Wall clock time and date at job start Tue Mar 31 2020 10:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21250 * 120.00263 * 2 1 4 4 C 1.47174 * 119.99932 * 180.02562 * 2 1 3 5 5 C 1.39850 * 120.17071 * 179.97438 * 4 2 1 6 6 C 1.37889 * 119.81980 * 180.02562 * 5 4 2 7 7 C 1.38395 * 120.17467 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.82492 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47343 * 89.99934 * 8 7 6 10 10 O 1.21289 * 119.99632 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00265 * 179.72152 * 9 8 7 12 12 C 1.46931 * 120.63066 * 0.28005 * 11 9 8 13 13 C 1.53189 * 108.77370 * 233.58207 * 12 11 9 14 14 C 1.53039 * 109.31275 * 305.36429 * 13 12 11 15 15 C 1.53040 * 109.54154 * 61.36610 * 14 13 12 16 16 H 1.08997 * 109.49509 * 58.58585 * 15 14 13 17 17 C 1.50699 * 109.49860 * 178.68250 * 15 14 13 18 18 H 1.07997 * 120.00206 * 35.18042 * 17 15 14 19 19 C 1.37877 * 119.99898 * 215.17316 * 17 15 14 20 20 N 1.31516 * 120.00276 * 185.18636 * 19 17 15 21 21 Si 1.86807 * 120.00109 * 5.19018 * 19 17 15 22 22 H 1.48499 * 109.47039 * 84.78335 * 21 19 17 23 23 H 1.48500 * 109.47111 * 204.78667 * 21 19 17 24 24 H 1.48506 * 109.46801 * 324.78751 * 21 19 17 25 25 C 1.46928 * 120.63356 * 179.97438 * 11 9 8 26 26 C 1.38400 * 120.35272 * 0.23188 * 7 6 5 27 27 C 1.37888 * 120.16931 * 359.48964 * 26 7 6 28 28 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47033 * 299.99815 * 1 2 3 30 30 H 1.08999 * 109.47410 * 59.99519 * 1 2 3 31 31 H 1.07994 * 120.09104 * 0.04230 * 5 4 2 32 32 H 1.08003 * 119.90676 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.46985 * 330.00122 * 8 7 6 34 34 H 1.08998 * 109.47266 * 209.99746 * 8 7 6 35 35 H 1.08997 * 109.58209 * 353.37059 * 12 11 9 36 36 H 1.09004 * 109.58454 * 113.65352 * 12 11 9 37 37 H 1.09001 * 109.49999 * 65.31110 * 13 12 11 38 38 H 1.09003 * 109.49683 * 185.41230 * 13 12 11 39 39 H 1.09000 * 109.46115 * 181.38898 * 14 13 12 40 40 H 1.09001 * 109.45995 * 301.34419 * 14 13 12 41 41 H 0.97000 * 120.00158 * 180.02562 * 20 19 17 42 42 H 1.09006 * 109.58828 * 246.20912 * 25 11 9 43 43 H 1.09007 * 109.58458 * 6.62985 * 25 11 9 44 44 H 1.07997 * 119.91987 * 179.72407 * 26 7 6 45 45 H 1.08007 * 120.09142 * 180.27139 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 3.6414 -1.2788 -0.0011 6 6 4.3235 -2.4771 -0.0022 7 6 3.6278 -3.6735 -0.0032 8 6 4.3813 -4.9786 -0.0050 9 6 4.6330 -5.4153 1.4153 10 8 4.2389 -4.7340 2.3381 11 7 5.2907 -6.5659 1.6600 12 6 5.7737 -7.4022 0.5527 13 6 5.2435 -8.8268 0.7431 14 6 5.6396 -9.3328 2.1321 15 6 5.0113 -8.4366 3.2018 16 1 3.9273 -8.4394 3.0878 17 6 5.3754 -8.9547 4.5693 18 1 6.3452 -9.3988 4.7380 19 6 4.4702 -8.8616 5.6052 20 7 4.8228 -9.2192 6.8207 21 14 2.7430 -8.2275 5.2822 22 1 1.8845 -9.3456 4.8153 23 1 2.1811 -7.6617 6.5350 24 1 2.7905 -7.1711 4.2396 25 6 5.5441 -7.0046 3.0392 26 6 2.2438 -3.6778 -0.0081 27 6 1.5472 -2.4878 -0.0013 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 4.1856 -0.3460 -0.0004 32 1 5.4035 -2.4820 -0.0022 33 1 5.3335 -4.8477 -0.5190 34 1 3.7920 -5.7377 -0.5194 35 1 5.4110 -7.0007 -0.3935 36 1 6.8637 -7.4128 0.5513 37 1 4.1573 -8.8259 0.6525 38 1 5.6721 -9.4792 -0.0177 39 1 5.2848 -10.3553 2.2609 40 1 6.7249 -9.3101 2.2310 41 1 4.1859 -9.1541 7.5494 42 1 6.6158 -6.9855 3.2376 43 1 5.0299 -6.3407 3.7341 44 1 1.7080 -4.6154 -0.0134 45 1 0.4671 -2.4926 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617294034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:43 Heat of formation + Delta-G solvation = -79.299861 kcal Electronic energy + Delta-G solvation = -25839.604413 eV Core-core repulsion = 22206.557472 eV Total energy + Delta-G solvation = -3633.046942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42441 -40.79881 -39.33468 -38.27143 -35.29353 -34.23183 -33.50068 -32.36245 -32.06871 -30.94820 -28.86748 -26.99002 -26.03795 -23.83592 -23.52721 -23.30650 -21.36471 -20.75551 -19.90655 -18.96323 -18.15531 -18.04916 -17.00268 -16.87651 -16.50517 -16.09590 -16.02675 -15.93140 -15.34325 -15.18798 -15.09345 -14.94793 -14.65352 -14.56364 -14.30879 -13.99486 -13.74130 -13.43555 -13.04787 -13.01093 -12.98621 -12.93976 -12.92162 -12.68741 -12.48532 -11.99580 -11.93961 -11.72522 -11.61182 -11.27387 -11.06979 -10.82173 -10.76694 -10.71341 -9.96649 -9.78341 -9.51318 -8.36032 -6.38354 -0.40046 0.41374 1.24451 1.31821 1.34207 1.41174 1.68482 2.15268 2.28177 2.80122 3.02921 3.08018 3.59251 3.74561 3.77574 3.95599 4.07119 4.10892 4.19021 4.25358 4.28971 4.35327 4.50811 4.53495 4.59408 4.61568 4.61738 4.64453 4.73742 4.82780 4.90441 4.98830 5.02944 5.04538 5.08128 5.15796 5.26916 5.28800 5.39752 5.45042 5.52490 5.60681 5.66383 5.75056 5.89826 6.28058 6.48038 6.58868 6.70982 7.26313 7.28381 8.80522 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.003257 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.530378 B = 8595.788910 C = 9579.973841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.396 3.604 3 O -0.508 6.508 4 C -0.197 4.197 5 C -0.078 4.078 6 C -0.129 4.129 7 C -0.039 4.039 8 C -0.097 4.097 9 C 0.501 3.499 10 O -0.594 6.594 11 N -0.611 5.611 12 C 0.102 3.898 13 C -0.129 4.129 14 C -0.104 4.104 15 C 0.006 3.994 16 H 0.025 0.975 17 C -0.512 4.512 18 H 0.041 0.959 19 C 0.019 3.981 20 N -0.944 5.944 21 Si 0.935 3.065 22 H -0.258 1.258 23 H -0.292 1.292 24 H -0.265 1.265 25 C 0.125 3.875 26 C -0.131 4.131 27 C -0.066 4.066 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.266 0.734 42 H 0.055 0.945 43 H 0.040 0.960 44 H 0.145 0.855 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 9.858 -23.714 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.278 3.722 3 O -0.387 6.387 4 C -0.197 4.197 5 C -0.097 4.097 6 C -0.147 4.147 7 C -0.040 4.040 8 C -0.136 4.136 9 C 0.291 3.709 10 O -0.475 6.475 11 N -0.343 5.343 12 C -0.019 4.019 13 C -0.167 4.167 14 C -0.142 4.142 15 C -0.014 4.014 16 H 0.043 0.957 17 C -0.550 4.550 18 H 0.059 0.941 19 C -0.179 4.179 20 N -0.584 5.584 21 Si 0.760 3.240 22 H -0.183 1.183 23 H -0.219 1.219 24 H -0.190 1.190 25 C 0.002 3.998 26 C -0.149 4.149 27 C -0.084 4.084 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.163 0.837 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.556 10.711 -23.062 26.260 hybrid contribution -0.316 0.107 1.262 1.305 sum -6.872 10.819 -21.801 25.289 Atomic orbital electron populations 1.22285 0.90435 1.06716 1.05903 1.23108 0.93528 0.86745 0.68821 1.90509 1.73329 1.35622 1.39267 1.20745 0.94666 0.95725 1.08613 1.21479 0.93981 0.98600 0.95597 1.21171 1.00892 0.91645 1.01022 1.19878 0.94411 0.94375 0.95305 1.20890 1.04340 0.95864 0.92493 1.21318 0.76996 0.80230 0.92356 1.90707 1.52993 1.55417 1.48426 1.48526 1.55762 1.21951 1.08105 1.22120 1.00211 0.90373 0.89222 1.21968 1.01459 0.96377 0.96918 1.21494 0.99954 0.98599 0.94191 1.19507 0.95789 0.91812 0.94288 0.95689 1.21260 1.01340 1.38378 0.94067 0.94088 1.25846 1.02345 0.95016 0.94717 1.70032 1.36918 1.50423 1.01009 0.85918 0.81046 0.79491 0.77498 1.18274 1.21887 1.18963 1.21883 0.99332 0.96784 0.81769 1.21347 0.93612 0.99468 1.00488 1.21793 1.01608 0.90394 0.94576 0.87518 0.88045 0.87221 0.85660 0.84506 0.84462 0.84388 0.85848 0.90033 0.92001 0.87652 0.92998 0.92779 0.92525 0.92622 0.94118 0.83729 0.81604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 10.19 71.24 0.73 -1.51 16 2 C 0.40 8.35 7.23 28.04 0.20 8.55 16 3 O -0.51 -14.57 17.09 -2.94 -0.05 -14.62 16 4 C -0.20 -4.31 5.87 -20.15 -0.12 -4.43 16 5 C -0.08 -1.89 9.60 22.58 0.22 -1.67 16 6 C -0.13 -2.93 9.68 22.22 0.22 -2.72 16 7 C -0.04 -0.85 4.38 -19.79 -0.09 -0.93 16 8 C -0.10 -1.76 4.17 29.10 0.12 -1.64 16 9 C 0.50 15.69 7.69 87.66 0.67 16.36 16 10 O -0.59 -25.42 15.45 -3.06 -0.05 -25.47 16 11 N -0.61 -19.15 2.97 -817.97 -2.43 -21.57 16 12 C 0.10 2.02 6.34 86.36 0.55 2.57 16 13 C -0.13 -2.90 6.08 30.67 0.19 -2.71 16 14 C -0.10 -3.58 5.15 30.62 0.16 -3.42 16 15 C 0.01 0.26 1.94 -11.31 -0.02 0.23 16 16 H 0.02 1.16 5.27 -2.39 -0.01 1.14 16 17 C -0.51 -28.61 8.86 25.60 0.23 -28.39 16 18 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 19 C 0.02 1.10 5.47 84.65 0.46 1.56 16 20 N -0.94 -59.34 13.96 21.45 0.30 -59.04 16 21 Si 0.93 46.48 27.00 68.60 1.85 48.33 16 22 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 24 H -0.26 -13.28 6.81 99.48 0.68 -12.61 16 25 C 0.13 5.32 5.73 86.52 0.50 5.81 16 26 C -0.13 -2.60 9.67 22.23 0.22 -2.38 16 27 C -0.07 -1.18 9.45 22.58 0.21 -0.97 16 28 H 0.11 0.71 5.61 -2.39 -0.01 0.69 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.13 3.03 7.65 -2.91 -0.02 3.01 16 32 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.14 1.58 7.88 -2.39 -0.02 1.56 16 34 H 0.14 1.60 7.63 -2.39 -0.02 1.59 16 35 H 0.12 1.31 5.93 -2.39 -0.01 1.30 16 36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.04 2.04 7.00 -2.38 -0.02 2.03 16 44 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 45 H 0.17 1.70 5.93 -2.91 -0.02 1.68 16 Total: -1.00 -83.05 365.50 5.02 -78.03 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.96 Total: 10.03 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 4.43 Total: -15.68 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -2.13 Total: -80.61 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.10 Total: -40.09 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.85 Total: 48.33 kcal Total: -83.05 5.02 -78.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617294034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.273 kcal (2) G-P(sol) polarization free energy of solvation -83.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds