Wall clock time and date at job start Tue Mar 31 2020 10:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.46736 * 2 1 4 4 C 1.46896 * 110.99965 * 299.18921 * 3 2 1 5 5 C 1.50699 * 109.47475 * 293.48412 * 4 3 2 6 6 H 1.08002 * 119.99589 * 354.97318 * 5 4 3 7 7 C 1.37875 * 120.00322 * 174.96267 * 5 4 3 8 8 N 1.31514 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00066 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47332 * 90.00169 * 9 7 5 11 11 H 1.48504 * 109.47149 * 210.00010 * 9 7 5 12 12 H 1.48499 * 109.47601 * 330.00191 * 9 7 5 13 13 C 1.46901 * 111.00139 * 63.14767 * 3 2 1 14 14 C 1.50697 * 109.47247 * 66.04061 * 13 3 2 15 15 C 1.35702 * 120.91624 * 259.97974 * 14 13 3 16 16 C 1.41186 * 119.80137 * 180.02562 * 15 14 13 17 17 O 1.21774 * 119.16157 * 179.97438 * 16 15 14 18 18 O 1.34198 * 121.67844 * 0.02743 * 16 15 14 19 19 C 1.35001 * 121.47461 * 359.94932 * 18 16 15 20 20 C 1.38914 * 120.79403 * 180.25953 * 19 18 16 21 21 C 1.50700 * 120.08994 * 0.05697 * 20 19 18 22 22 C 1.37911 * 119.82110 * 180.29347 * 20 19 18 23 23 C 1.50698 * 119.66341 * 179.76601 * 22 20 19 24 24 C 1.38761 * 120.67429 * 359.49076 * 22 20 19 25 25 C 1.36658 * 120.49158 * 0.25090 * 24 22 20 26 26 C 1.39836 * 119.72006 * 0.02562 * 25 24 22 27 27 H 1.08998 * 109.47343 * 60.51776 * 1 2 3 28 28 H 1.09009 * 109.46887 * 180.51478 * 1 2 3 29 29 H 1.09001 * 109.47595 * 300.51566 * 1 2 3 30 30 H 1.09004 * 109.47150 * 240.00126 * 2 1 3 31 31 H 1.09000 * 109.47581 * 119.99989 * 2 1 3 32 32 H 1.08997 * 109.47514 * 53.48928 * 4 3 2 33 33 H 1.09000 * 109.47074 * 173.49002 * 4 3 2 34 34 H 0.96998 * 119.99670 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.46517 * 306.04395 * 13 3 2 36 36 H 1.08993 * 109.47067 * 186.04437 * 13 3 2 37 37 H 1.08006 * 120.10412 * 0.02562 * 15 14 13 38 38 H 1.08997 * 109.47250 * 270.23449 * 21 20 19 39 39 H 1.09004 * 109.47133 * 30.23527 * 21 20 19 40 40 H 1.09007 * 109.47198 * 150.23151 * 21 20 19 41 41 H 1.09000 * 109.47734 * 269.72291 * 23 22 20 42 42 H 1.09007 * 109.47014 * 149.72524 * 23 22 20 43 43 H 1.08996 * 109.47071 * 29.72849 * 23 22 20 44 44 H 1.07999 * 119.75241 * 180.27912 * 24 22 20 45 45 H 1.07998 * 120.14314 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.5644 2.1043 -1.1972 5 6 2.2119 1.5058 -2.4194 6 1 2.9543 0.7288 -2.3114 7 6 1.8563 1.9498 -3.6753 8 7 0.9525 2.8960 -3.8068 9 14 2.6584 1.2073 -5.1902 10 1 1.8634 0.0402 -5.6495 11 1 2.7131 2.2250 -6.2703 12 1 4.0363 0.7666 -4.8551 13 6 1.6110 2.0879 1.2235 14 6 2.2958 1.4655 2.4129 15 6 1.6428 0.5827 3.2103 16 6 2.3070 0.0141 4.3189 17 8 1.7099 -0.7764 5.0269 18 8 3.5794 0.3235 4.6128 19 6 4.2851 1.1938 3.8598 20 6 5.6032 1.4998 4.1739 21 6 6.2644 0.8578 5.3663 22 6 6.3036 2.3964 3.3945 23 6 7.7317 2.7298 3.7415 24 6 5.7086 2.9904 2.2906 25 6 4.4148 2.7000 1.9601 26 6 3.6856 1.7978 2.7409 27 1 -0.3634 0.5058 -0.8946 28 1 -0.3633 -1.0277 0.0092 29 1 -0.3634 0.5218 0.8853 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.4810 2.0199 -1.2819 33 1 1.8418 3.1553 -1.1171 34 1 0.7026 3.2087 -4.6903 35 1 0.5305 2.0091 1.3441 36 1 1.8928 3.1382 1.1505 37 1 0.6181 0.3157 2.9976 38 1 6.0989 1.4748 6.2495 39 1 5.8377 -0.1319 5.5292 40 1 7.3350 0.7661 5.1825 41 1 7.7514 3.5850 4.4171 42 1 8.2795 2.9733 2.8311 43 1 8.1972 1.8723 4.2273 44 1 6.2723 3.6871 1.6879 45 1 3.9574 3.1653 1.0994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746463176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:40 Heat of formation + Delta-G solvation = -32.939386 kcal Electronic energy + Delta-G solvation = -26620.874309 eV Core-core repulsion = 22989.837708 eV Total energy + Delta-G solvation = -3631.036601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88406 -39.22169 -37.98942 -37.21479 -35.05487 -32.82755 -32.33673 -31.47249 -29.81741 -28.11082 -27.63703 -26.66048 -25.28517 -23.93259 -23.38587 -22.19572 -21.18293 -19.48059 -18.72941 -17.86637 -17.28157 -16.71041 -16.29545 -15.52681 -15.12216 -15.00746 -14.75846 -14.63430 -14.41843 -14.21277 -13.81064 -13.47781 -13.10649 -13.03159 -12.83833 -12.78144 -12.59908 -12.22297 -12.12041 -11.93931 -11.87073 -11.67144 -11.39735 -11.22519 -11.14539 -11.06267 -10.82909 -10.66252 -10.24410 -10.14781 -9.98302 -9.83848 -9.31226 -8.59718 -8.52388 -8.27525 -7.40870 -6.11751 -4.13146 0.28428 1.07322 1.56999 2.47113 2.88814 3.26218 3.33272 3.36955 3.68444 4.15644 4.28940 4.37398 4.44356 4.67745 4.79549 4.87178 4.96102 5.03022 5.18253 5.24543 5.30302 5.38736 5.49390 5.50146 5.60217 5.63431 5.68389 5.71535 5.76924 5.85123 5.92140 6.01718 6.06443 6.08120 6.16639 6.32955 6.37129 6.45219 6.59536 6.64178 6.81324 7.12526 7.25425 7.29875 7.55026 7.67932 7.91021 8.02403 8.38876 8.94647 9.51665 10.98768 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.004087 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.673106 B = 6849.816709 C = 8298.619589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.524 5.524 4 C 0.189 3.811 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.071 3.929 14 C 0.066 3.934 15 C -0.270 4.270 16 C 0.514 3.486 17 O -0.478 6.478 18 O -0.273 6.273 19 C 0.144 3.856 20 C -0.111 4.111 21 C -0.110 4.110 22 C -0.038 4.038 23 C -0.120 4.120 24 C -0.142 4.142 25 C -0.033 4.033 26 C -0.141 4.141 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.007 0.993 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.158 0.842 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.133 0.867 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 1.037 14.799 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.248 5.248 4 C 0.064 3.936 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.057 4.057 14 C 0.064 3.936 15 C -0.290 4.290 16 C 0.364 3.636 17 O -0.368 6.368 18 O -0.184 6.184 19 C 0.100 3.900 20 C -0.112 4.112 21 C -0.167 4.167 22 C -0.038 4.038 23 C -0.176 4.176 24 C -0.160 4.160 25 C -0.051 4.051 26 C -0.142 4.142 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.176 0.824 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.151 0.849 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.606 0.676 15.132 17.936 hybrid contribution -0.847 -0.310 -1.157 1.467 sum 8.758 0.366 13.975 16.497 Atomic orbital electron populations 1.22388 0.99020 1.01326 1.02057 1.22034 0.92454 0.90980 1.01740 1.62475 1.59181 1.02145 1.01018 1.19846 0.94947 0.93508 0.85276 1.21089 1.22616 1.21030 0.89766 0.91860 1.24953 0.95190 0.95164 0.99081 1.69945 1.31678 1.28578 1.23522 0.86527 0.79869 0.78794 0.82426 1.20735 1.21263 1.19770 1.21262 0.97182 0.98658 0.88606 1.21719 0.90641 0.88914 0.92341 1.22385 1.03659 1.04359 0.98582 1.19213 0.78071 0.81089 0.85189 1.90942 1.59886 1.33862 1.52099 1.83472 1.27874 1.54383 1.52705 1.18854 0.91002 0.90010 0.90175 1.19039 0.90680 1.01052 1.00385 1.20725 1.00320 1.00914 0.94691 1.19764 0.96207 0.94020 0.93788 1.20941 0.91613 1.02414 1.02656 1.20823 0.95542 1.01941 0.97697 1.21089 0.93529 0.93425 0.97011 1.18986 0.94841 1.02911 0.97419 0.90956 0.93131 0.93750 0.89663 0.92979 0.97506 0.95540 0.92867 0.92842 0.89231 0.82421 0.91031 0.91047 0.90799 0.90526 0.90875 0.90727 0.84884 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 9.25 37.16 0.34 -2.89 16 2 C 0.06 1.03 5.64 -3.82 -0.02 1.01 16 3 N -0.52 -10.02 4.69 -237.52 -1.11 -11.14 16 4 C 0.19 4.40 4.50 -4.98 -0.02 4.38 16 5 C -0.51 -13.20 8.41 -34.44 -0.29 -13.49 16 6 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.25 13.29 55.43 0.74 -24.52 16 9 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 13 C 0.07 1.12 4.29 -4.98 -0.02 1.10 16 14 C 0.07 0.98 4.78 -102.15 -0.49 0.49 16 15 C -0.27 -4.05 8.58 -39.37 -0.34 -4.39 16 16 C 0.51 8.49 7.89 31.85 0.25 8.75 16 17 O -0.48 -9.05 17.91 -19.58 -0.35 -9.40 16 18 O -0.27 -4.25 8.94 -20.66 -0.18 -4.44 16 19 C 0.14 2.05 6.73 -38.45 -0.26 1.79 16 20 C -0.11 -1.31 5.89 -104.49 -0.62 -1.92 16 21 C -0.11 -1.03 9.39 36.01 0.34 -0.69 16 22 C -0.04 -0.39 5.88 -104.55 -0.61 -1.01 16 23 C -0.12 -0.84 9.59 36.00 0.35 -0.50 16 24 C -0.14 -1.58 9.61 -39.96 -0.38 -1.97 16 25 C -0.03 -0.43 9.39 -39.56 -0.37 -0.80 16 26 C -0.14 -2.03 5.87 -105.04 -0.62 -2.65 16 27 H 0.07 1.43 6.31 -51.93 -0.33 1.10 16 28 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.04 0.69 6.09 -51.93 -0.32 0.37 16 30 H 0.09 1.72 6.97 -51.93 -0.36 1.36 16 31 H 0.05 0.89 6.48 -51.93 -0.34 0.56 16 32 H 0.01 0.18 6.01 -51.93 -0.31 -0.13 16 33 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.05 0.83 5.98 -51.93 -0.31 0.52 16 36 H 0.09 1.34 6.96 -51.93 -0.36 0.98 16 37 H 0.16 2.22 7.81 -52.48 -0.41 1.81 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.74 7.59 -51.93 -0.39 0.34 16 40 H 0.07 0.53 5.92 -51.92 -0.31 0.22 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 43 H 0.07 0.45 5.90 -51.93 -0.31 0.15 16 44 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.15 2.03 6.78 -52.49 -0.36 1.67 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -29.80 359.76 -9.51 -39.32 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.14 Total: 0.34 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.86 Total: -11.34 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.38 Total: -35.65 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.54 Total: -13.84 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.80 -9.51 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746463176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.376 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds