Wall clock time and date at job start Tue Mar 31 2020 12:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39761 * 120.09196 * 114.20016 * 3 2 1 5 5 C 1.37729 * 119.90178 * 180.02562 * 4 3 2 6 6 C 1.38966 * 120.09883 * 359.97438 * 5 4 3 7 7 O 1.35757 * 119.90862 * 180.02562 * 6 5 4 8 8 C 1.42897 * 117.00086 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.46904 * 179.97438 * 8 7 6 10 10 N 1.46893 * 109.47253 * 65.05614 * 9 8 7 11 11 C 1.46956 * 111.00227 * 199.57453 * 10 9 8 12 12 C 1.53052 * 109.36756 * 176.80853 * 11 10 9 13 13 N 1.46958 * 109.35972 * 58.40291 * 12 11 10 14 14 C 1.46900 * 111.00062 * 176.81024 * 13 12 11 15 15 C 1.50699 * 109.47230 * 293.80333 * 14 13 12 16 16 H 1.07998 * 119.99882 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00032 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00342 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00063 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47097 * 89.99866 * 19 17 15 21 21 H 1.48491 * 109.47382 * 210.00429 * 19 17 15 22 22 H 1.48504 * 109.47003 * 330.00454 * 19 17 15 23 23 C 1.46956 * 110.88357 * 300.67850 * 13 12 11 24 24 C 1.46958 * 110.99813 * 75.77537 * 10 9 8 25 25 C 1.38961 * 120.18607 * 0.27884 * 6 5 4 26 26 C 1.37736 * 120.09598 * 359.44775 * 25 6 5 27 27 H 1.07996 * 120.04978 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.95494 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47024 * 299.99705 * 8 7 6 30 30 H 1.09002 * 109.46938 * 60.00369 * 8 7 6 31 31 H 1.09003 * 109.47137 * 185.05850 * 9 8 7 32 32 H 1.08999 * 109.47340 * 305.05383 * 9 8 7 33 33 H 1.08997 * 109.48934 * 296.77957 * 11 10 9 34 34 H 1.09008 * 109.48718 * 56.84594 * 11 10 9 35 35 H 1.08999 * 109.49045 * 298.44219 * 12 11 10 36 36 H 1.08999 * 109.49098 * 178.36520 * 12 11 10 37 37 H 1.09003 * 109.46856 * 53.79628 * 14 13 12 38 38 H 1.08998 * 109.47561 * 173.79675 * 14 13 12 39 39 H 0.96995 * 120.00552 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.48862 * 299.35561 * 23 13 12 41 41 H 1.08999 * 109.50818 * 179.30262 * 23 13 12 42 42 H 1.08999 * 109.49123 * 303.15256 * 24 10 9 43 43 H 1.09001 * 109.48972 * 63.22800 * 24 10 9 44 44 H 1.08003 * 119.95068 * 179.70214 * 25 6 5 45 45 H 1.08001 * 120.04888 * 180.25357 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.4967 -1.1030 5 6 4.6458 0.4949 -1.0990 6 6 5.3389 0.0014 -0.0003 7 8 6.6965 0.0020 -0.0003 8 6 7.3455 -0.5201 1.1608 9 6 8.8623 -0.4377 0.9776 10 7 9.2711 0.9713 0.9060 11 6 10.5949 1.1046 0.2821 12 6 10.9486 2.5882 0.1541 13 7 10.9321 3.2097 1.4857 14 6 11.3409 4.6189 1.4141 15 6 12.7879 4.7018 1.0012 16 1 13.3479 3.7981 0.8114 17 6 13.3967 5.9314 0.8658 18 7 12.7149 7.0319 1.0974 19 14 15.1905 6.0343 0.3546 20 1 15.2801 6.1043 -1.1261 21 1 15.8048 7.2500 0.9458 22 1 15.9126 4.8299 0.8377 23 6 9.6083 3.0765 2.1096 24 6 9.2546 1.5928 2.2376 25 6 4.6464 -0.4975 1.0962 26 6 3.2690 -0.4944 1.1030 27 1 2.7307 0.8800 -1.9574 28 1 5.1880 0.8776 -1.9511 29 1 7.0524 0.0628 2.0339 30 1 7.0531 -1.5604 1.3035 31 1 9.3569 -0.9170 1.8225 32 1 9.1451 -0.9454 0.0555 33 1 11.3404 0.6052 0.9008 34 1 10.5782 0.6481 -0.7076 35 1 10.2183 3.0822 -0.4868 36 1 11.9426 2.6888 -0.2818 37 1 10.7238 5.1394 0.6818 38 1 11.2148 5.0839 2.3918 39 1 13.1431 7.8969 1.0017 40 1 8.8628 3.5760 1.4909 41 1 9.6246 3.5331 3.0992 42 1 8.2606 1.4923 2.6736 43 1 9.9849 1.0989 2.8785 44 1 5.1889 -0.8845 1.9461 45 1 2.7315 -0.8786 1.9574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:24 Heat of formation + Delta-G solvation = 11.549441 kcal Electronic energy + Delta-G solvation = -25035.625036 eV Core-core repulsion = 21438.810367 eV Total energy + Delta-G solvation = -3596.814669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.18077 -40.11389 -38.85892 -37.23139 -36.56895 -34.59118 -32.33811 -31.87603 -31.73722 -30.76934 -28.91494 -26.61508 -24.52095 -24.40012 -24.18184 -23.35255 -22.11720 -20.61187 -19.85104 -19.06350 -18.46750 -17.54722 -17.04410 -16.72236 -16.15692 -15.91058 -15.74988 -15.67691 -15.36806 -15.16169 -15.07698 -14.95740 -14.68474 -14.45276 -14.36561 -14.05878 -13.69043 -13.58442 -13.21685 -13.12459 -12.99324 -12.80529 -12.77797 -12.60167 -12.38678 -12.22333 -12.11463 -11.93257 -11.73358 -11.50352 -11.40705 -11.10749 -10.61619 -10.04943 -9.24573 -9.15938 -9.00534 -8.19990 -6.30584 -0.09659 0.38267 1.41965 1.43498 1.55062 1.65550 1.96589 2.28862 2.40872 2.92070 2.94798 2.96127 3.12212 3.32760 3.80771 3.90097 4.00402 4.02829 4.19237 4.22973 4.27896 4.41997 4.42997 4.46605 4.51716 4.54908 4.59558 4.71494 4.74299 4.86484 4.95071 5.02016 5.04181 5.05486 5.10052 5.11207 5.25137 5.29992 5.31885 5.38885 5.64529 5.67223 6.02832 6.11081 6.15241 6.36861 6.48161 6.54369 6.64225 6.85604 7.39265 8.91272 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023496 B = 0.002185 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.392265 B =12809.379304 C =13331.183606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.286 3.714 3 C -0.094 4.094 4 C -0.023 4.023 5 C -0.168 4.168 6 C 0.159 3.841 7 O -0.310 6.310 8 C 0.061 3.939 9 C 0.053 3.947 10 N -0.547 5.547 11 C 0.073 3.927 12 C 0.068 3.932 13 N -0.543 5.543 14 C 0.208 3.792 15 C -0.522 4.522 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.263 1.263 23 C 0.053 3.947 24 C 0.071 3.929 25 C -0.214 4.214 26 C -0.020 4.020 27 H 0.152 0.848 28 H 0.143 0.857 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.011 0.989 36 H 0.067 0.933 37 H -0.043 1.043 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.015 0.985 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.044 0.956 44 H 0.160 0.840 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.907 -20.742 -0.283 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.028 4.028 3 C -0.097 4.097 4 C -0.044 4.044 5 C -0.187 4.187 6 C 0.111 3.889 7 O -0.222 6.222 8 C -0.014 4.014 9 C -0.074 4.074 10 N -0.272 5.272 11 C -0.055 4.055 12 C -0.061 4.061 13 N -0.268 5.268 14 C 0.082 3.918 15 C -0.560 4.560 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.187 1.187 23 C -0.076 4.076 24 C -0.057 4.057 25 C -0.233 4.233 26 C -0.041 4.041 27 H 0.170 0.830 28 H 0.161 0.839 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.029 0.971 36 H 0.085 0.915 37 H -0.026 1.026 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.062 0.938 44 H 0.177 0.823 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.492 -20.504 -0.413 25.702 hybrid contribution 1.144 0.952 -0.099 1.492 sum -14.348 -19.552 -0.512 24.257 Atomic orbital electron populations 1.81286 1.13510 1.11375 1.09358 1.25898 0.92724 0.91922 0.92245 1.15985 0.83305 1.11537 0.98921 1.21104 0.92902 0.93663 0.96704 1.20526 0.93431 1.05572 0.99149 1.19616 0.83140 0.91925 0.94189 1.86194 1.15762 1.78038 1.42226 1.23144 0.91932 0.99692 0.86609 1.22256 0.93404 0.88168 1.03603 1.62094 1.27533 1.16382 1.21233 1.22069 0.89009 0.94530 0.99857 1.21988 0.99815 0.94637 0.89644 1.62233 1.25759 1.17355 1.21438 1.19349 0.94908 0.83713 0.93858 1.21445 0.96477 0.92573 1.45525 0.91744 1.25963 1.03256 0.95209 0.95480 1.70091 1.38735 0.98214 1.50562 0.85344 0.78769 0.77818 0.78442 1.19806 1.20834 1.18727 1.22164 0.89302 0.97429 0.98686 1.22118 1.01310 0.92573 0.89722 1.21409 0.94724 1.07290 0.99849 1.21164 0.93487 0.93176 0.96252 0.83010 0.83915 0.90972 0.88411 0.90337 0.89141 0.94048 0.88930 0.97086 0.91464 1.02569 0.97904 0.92701 0.96637 0.91311 0.88499 0.93810 0.82289 0.82875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.21 18.54 19.00 0.35 -10.86 16 2 C 0.29 5.13 15.33 88.33 1.35 6.48 16 3 C -0.09 -1.27 5.74 -21.30 -0.12 -1.39 16 4 C -0.02 -0.29 9.75 22.52 0.22 -0.07 16 5 C -0.17 -2.45 9.97 22.32 0.22 -2.23 16 6 C 0.16 2.41 6.69 22.62 0.15 2.56 16 7 O -0.31 -5.49 10.07 -90.83 -0.92 -6.40 16 8 C 0.06 0.73 4.93 71.98 0.35 1.09 16 9 C 0.05 0.80 5.39 86.31 0.46 1.27 16 10 N -0.55 -13.26 4.59 -895.70 -4.11 -17.37 16 11 C 0.07 2.04 5.56 86.31 0.48 2.52 16 12 C 0.07 2.63 5.43 86.31 0.47 3.09 16 13 N -0.54 -23.60 4.70 -900.27 -4.23 -27.84 16 14 C 0.21 11.32 4.72 85.56 0.40 11.72 16 15 C -0.52 -29.70 8.47 25.60 0.22 -29.48 16 16 H 0.06 3.56 7.13 -2.91 -0.02 3.54 16 17 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 18 N -0.94 -56.78 13.29 21.45 0.28 -56.50 16 19 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 C 0.05 1.89 5.61 86.31 0.48 2.37 16 24 C 0.07 1.79 5.43 86.31 0.47 2.26 16 25 C -0.21 -2.30 9.01 22.32 0.20 -2.10 16 26 C -0.02 -0.21 9.75 22.52 0.22 0.00 16 27 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 29 H 0.07 0.80 6.26 -2.39 -0.01 0.78 16 30 H 0.10 0.59 7.64 -2.39 -0.02 0.57 16 31 H 0.08 0.93 8.00 -2.39 -0.02 0.92 16 32 H 0.09 1.29 7.84 -2.39 -0.02 1.27 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 2.20 8.00 -2.38 -0.02 2.18 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.07 2.81 6.79 -2.39 -0.02 2.79 16 37 H -0.04 -2.60 8.12 -2.39 -0.02 -2.62 16 38 H 0.00 0.17 8.03 -2.39 -0.02 0.15 16 39 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 40 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 42 H 0.10 1.91 6.72 -2.39 -0.02 1.89 16 43 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.16 0.95 6.28 -2.91 -0.02 0.93 16 45 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -72.00 373.19 0.44 -71.56 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 0.98 Total: 2.76 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 6.05 Total: -1.50 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -7.70 Total: -112.56 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.92 Total: -6.40 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.00 0.44 -71.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.112 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds