Wall clock time and date at job start Tue Mar 31 2020 10:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.46736 * 2 1 4 4 C 1.46896 * 110.99965 * 299.18921 * 3 2 1 5 5 C 1.50699 * 109.47475 * 293.48412 * 4 3 2 6 6 H 1.08002 * 119.99589 * 354.97318 * 5 4 3 7 7 C 1.37875 * 120.00322 * 174.96267 * 5 4 3 8 8 N 1.31514 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00066 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47332 * 90.00169 * 9 7 5 11 11 H 1.48504 * 109.47149 * 210.00010 * 9 7 5 12 12 H 1.48499 * 109.47601 * 330.00191 * 9 7 5 13 13 C 1.46901 * 111.00139 * 63.14767 * 3 2 1 14 14 C 1.50697 * 109.47247 * 66.04061 * 13 3 2 15 15 C 1.35702 * 120.91624 * 259.97974 * 14 13 3 16 16 C 1.41186 * 119.80137 * 180.02562 * 15 14 13 17 17 O 1.21774 * 119.16157 * 179.97438 * 16 15 14 18 18 O 1.34198 * 121.67844 * 0.02743 * 16 15 14 19 19 C 1.35001 * 121.47461 * 359.94932 * 18 16 15 20 20 C 1.38914 * 120.79403 * 180.25953 * 19 18 16 21 21 C 1.50700 * 120.08994 * 0.05697 * 20 19 18 22 22 C 1.37911 * 119.82110 * 180.29347 * 20 19 18 23 23 C 1.50698 * 119.66341 * 179.76601 * 22 20 19 24 24 C 1.38761 * 120.67429 * 359.49076 * 22 20 19 25 25 C 1.36658 * 120.49158 * 0.25090 * 24 22 20 26 26 C 1.39836 * 119.72006 * 0.02562 * 25 24 22 27 27 H 1.08998 * 109.47343 * 60.51776 * 1 2 3 28 28 H 1.09009 * 109.46887 * 180.51478 * 1 2 3 29 29 H 1.09001 * 109.47595 * 300.51566 * 1 2 3 30 30 H 1.09004 * 109.47150 * 240.00126 * 2 1 3 31 31 H 1.09000 * 109.47581 * 119.99989 * 2 1 3 32 32 H 1.08997 * 109.47514 * 53.48928 * 4 3 2 33 33 H 1.09000 * 109.47074 * 173.49002 * 4 3 2 34 34 H 0.96998 * 119.99670 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.46517 * 306.04395 * 13 3 2 36 36 H 1.08993 * 109.47067 * 186.04437 * 13 3 2 37 37 H 1.08006 * 120.10412 * 0.02562 * 15 14 13 38 38 H 1.08997 * 109.47250 * 270.23449 * 21 20 19 39 39 H 1.09004 * 109.47133 * 30.23527 * 21 20 19 40 40 H 1.09007 * 109.47198 * 150.23151 * 21 20 19 41 41 H 1.09000 * 109.47734 * 269.72291 * 23 22 20 42 42 H 1.09007 * 109.47014 * 149.72524 * 23 22 20 43 43 H 1.08996 * 109.47071 * 29.72849 * 23 22 20 44 44 H 1.07999 * 119.75241 * 180.27912 * 24 22 20 45 45 H 1.07998 * 120.14314 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.5644 2.1043 -1.1972 5 6 2.2119 1.5058 -2.4194 6 1 2.9543 0.7288 -2.3114 7 6 1.8563 1.9498 -3.6753 8 7 0.9525 2.8960 -3.8068 9 14 2.6584 1.2073 -5.1902 10 1 1.8634 0.0402 -5.6495 11 1 2.7131 2.2250 -6.2703 12 1 4.0363 0.7666 -4.8551 13 6 1.6110 2.0879 1.2235 14 6 2.2958 1.4655 2.4129 15 6 1.6428 0.5827 3.2103 16 6 2.3070 0.0141 4.3189 17 8 1.7099 -0.7764 5.0269 18 8 3.5794 0.3235 4.6128 19 6 4.2851 1.1938 3.8598 20 6 5.6032 1.4998 4.1739 21 6 6.2644 0.8578 5.3663 22 6 6.3036 2.3964 3.3945 23 6 7.7317 2.7298 3.7415 24 6 5.7086 2.9904 2.2906 25 6 4.4148 2.7000 1.9601 26 6 3.6856 1.7978 2.7409 27 1 -0.3634 0.5058 -0.8946 28 1 -0.3633 -1.0277 0.0092 29 1 -0.3634 0.5218 0.8853 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.4810 2.0199 -1.2819 33 1 1.8418 3.1553 -1.1171 34 1 0.7026 3.2087 -4.6903 35 1 0.5305 2.0091 1.3441 36 1 1.8928 3.1382 1.1505 37 1 0.6181 0.3157 2.9976 38 1 6.0989 1.4748 6.2495 39 1 5.8377 -0.1319 5.5292 40 1 7.3350 0.7661 5.1825 41 1 7.7514 3.5850 4.4171 42 1 8.2795 2.9733 2.8311 43 1 8.1972 1.8723 4.2273 44 1 6.2723 3.6871 1.6879 45 1 3.9574 3.1653 1.0994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746463176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:39 Heat of formation + Delta-G solvation = -48.137087 kcal Electronic energy + Delta-G solvation = -26621.533331 eV Core-core repulsion = 22989.837708 eV Total energy + Delta-G solvation = -3631.695622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.03789 -40.29586 -39.44320 -38.42590 -36.31273 -34.62929 -33.48640 -32.37428 -31.29760 -29.77758 -28.49753 -27.71014 -26.76496 -25.12536 -24.93945 -23.48928 -22.29009 -20.93448 -19.82969 -18.98731 -18.44568 -18.27602 -17.92901 -16.92457 -16.72309 -16.34539 -15.92581 -15.73912 -15.69828 -15.26481 -15.13414 -14.63574 -14.48186 -14.13100 -13.99871 -13.77629 -13.55809 -13.50673 -13.39744 -13.16503 -13.04339 -12.92507 -12.74340 -12.62047 -12.53628 -12.43778 -12.31003 -12.06508 -11.95778 -11.58912 -11.43039 -11.19708 -11.06459 -10.57110 -9.56950 -9.32897 -9.00971 -8.17116 -6.24752 -0.83547 0.03468 0.51073 1.32370 1.42382 1.43814 1.54059 1.73451 2.42016 2.64952 3.02488 3.13018 3.17192 3.33624 3.45716 3.83908 3.89119 4.02846 4.11346 4.13485 4.23028 4.33868 4.40877 4.47145 4.53996 4.64219 4.70198 4.75556 4.77407 4.80845 4.88313 4.94342 4.95682 5.01265 5.12951 5.17716 5.22305 5.33933 5.35880 5.40679 5.49307 5.52159 5.68875 5.74896 6.05645 6.07560 6.26499 6.33504 6.56654 6.90527 7.44237 8.93100 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.013671 B = 0.004087 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.673106 B = 6849.816709 C = 8298.619589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 N -0.526 5.526 4 C 0.205 3.795 5 C -0.515 4.515 6 H 0.058 0.942 7 C 0.009 3.991 8 N -0.931 5.931 9 Si 0.957 3.043 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.074 3.926 14 C 0.074 3.926 15 C -0.273 4.273 16 C 0.514 3.486 17 O -0.512 6.512 18 O -0.276 6.276 19 C 0.123 3.877 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.027 4.027 23 C -0.120 4.120 24 C -0.138 4.138 25 C -0.047 4.047 26 C -0.160 4.160 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.067 0.933 32 H -0.013 1.013 33 H 0.010 0.990 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.166 0.834 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.158 0.842 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.757 1.235 15.389 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.070 4.070 3 N -0.250 5.250 4 C 0.079 3.921 5 C -0.553 4.553 6 H 0.076 0.924 7 C -0.189 4.189 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.053 4.053 14 C 0.072 3.928 15 C -0.293 4.293 16 C 0.366 3.634 17 O -0.405 6.405 18 O -0.188 6.188 19 C 0.079 3.921 20 C -0.116 4.116 21 C -0.166 4.166 22 C -0.027 4.027 23 C -0.176 4.176 24 C -0.155 4.155 25 C -0.065 4.065 26 C -0.160 4.160 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.184 0.816 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.175 0.825 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.003 0.876 15.731 19.807 hybrid contribution -1.453 -0.296 -1.286 1.963 sum 10.551 0.580 14.445 17.897 Atomic orbital electron populations 1.22281 0.97966 1.02369 1.01282 1.21991 0.93310 0.90327 1.01344 1.62302 1.59395 1.02413 1.00891 1.19480 0.93380 0.92786 0.86446 1.21371 1.22319 1.20653 0.90993 0.92384 1.25711 0.95713 0.95552 1.01931 1.70053 1.33043 1.29911 1.24144 0.85558 0.79127 0.78005 0.78991 1.20388 1.20943 1.19122 1.21240 0.97712 0.98852 0.87474 1.21602 0.91088 0.88467 0.91621 1.22355 1.04014 1.04561 0.98361 1.19327 0.78301 0.80673 0.85079 1.90916 1.60853 1.35478 1.53220 1.83431 1.27518 1.54751 1.53078 1.19215 0.91973 0.90479 0.90478 1.19461 0.89781 1.01109 1.01267 1.20807 1.01579 1.00082 0.94100 1.20199 0.97734 0.92319 0.92480 1.21068 0.88999 1.03651 1.03848 1.21165 0.94740 1.01695 0.97941 1.21105 0.94633 0.93790 0.96936 1.19064 0.94715 1.04002 0.98253 0.93941 0.91257 0.92125 0.91788 0.91503 0.99548 0.97183 0.92837 0.92169 0.88532 0.81618 0.89808 0.92438 0.88145 0.88718 0.89607 0.89384 0.82481 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.14 9.25 71.98 0.67 -5.47 16 2 C 0.06 2.14 5.64 86.30 0.49 2.63 16 3 N -0.53 -20.33 4.69 -905.39 -4.25 -24.57 16 4 C 0.20 9.79 4.50 85.56 0.38 10.18 16 5 C -0.51 -27.21 8.41 25.60 0.22 -27.00 16 6 H 0.06 3.07 7.33 -2.91 -0.02 3.05 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -53.13 13.29 21.45 0.28 -52.84 16 9 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.07 2.36 4.29 85.56 0.37 2.73 16 14 C 0.07 2.19 4.78 -18.27 -0.09 2.10 16 15 C -0.27 -8.17 8.58 22.41 0.19 -7.98 16 16 C 0.51 17.14 7.89 68.54 0.54 17.68 16 17 O -0.51 -19.71 17.91 19.04 0.34 -19.37 16 18 O -0.28 -8.62 8.94 15.16 0.14 -8.48 16 19 C 0.12 3.39 6.73 23.00 0.15 3.55 16 20 C -0.12 -2.49 5.89 -19.78 -0.12 -2.60 16 21 C -0.11 -1.77 9.39 71.24 0.67 -1.10 16 22 C -0.03 -0.48 5.88 -19.82 -0.12 -0.60 16 23 C -0.12 -1.15 9.59 71.24 0.68 -0.47 16 24 C -0.14 -2.75 9.61 22.02 0.21 -2.54 16 25 C -0.05 -1.20 9.39 22.29 0.21 -0.99 16 26 C -0.16 -4.54 5.87 -20.13 -0.12 -4.66 16 27 H 0.04 1.70 6.31 -2.39 -0.02 1.69 16 28 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.06 1.84 6.09 -2.39 -0.01 1.82 16 30 H 0.06 2.61 6.97 -2.38 -0.02 2.60 16 31 H 0.07 2.27 6.48 -2.39 -0.02 2.25 16 32 H -0.01 -0.68 6.01 -2.39 -0.01 -0.70 16 33 H 0.01 0.51 7.92 -2.39 -0.02 0.49 16 34 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.06 1.84 5.98 -2.38 -0.01 1.83 16 36 H 0.10 2.92 6.96 -2.39 -0.02 2.90 16 37 H 0.17 4.59 7.81 -2.91 -0.02 4.57 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.11 7.59 -2.39 -0.02 1.09 16 40 H 0.10 1.06 5.92 -2.38 -0.01 1.05 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 0.67 8.08 -2.38 -0.02 0.66 16 43 H 0.09 0.66 5.90 -2.39 -0.01 0.64 16 44 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 45 H 0.14 3.77 6.78 -2.91 -0.02 3.75 16 Total: -1.00 -65.18 359.76 4.36 -60.82 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.01 Total: 13.31 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.80 Total: -13.57 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -3.96 Total: -77.41 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: 0.48 Total: -27.85 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -65.18 4.36 -60.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746463176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.681 kcal (2) G-P(sol) polarization free energy of solvation -65.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds