Wall clock time and date at job start Tue Mar 31 2020 10:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21250 * 120.00263 * 2 1 4 4 C 1.47174 * 119.99932 * 180.02562 * 2 1 3 5 5 C 1.39850 * 120.17071 * 179.97438 * 4 2 1 6 6 C 1.37889 * 119.81980 * 180.02562 * 5 4 2 7 7 C 1.38395 * 120.17467 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.82492 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47343 * 89.99934 * 8 7 6 10 10 O 1.21289 * 119.99632 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00265 * 179.72152 * 9 8 7 12 12 C 1.46931 * 120.63066 * 0.28005 * 11 9 8 13 13 C 1.53189 * 108.77370 * 233.58207 * 12 11 9 14 14 C 1.53039 * 109.31275 * 305.36429 * 13 12 11 15 15 C 1.53040 * 109.54154 * 61.36610 * 14 13 12 16 16 H 1.08997 * 109.49509 * 58.58585 * 15 14 13 17 17 C 1.50699 * 109.49860 * 178.68250 * 15 14 13 18 18 H 1.07997 * 120.00206 * 35.18042 * 17 15 14 19 19 C 1.37877 * 119.99898 * 215.17316 * 17 15 14 20 20 N 1.31516 * 120.00276 * 185.18636 * 19 17 15 21 21 Si 1.86807 * 120.00109 * 5.19018 * 19 17 15 22 22 H 1.48499 * 109.47039 * 84.78335 * 21 19 17 23 23 H 1.48500 * 109.47111 * 204.78667 * 21 19 17 24 24 H 1.48506 * 109.46801 * 324.78751 * 21 19 17 25 25 C 1.46928 * 120.63356 * 179.97438 * 11 9 8 26 26 C 1.38400 * 120.35272 * 0.23188 * 7 6 5 27 27 C 1.37888 * 120.16931 * 359.48964 * 26 7 6 28 28 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47033 * 299.99815 * 1 2 3 30 30 H 1.08999 * 109.47410 * 59.99519 * 1 2 3 31 31 H 1.07994 * 120.09104 * 0.04230 * 5 4 2 32 32 H 1.08003 * 119.90676 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.46985 * 330.00122 * 8 7 6 34 34 H 1.08998 * 109.47266 * 209.99746 * 8 7 6 35 35 H 1.08997 * 109.58209 * 353.37059 * 12 11 9 36 36 H 1.09004 * 109.58454 * 113.65352 * 12 11 9 37 37 H 1.09001 * 109.49999 * 65.31110 * 13 12 11 38 38 H 1.09003 * 109.49683 * 185.41230 * 13 12 11 39 39 H 1.09000 * 109.46115 * 181.38898 * 14 13 12 40 40 H 1.09001 * 109.45995 * 301.34419 * 14 13 12 41 41 H 0.97000 * 120.00158 * 180.02562 * 20 19 17 42 42 H 1.09006 * 109.58828 * 246.20912 * 25 11 9 43 43 H 1.09007 * 109.58458 * 6.62985 * 25 11 9 44 44 H 1.07997 * 119.91987 * 179.72407 * 26 7 6 45 45 H 1.08007 * 120.09142 * 180.27139 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 3.6414 -1.2788 -0.0011 6 6 4.3235 -2.4771 -0.0022 7 6 3.6278 -3.6735 -0.0032 8 6 4.3813 -4.9786 -0.0050 9 6 4.6330 -5.4153 1.4153 10 8 4.2389 -4.7340 2.3381 11 7 5.2907 -6.5659 1.6600 12 6 5.7737 -7.4022 0.5527 13 6 5.2435 -8.8268 0.7431 14 6 5.6396 -9.3328 2.1321 15 6 5.0113 -8.4366 3.2018 16 1 3.9273 -8.4394 3.0878 17 6 5.3754 -8.9547 4.5693 18 1 6.3452 -9.3988 4.7380 19 6 4.4702 -8.8616 5.6052 20 7 4.8228 -9.2192 6.8207 21 14 2.7430 -8.2275 5.2822 22 1 1.8845 -9.3456 4.8153 23 1 2.1811 -7.6617 6.5350 24 1 2.7905 -7.1711 4.2396 25 6 5.5441 -7.0046 3.0392 26 6 2.2438 -3.6778 -0.0081 27 6 1.5472 -2.4878 -0.0013 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.1856 -0.3460 -0.0004 32 1 5.4035 -2.4820 -0.0022 33 1 5.3335 -4.8477 -0.5190 34 1 3.7920 -5.7377 -0.5194 35 1 5.4110 -7.0007 -0.3935 36 1 6.8637 -7.4128 0.5513 37 1 4.1573 -8.8259 0.6525 38 1 5.6721 -9.4792 -0.0177 39 1 5.2848 -10.3553 2.2609 40 1 6.7249 -9.3101 2.2310 41 1 4.1859 -9.1541 7.5494 42 1 6.6158 -6.9855 3.2376 43 1 5.0299 -6.3407 3.7341 44 1 1.7080 -4.6154 -0.0134 45 1 0.4671 -2.4926 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617294034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:44 Heat of formation + Delta-G solvation = -57.750547 kcal Electronic energy + Delta-G solvation = -25838.669965 eV Core-core repulsion = 22206.557472 eV Total energy + Delta-G solvation = -3632.112493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39818 -39.70025 -38.36878 -36.89071 -33.61499 -33.11067 -31.93192 -31.50609 -30.64356 -30.11887 -27.91022 -25.24681 -24.73364 -22.90864 -22.63915 -21.91579 -20.09027 -19.68611 -18.55365 -17.26891 -17.09396 -16.68200 -16.09621 -15.76185 -15.21504 -15.09457 -15.01964 -14.41563 -14.24918 -14.04228 -13.89095 -13.75724 -13.64362 -13.07621 -12.80248 -12.64543 -12.55365 -12.43731 -12.36692 -12.19124 -11.91631 -11.88088 -11.26835 -11.16158 -11.08138 -10.77170 -10.59852 -10.10400 -9.97516 -9.74795 -9.70644 -9.37729 -9.18770 -9.13440 -8.84847 -8.60689 -8.09522 -6.14531 -4.15523 0.45728 1.24769 2.18587 2.92091 3.27286 3.35140 3.38435 3.45430 3.70574 3.82064 4.39649 4.47232 4.51138 4.71081 4.78819 4.79908 4.98244 5.07108 5.10159 5.13962 5.17628 5.24473 5.29315 5.35320 5.38799 5.48373 5.59981 5.68841 5.79379 5.84207 5.94872 6.08774 6.10486 6.20554 6.23686 6.36660 6.37881 6.57027 6.62786 6.70825 6.75772 6.87289 7.22253 7.28479 7.31466 7.69196 7.84500 8.43194 8.54197 8.90629 9.48829 10.97984 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.003257 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.530378 B = 8595.788910 C = 9579.973841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.398 3.602 3 O -0.465 6.465 4 C -0.181 4.181 5 C -0.058 4.058 6 C -0.119 4.119 7 C -0.023 4.023 8 C -0.110 4.110 9 C 0.508 3.492 10 O -0.538 6.538 11 N -0.609 5.609 12 C 0.108 3.892 13 C -0.138 4.138 14 C -0.106 4.106 15 C 0.007 3.993 16 H 0.034 0.966 17 C -0.515 4.515 18 H 0.075 0.925 19 C 0.076 3.924 20 N -0.895 5.895 21 Si 0.872 3.128 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.260 1.260 25 C 0.114 3.886 26 C -0.120 4.120 27 C -0.071 4.071 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.265 0.735 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 10.209 -19.840 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.277 3.723 3 O -0.341 6.341 4 C -0.182 4.182 5 C -0.076 4.076 6 C -0.137 4.137 7 C -0.024 4.024 8 C -0.150 4.150 9 C 0.295 3.705 10 O -0.415 6.415 11 N -0.342 5.342 12 C -0.015 4.015 13 C -0.176 4.176 14 C -0.143 4.143 15 C -0.013 4.013 16 H 0.053 0.947 17 C -0.553 4.553 18 H 0.093 0.907 19 C -0.127 4.127 20 N -0.532 5.532 21 Si 0.699 3.301 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.184 1.184 25 C -0.007 4.007 26 C -0.138 4.138 27 C -0.089 4.089 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.146 0.854 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.991 11.099 -19.127 22.670 hybrid contribution -0.906 0.010 0.050 0.908 sum -5.897 11.110 -19.077 22.850 Atomic orbital electron populations 1.22245 0.93911 1.04906 1.04878 1.22504 0.91641 0.87644 0.70532 1.90524 1.72146 1.34435 1.37034 1.20467 0.94662 0.94660 1.08385 1.21337 0.93137 0.98486 0.94664 1.20981 1.00197 0.91557 1.00951 1.19654 0.93745 0.94049 0.94937 1.20851 1.02050 0.95655 0.96467 1.20312 0.78557 0.81229 0.90447 1.90727 1.50875 1.53809 1.46061 1.48523 1.55625 1.21034 1.09026 1.21710 0.99091 0.91662 0.89040 1.22008 1.01022 0.95120 0.99440 1.21585 1.00394 0.99926 0.92435 1.19543 0.96054 0.90261 0.95449 0.94749 1.20894 1.03041 1.39864 0.91542 0.90679 1.25077 0.98518 0.94232 0.94884 1.69899 1.35545 1.47768 0.99979 0.86915 0.85093 0.79895 0.78182 1.20258 1.21474 1.18402 1.22532 1.00450 0.98536 0.79178 1.20992 0.93553 0.98367 1.00859 1.21435 0.99939 0.91373 0.96175 0.89711 0.88742 0.88833 0.85020 0.85466 0.87884 0.87831 0.90814 0.91518 0.92150 0.91683 0.92174 0.92719 0.92488 0.92116 0.90017 0.85420 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 10.19 36.01 0.37 -1.04 16 2 C 0.40 4.36 7.23 -30.68 -0.22 4.14 16 3 O -0.46 -6.57 17.09 5.58 0.10 -6.48 16 4 C -0.18 -2.08 5.87 -105.06 -0.62 -2.70 16 5 C -0.06 -0.70 9.60 -39.11 -0.38 -1.08 16 6 C -0.12 -1.42 9.68 -39.65 -0.38 -1.80 16 7 C -0.02 -0.28 4.38 -104.50 -0.46 -0.74 16 8 C -0.11 -1.25 4.17 -29.03 -0.12 -1.37 16 9 C 0.51 8.53 7.69 -10.99 -0.08 8.45 16 10 O -0.54 -11.54 15.45 5.55 0.09 -11.45 16 11 N -0.61 -10.28 2.97 -172.47 -0.51 -10.79 16 12 C 0.11 1.35 6.34 -3.71 -0.02 1.32 16 13 C -0.14 -1.87 6.08 -26.61 -0.16 -2.03 16 14 C -0.11 -1.90 5.15 -26.69 -0.14 -2.04 16 15 C 0.01 0.15 1.94 -91.41 -0.18 -0.03 16 16 H 0.03 0.81 5.27 -51.93 -0.27 0.53 16 17 C -0.52 -13.91 8.86 -34.44 -0.31 -14.21 16 18 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 19 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 20 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 21 Si 0.87 21.89 27.00 -169.99 -4.59 17.30 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.26 -6.57 6.81 56.52 0.38 -6.19 16 25 C 0.11 2.40 5.73 -3.47 -0.02 2.38 16 26 C -0.12 -1.36 9.67 -39.65 -0.38 -1.75 16 27 C -0.07 -0.73 9.45 -39.10 -0.37 -1.10 16 28 H 0.08 0.44 5.61 -51.93 -0.29 0.15 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.13 1.51 7.65 -52.49 -0.40 1.11 16 32 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 33 H 0.10 0.89 7.88 -51.93 -0.41 0.48 16 34 H 0.10 0.94 7.63 -51.93 -0.40 0.54 16 35 H 0.07 0.67 5.93 -51.93 -0.31 0.36 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.98 7.00 -51.92 -0.36 1.62 16 44 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.13 0.95 5.93 -52.48 -0.31 0.64 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -34.81 365.50 -8.76 -43.57 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.56 Total: 0.12 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.57 Total: -11.53 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.26 Total: -37.05 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.18 Total: -17.93 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.59 Total: 17.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.81 -8.76 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617294034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.176 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds