.36400 -20.93718 -19.32234 -18.55268 -17.80207 -17.36491 -16.95520 -16.65550 -16.34520 -16.07187 -15.69333 -15.47982 -15.34528 -14.95744 -14.77211 -14.64166 -14.36669 -14.10567 -13.67164 -13.61598 -13.30465 -13.25363 -12.94555 -12.89405 -12.63431 -12.56936 -12.49269 -12.25960 -12.05527 -11.92391 -11.90775 -11.63190 -11.42406 -11.22118 -11.18345 -10.57512 -10.17639 -9.71090 -8.72171 -8.66658 -7.88130 -5.40017 0.37810 0.45624 1.32861 1.48595 1.50308 1.57282 1.96152 2.50712 2.75299 2.89140 3.29174 3.54139 3.62139 3.65171 3.84327 4.00396 4.14648 4.16928 4.17638 4.28008 4.36968 4.42511 4.49400 4.59933 4.61331 4.64184 4.74469 4.81850 4.94042 4.95046 5.00758 5.02670 5.11890 5.14282 5.23498 5.28632 5.43799 5.46215 5.51287 5.54454 5.63138 5.66164 5.70824 5.96286 6.14290 6.40347 6.76489 7.14524 7.33690 7.81565 8.36264 9.18464 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.035647 B = 0.002580 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.299107 B =10848.007917 C =11209.884003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.048 4.048 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.266 4.266 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.716 5.716 14 C 0.707 3.293 15 O -0.613 6.613 16 N -0.573 5.573 17 C 0.085 3.915 18 C -0.074 4.074 19 C -0.145 4.145 20 C -0.077 4.077 21 C -0.144 4.144 22 C -0.101 4.101 23 C -0.167 4.167 24 C 0.135 3.865 25 C -0.124 4.124 26 C 0.146 3.854 27 H 0.252 0.748 28 H -0.006 1.006 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.411 0.589 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.006 0.994 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 -22.606 15.768 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.243 4.243 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.167 4.167 12 C 0.076 3.924 13 N -0.370 5.370 14 C 0.409 3.591 15 O -0.493 6.493 16 N -0.299 5.299 17 C -0.035 4.035 18 C -0.111 4.111 19 C -0.149 4.149 20 C -0.095 4.095 21 C -0.163 4.163 22 C -0.120 4.120 23 C -0.188 4.188 24 C 0.039 3.961 25 C -0.164 4.164 26 C 0.020 3.980 27 H 0.061 0.939 28 H 0.012 0.988 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.248 0.752 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.176 0.824 39 H 0.172 0.828 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.024 0.976 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.471 -22.468 14.887 26.992 hybrid contribution 0.170 1.408 -0.556 1.523 sum 1.641 -21.060 14.331 25.527 Atomic orbital electron populations 1.70128 1.06690 1.26055 1.55380 1.25958 0.96213 1.01625 1.00515 0.85274 0.77464 0.78853 0.78396 1.20372 1.21974 1.19925 1.19475 0.91179 0.84877 1.44083 0.91587 1.44297 1.31716 1.04256 1.52986 1.20567 0.87181 0.96882 0.89962 1.22280 1.02003 0.93420 0.98961 1.20589 0.97113 0.85838 0.88866 1.45173 1.73342 1.03406 1.15082 1.15848 0.78231 0.81298 0.83683 1.90880 1.57357 1.81433 1.19631 1.45125 1.68069 1.05524 1.11164 1.22542 1.02758 1.00327 0.77891 1.21149 1.04639 0.89321 0.95960 1.20391 1.05342 0.94966 0.94177 1.20777 0.97382 0.91647 0.99710 1.21389 1.01626 1.01263 0.92021 1.21152 0.98648 0.92254 0.99899 1.20993 1.04717 0.95899 0.97234 1.18525 0.98710 0.82891 0.95975 1.22185 0.97557 0.98155 0.98502 1.20948 0.97452 0.86393 0.93218 0.93932 0.98837 0.91447 0.90432 0.90866 0.92663 0.75238 0.88326 0.88496 0.86861 0.86910 0.82402 0.82751 0.84378 0.87644 0.91418 0.92654 0.97621 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.18 11.04 21.65 0.24 -54.94 16 2 C -0.05 -2.65 5.06 84.86 0.43 -2.22 16 3 Si 0.97 44.43 29.57 68.60 2.03 46.46 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.27 -14.65 9.58 84.03 0.81 -13.85 16 8 H 0.07 3.53 7.85 -2.91 -0.02 3.51 16 9 N -0.61 -31.09 2.99 -699.08 -2.09 -33.17 16 10 C 0.18 8.67 5.25 86.36 0.45 9.12 16 11 C -0.13 -4.54 5.55 30.67 0.17 -4.37 16 12 C 0.18 6.40 2.38 45.02 0.11 6.50 16 13 N -0.72 -20.32 5.03 -457.69 -2.30 -22.63 16 14 C 0.71 22.96 8.38 179.06 1.50 24.46 16 15 O -0.61 -25.41 14.19 -4.00 -0.06 -25.47 16 16 N -0.57 -14.61 3.13 -646.30 -2.02 -16.63 16 17 C 0.09 1.22 6.34 86.62 0.55 1.77 16 18 C -0.07 -0.78 6.93 30.26 0.21 -0.57 16 19 C -0.15 -2.61 6.23 -19.64 -0.12 -2.73 16 20 C -0.08 -1.10 10.04 22.26 0.22 -0.87 16 21 C -0.14 -2.22 10.06 22.28 0.22 -2.00 16 22 C -0.10 -2.12 10.02 22.19 0.22 -1.90 16 23 C -0.17 -4.76 9.46 22.51 0.21 -4.55 16 24 C 0.13 3.52 6.62 38.27 0.25 3.77 16 25 C -0.12 -4.62 5.65 30.67 0.17 -4.45 16 26 C 0.15 6.52 6.52 86.36 0.56 7.08 16 27 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.07 3.60 6.11 -2.39 -0.01 3.58 16 30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.06 2.28 7.65 -2.39 -0.02 2.27 16 33 H 0.41 8.68 7.54 -92.71 -0.70 7.98 16 34 H 0.10 1.06 8.13 -2.39 -0.02 1.04 16 35 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 40 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.11 3.68 6.29 -2.91 -0.02 3.66 16 42 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 43 H 0.05 2.09 8.09 -2.38 -0.02 2.07 16 44 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 45 H 0.06 2.53 7.93 -2.38 -0.02 2.51 16 Total: -1.00 -74.38 358.53 2.07 -72.31 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.29 Total: 18.87 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 5.97 Total: 15.20 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -6.17 Total: -127.37 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.06 Total: -25.47 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -74.38 2.07 -72.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.977 kcal (2) G-P(sol) polarization free energy of solvation -74.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds