Wall clock time and date at job start Tue Mar 31 2020 12:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39627 * 120.15207 * 215.03974 * 3 2 1 5 5 C 1.37947 * 119.84856 * 179.97438 * 4 3 2 6 6 C 1.38361 * 120.15160 * 359.97002 * 5 4 3 7 7 C 1.50697 * 119.84890 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47508 * 24.99778 * 7 6 5 9 9 O 1.42903 * 109.47081 * 145.00459 * 7 6 5 10 10 C 1.53003 * 109.47043 * 265.00215 * 7 6 5 11 11 N 1.46905 * 109.47197 * 179.53363 * 10 7 6 12 12 C 1.46954 * 111.00116 * 170.27234 * 11 10 7 13 13 C 1.53054 * 109.36720 * 183.18774 * 12 11 10 14 14 N 1.46958 * 109.36299 * 301.60293 * 13 12 11 15 15 C 1.46900 * 110.99501 * 183.18280 * 14 13 12 16 16 C 1.50700 * 109.46642 * 169.99931 * 15 14 13 17 17 H 1.07997 * 120.00472 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00265 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00267 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47140 * 60.00179 * 20 18 16 22 22 H 1.48493 * 109.47092 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46838 * 299.99941 * 20 18 16 24 24 C 1.46958 * 110.87811 * 59.31802 * 14 13 12 25 25 C 1.46957 * 111.00249 * 294.07550 * 11 10 7 26 26 C 1.38366 * 120.30444 * 0.28404 * 6 5 4 27 27 C 1.37952 * 120.14883 * 359.48041 * 26 6 5 28 28 H 1.08001 * 120.07662 * 359.95077 * 4 3 2 29 29 H 1.08005 * 119.92928 * 179.97438 * 5 4 3 30 30 H 0.96697 * 114.00013 * 60.00266 * 9 7 6 31 31 H 1.09002 * 109.47094 * 59.53640 * 10 7 6 32 32 H 1.09001 * 109.47417 * 299.53251 * 10 7 6 33 33 H 1.09007 * 109.48816 * 63.22293 * 12 11 10 34 34 H 1.08997 * 109.49295 * 303.15846 * 12 11 10 35 35 H 1.08994 * 109.48903 * 181.63051 * 13 12 11 36 36 H 1.09000 * 109.48162 * 61.57058 * 13 12 11 37 37 H 1.08999 * 109.47657 * 289.99890 * 15 14 13 38 38 H 1.08994 * 109.46914 * 50.00312 * 15 14 13 39 39 H 0.96997 * 120.00549 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.48912 * 60.64701 * 24 14 13 41 41 H 1.09001 * 109.48657 * 180.68491 * 24 14 13 42 42 H 1.09004 * 109.48486 * 56.83985 * 25 11 10 43 43 H 1.09003 * 109.48624 * 296.77975 * 25 11 10 44 44 H 1.08000 * 119.92324 * 179.72213 * 26 6 5 45 45 H 1.07995 * 120.07685 * 180.25963 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.9895 0.6932 5 6 4.6483 0.9838 0.6894 6 6 5.3374 0.0009 0.0014 7 6 6.8443 0.0009 0.0023 8 1 7.2072 0.5146 0.8925 9 8 7.3207 -1.3464 0.0023 10 6 7.3551 0.7224 -1.2465 11 7 8.8241 0.7322 -1.2400 12 6 9.3533 1.2078 -2.5258 13 6 10.8816 1.1278 -2.5064 14 7 11.3980 1.9391 -1.3951 15 6 12.8669 1.9487 -1.3886 16 6 13.3580 2.9753 -0.4007 17 1 12.6499 3.5615 0.1660 18 6 14.7115 3.1653 -0.2194 19 7 15.5741 2.4511 -0.9091 20 14 15.3204 4.4373 1.0057 21 1 14.8213 4.0967 2.3621 22 1 16.8053 4.4472 1.0122 23 1 14.8186 5.7796 0.6161 24 6 10.8687 1.4633 -0.1093 25 6 9.3405 1.5434 -0.1287 26 6 4.6492 -0.9790 -0.6920 27 6 3.2697 -0.9881 -0.6926 28 1 2.7322 1.7572 1.2308 29 1 5.1918 1.7483 1.2249 30 1 7.0358 -1.8643 -0.7631 31 1 6.9850 1.7476 -1.2507 32 1 6.9992 0.2040 -2.1368 33 1 9.0453 2.2411 -2.6860 34 1 8.9667 0.5837 -3.3314 35 1 11.2776 1.5073 -3.4483 36 1 11.1898 0.0908 -2.3735 37 1 13.2356 0.9637 -1.1025 38 1 13.2330 2.1986 -2.3844 39 1 16.5263 2.5850 -0.7819 40 1 11.1768 0.4301 0.0508 41 1 11.2557 2.0871 0.6964 42 1 8.9444 1.1638 0.8132 43 1 9.0323 2.5804 -0.2617 44 1 5.1933 -1.7407 -1.2307 45 1 2.7338 -1.7559 -1.2307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760943483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:56 Heat of formation + Delta-G solvation = 20.391408 kcal Electronic energy + Delta-G solvation = -25244.102450 eV Core-core repulsion = 21647.671197 eV Total energy + Delta-G solvation = -3596.431253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39781 -38.90699 -37.49045 -36.50171 -34.81406 -32.61731 -32.20598 -31.57592 -30.49347 -29.30267 -27.21764 -25.24961 -23.49478 -23.43965 -23.10668 -21.64445 -21.19022 -19.43883 -19.19914 -17.59599 -16.46007 -16.30580 -15.73518 -15.65918 -15.11121 -15.04605 -14.56472 -14.47209 -14.34034 -14.14669 -14.09235 -13.95826 -13.61720 -13.34596 -13.16654 -13.08630 -12.84922 -12.43223 -12.09852 -11.95240 -11.73961 -11.67269 -11.38248 -11.16402 -10.87064 -10.74115 -10.67513 -10.46220 -10.32597 -10.21751 -9.73076 -9.55837 -9.23775 -9.17783 -8.43358 -8.16043 -7.22658 -6.02212 -4.03811 0.23190 0.81377 2.22375 2.45341 3.33259 3.34884 3.37502 3.39972 3.40294 3.80652 4.17592 4.29846 4.34801 4.42255 4.47630 4.71001 4.75563 4.90848 4.95874 4.99882 5.19565 5.28058 5.33254 5.38564 5.45983 5.53180 5.55310 5.66257 5.74144 5.76110 5.79816 5.88518 6.02023 6.06957 6.18244 6.25953 6.42546 6.59314 6.70179 7.03192 7.13828 7.15338 7.34360 7.37763 7.46641 7.79751 8.09494 8.21091 8.55483 9.03268 9.60294 11.08558 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029188 B = 0.002209 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.080225 B =12672.893322 C =13154.452136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.255 3.745 3 C -0.035 4.035 4 C -0.066 4.066 5 C -0.110 4.110 6 C -0.081 4.081 7 C 0.146 3.854 8 H 0.113 0.887 9 O -0.535 6.535 10 C 0.029 3.971 11 N -0.528 5.528 12 C 0.062 3.938 13 C 0.056 3.944 14 N -0.539 5.539 15 C 0.194 3.806 16 C -0.508 4.508 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.068 3.932 25 C 0.056 3.944 26 C -0.112 4.112 27 C -0.066 4.066 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.370 0.630 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.031 0.969 37 H -0.008 1.008 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.030 0.970 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.134 0.866 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.623 -6.382 -0.209 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.060 4.060 3 C -0.038 4.038 4 C -0.087 4.087 5 C -0.128 4.128 6 C -0.082 4.082 7 C 0.086 3.914 8 H 0.131 0.869 9 O -0.340 6.340 10 C -0.100 4.100 11 N -0.253 5.253 12 C -0.066 4.066 13 C -0.073 4.073 14 N -0.264 5.264 15 C 0.069 3.931 16 C -0.546 4.546 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C -0.061 4.061 25 C -0.072 4.072 26 C -0.130 4.130 27 C -0.086 4.086 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.218 0.782 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.010 0.990 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.152 0.848 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.892 -6.212 0.312 24.688 hybrid contribution 0.565 0.562 0.045 0.799 sum -23.326 -5.650 0.357 24.004 Atomic orbital electron populations 1.81273 1.12104 1.07748 1.08317 1.25742 0.92691 0.93807 0.93761 1.16014 0.84261 0.99495 1.04032 1.21188 0.94217 0.96681 0.96569 1.20994 0.93521 0.98806 0.99503 1.20971 0.97377 0.94626 0.95249 1.20940 0.86410 0.84571 0.99436 0.86950 1.86712 1.76562 1.21955 1.48749 1.22750 0.89699 0.99612 0.97949 1.62100 1.05263 1.53925 1.04041 1.22162 0.96007 0.98095 0.90320 1.22054 0.92772 0.96203 0.96231 1.62294 1.12319 1.50521 1.01295 1.19694 0.79785 0.95920 0.97748 1.21107 0.91283 1.20095 1.22161 0.92009 1.24992 0.96847 0.96391 0.96384 1.69946 1.01968 1.40560 1.41293 0.86563 0.77436 0.81885 0.81524 1.20268 1.21384 1.20227 1.21966 0.91497 0.98673 0.93943 1.22305 0.96747 0.94780 0.93353 1.20856 0.93532 0.99031 0.99613 1.21146 0.94136 0.96652 0.96675 0.84784 0.84545 0.78204 0.93853 0.90520 0.94387 0.91303 0.91070 0.95052 0.99021 0.95267 0.92878 0.95144 0.89620 0.91045 0.94437 0.84823 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.59 18.54 41.84 0.78 -3.81 16 2 C 0.26 2.16 15.33 -22.48 -0.34 1.81 16 3 C -0.03 -0.22 5.73 -106.93 -0.61 -0.84 16 4 C -0.07 -0.38 9.76 -39.17 -0.38 -0.76 16 5 C -0.11 -0.65 9.66 -39.64 -0.38 -1.03 16 6 C -0.08 -0.52 5.01 -104.53 -0.52 -1.05 16 7 C 0.15 1.20 3.09 -27.88 -0.09 1.12 16 8 H 0.11 1.00 6.37 -51.93 -0.33 0.67 16 9 O -0.54 -5.12 13.01 -35.23 -0.46 -5.58 16 10 C 0.03 0.27 4.60 -3.82 -0.02 0.25 16 11 N -0.53 -6.93 4.59 -234.46 -1.08 -8.00 16 12 C 0.06 0.86 5.61 -3.77 -0.02 0.84 16 13 C 0.06 1.00 5.61 -3.76 -0.02 0.98 16 14 N -0.54 -11.43 4.70 -235.92 -1.11 -12.54 16 15 C 0.19 5.01 4.72 -4.98 -0.02 4.99 16 16 C -0.51 -14.09 8.47 -34.44 -0.29 -14.38 16 17 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 20 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.07 1.30 5.43 -3.77 -0.02 1.28 16 25 C 0.06 0.82 5.41 -3.77 -0.02 0.80 16 26 C -0.11 -0.60 9.31 -39.64 -0.37 -0.97 16 27 C -0.07 -0.35 9.76 -39.17 -0.38 -0.74 16 28 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 30 H 0.37 2.26 7.38 45.56 0.34 2.60 16 31 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.08 0.61 8.03 -51.93 -0.42 0.20 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 38 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.75 6.79 -51.93 -0.35 1.40 16 42 H 0.07 0.92 6.32 -51.93 -0.33 0.59 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.13 0.45 6.60 -52.49 -0.35 0.10 16 45 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -32.61 372.01 -10.15 -42.76 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -6.01 Total: -2.78 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.60 Total: -6.24 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.67 Total: -50.15 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.46 Total: -5.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.61 -10.15 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760943483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.153 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds