Wall clock time and date at job start Tue Mar 31 2020 12:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39627 * 120.15207 * 215.03974 * 3 2 1 5 5 C 1.37947 * 119.84856 * 179.97438 * 4 3 2 6 6 C 1.38361 * 120.15160 * 359.97002 * 5 4 3 7 7 C 1.50697 * 119.84890 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47508 * 24.99778 * 7 6 5 9 9 O 1.42903 * 109.47081 * 145.00459 * 7 6 5 10 10 C 1.53003 * 109.47043 * 265.00215 * 7 6 5 11 11 N 1.46905 * 109.47197 * 179.53363 * 10 7 6 12 12 C 1.46954 * 111.00116 * 170.27234 * 11 10 7 13 13 C 1.53054 * 109.36720 * 183.18774 * 12 11 10 14 14 N 1.46958 * 109.36299 * 301.60293 * 13 12 11 15 15 C 1.46900 * 110.99501 * 183.18280 * 14 13 12 16 16 C 1.50700 * 109.46642 * 169.99931 * 15 14 13 17 17 H 1.07997 * 120.00472 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00265 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00267 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47140 * 60.00179 * 20 18 16 22 22 H 1.48493 * 109.47092 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46838 * 299.99941 * 20 18 16 24 24 C 1.46958 * 110.87811 * 59.31802 * 14 13 12 25 25 C 1.46957 * 111.00249 * 294.07550 * 11 10 7 26 26 C 1.38366 * 120.30444 * 0.28404 * 6 5 4 27 27 C 1.37952 * 120.14883 * 359.48041 * 26 6 5 28 28 H 1.08001 * 120.07662 * 359.95077 * 4 3 2 29 29 H 1.08005 * 119.92928 * 179.97438 * 5 4 3 30 30 H 0.96697 * 114.00013 * 60.00266 * 9 7 6 31 31 H 1.09002 * 109.47094 * 59.53640 * 10 7 6 32 32 H 1.09001 * 109.47417 * 299.53251 * 10 7 6 33 33 H 1.09007 * 109.48816 * 63.22293 * 12 11 10 34 34 H 1.08997 * 109.49295 * 303.15846 * 12 11 10 35 35 H 1.08994 * 109.48903 * 181.63051 * 13 12 11 36 36 H 1.09000 * 109.48162 * 61.57058 * 13 12 11 37 37 H 1.08999 * 109.47657 * 289.99890 * 15 14 13 38 38 H 1.08994 * 109.46914 * 50.00312 * 15 14 13 39 39 H 0.96997 * 120.00549 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.48912 * 60.64701 * 24 14 13 41 41 H 1.09001 * 109.48657 * 180.68491 * 24 14 13 42 42 H 1.09004 * 109.48486 * 56.83985 * 25 11 10 43 43 H 1.09003 * 109.48624 * 296.77975 * 25 11 10 44 44 H 1.08000 * 119.92324 * 179.72213 * 26 6 5 45 45 H 1.07995 * 120.07685 * 180.25963 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.9895 0.6932 5 6 4.6483 0.9838 0.6894 6 6 5.3374 0.0009 0.0014 7 6 6.8443 0.0009 0.0023 8 1 7.2072 0.5146 0.8925 9 8 7.3207 -1.3464 0.0023 10 6 7.3551 0.7224 -1.2465 11 7 8.8241 0.7322 -1.2400 12 6 9.3533 1.2078 -2.5258 13 6 10.8816 1.1278 -2.5064 14 7 11.3980 1.9391 -1.3951 15 6 12.8669 1.9487 -1.3886 16 6 13.3580 2.9753 -0.4007 17 1 12.6499 3.5615 0.1660 18 6 14.7115 3.1653 -0.2194 19 7 15.5741 2.4511 -0.9091 20 14 15.3204 4.4373 1.0057 21 1 14.8213 4.0967 2.3621 22 1 16.8053 4.4472 1.0122 23 1 14.8186 5.7796 0.6161 24 6 10.8687 1.4633 -0.1093 25 6 9.3405 1.5434 -0.1287 26 6 4.6492 -0.9790 -0.6920 27 6 3.2697 -0.9881 -0.6926 28 1 2.7322 1.7572 1.2308 29 1 5.1918 1.7483 1.2249 30 1 7.0358 -1.8643 -0.7631 31 1 6.9850 1.7476 -1.2507 32 1 6.9992 0.2040 -2.1368 33 1 9.0453 2.2411 -2.6860 34 1 8.9667 0.5837 -3.3314 35 1 11.2776 1.5073 -3.4483 36 1 11.1898 0.0908 -2.3735 37 1 13.2356 0.9637 -1.1025 38 1 13.2330 2.1986 -2.3844 39 1 16.5263 2.5850 -0.7819 40 1 11.1768 0.4301 0.0508 41 1 11.2557 2.0871 0.6964 42 1 8.9444 1.1638 0.8132 43 1 9.0323 2.5804 -0.2617 44 1 5.1933 -1.7407 -1.2307 45 1 2.7338 -1.7559 -1.2307 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760943483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:55 Heat of formation + Delta-G solvation = -3.273809 kcal Electronic energy + Delta-G solvation = -25245.128650 eV Core-core repulsion = 21647.671197 eV Total energy + Delta-G solvation = -3597.457453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.95763 -40.01331 -38.33996 -37.25049 -36.17773 -34.48724 -32.91868 -31.98649 -31.81137 -30.54023 -28.63611 -26.58786 -24.73324 -24.36410 -23.70846 -23.17559 -22.12330 -20.57792 -19.90980 -18.46770 -18.26013 -17.10001 -16.94880 -16.44486 -16.27840 -15.88572 -15.79180 -15.57547 -15.35403 -15.11199 -15.02194 -14.80306 -14.75259 -14.38463 -14.25881 -13.88224 -13.81637 -13.47239 -13.38868 -13.05990 -12.94344 -12.75961 -12.67255 -12.34061 -12.27877 -12.21531 -12.06495 -11.99075 -11.69736 -11.46681 -11.17290 -10.91137 -10.59550 -9.94753 -9.74998 -9.20872 -8.98763 -8.18805 -6.29386 -0.25594 0.42624 1.42567 1.45954 1.53766 1.58573 1.88534 2.41736 2.78980 2.85121 2.97906 3.13243 3.34303 3.61479 3.79717 3.88042 3.97870 4.03684 4.10206 4.22863 4.28820 4.42043 4.44025 4.47356 4.53919 4.56705 4.72165 4.78487 4.79654 4.87701 4.96933 5.03640 5.06855 5.10220 5.11546 5.24095 5.26326 5.31780 5.34710 5.58631 5.65284 5.84970 6.03914 6.11115 6.16181 6.38413 6.41379 6.65946 6.86408 6.97703 7.40321 8.92129 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029188 B = 0.002209 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.080225 B =12672.893322 C =13154.452136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.279 3.721 3 C -0.046 4.046 4 C -0.065 4.065 5 C -0.114 4.114 6 C -0.083 4.083 7 C 0.154 3.846 8 H 0.104 0.896 9 O -0.556 6.556 10 C 0.032 3.968 11 N -0.538 5.538 12 C 0.073 3.927 13 C 0.053 3.947 14 N -0.544 5.544 15 C 0.208 3.792 16 C -0.523 4.523 17 H 0.064 0.936 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.069 3.931 25 C 0.069 3.931 26 C -0.111 4.111 27 C -0.062 4.062 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.385 0.615 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.019 0.981 37 H -0.042 1.042 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.011 0.989 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.156 0.844 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.222 -6.045 0.139 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.035 4.035 3 C -0.050 4.050 4 C -0.086 4.086 5 C -0.132 4.132 6 C -0.085 4.085 7 C 0.094 3.906 8 H 0.122 0.878 9 O -0.363 6.363 10 C -0.096 4.096 11 N -0.263 5.263 12 C -0.055 4.055 13 C -0.076 4.076 14 N -0.269 5.269 15 C 0.081 3.919 16 C -0.562 4.562 17 H 0.082 0.918 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.192 1.192 24 C -0.060 4.060 25 C -0.059 4.059 26 C -0.129 4.129 27 C -0.083 4.083 28 H 0.164 0.836 29 H 0.166 0.834 30 H 0.234 0.766 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.037 0.963 37 H -0.025 1.025 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.057 0.943 44 H 0.173 0.827 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -25.533 -5.886 0.650 26.210 hybrid contribution 1.081 0.383 -0.106 1.151 sum -24.452 -5.504 0.544 25.070 Atomic orbital electron populations 1.81294 1.13582 1.09520 1.10220 1.26020 0.92910 0.92307 0.92260 1.16138 0.83131 1.00539 1.05158 1.21331 0.94275 0.96694 0.96258 1.21154 0.93577 0.99036 0.99478 1.20864 0.96308 0.95344 0.95995 1.20800 0.87404 0.83921 0.98493 0.87807 1.86684 1.77094 1.22619 1.49918 1.22841 0.86688 1.00548 0.99534 1.62057 1.07974 1.53288 1.02942 1.22067 0.92659 0.98970 0.91842 1.22177 0.95961 0.94752 0.94717 1.62235 1.09254 1.51980 1.03414 1.19348 0.83038 0.93699 0.95768 1.21418 0.91793 1.20412 1.22530 0.91802 1.25949 0.97011 0.98529 0.98316 1.70086 1.02319 1.42225 1.42901 0.85412 0.76826 0.79115 0.79118 1.19116 1.20969 1.19249 1.21960 0.94945 0.96812 0.92258 1.22115 0.93029 0.95448 0.95266 1.21082 0.93496 0.99058 0.99248 1.21343 0.94291 0.96501 0.96136 0.83576 0.83396 0.76558 0.93115 0.88457 0.94373 0.88137 0.91297 0.96272 1.02456 0.97880 0.92715 0.97027 0.91603 0.88953 0.94278 0.82695 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.10 18.54 19.00 0.35 -9.75 16 2 C 0.28 4.39 15.33 88.33 1.35 5.75 16 3 C -0.05 -0.50 5.73 -21.36 -0.12 -0.62 16 4 C -0.07 -0.59 9.76 22.54 0.22 -0.37 16 5 C -0.11 -1.03 9.66 22.23 0.21 -0.82 16 6 C -0.08 -0.82 5.01 -19.81 -0.10 -0.92 16 7 C 0.15 2.07 3.09 29.85 0.09 2.16 16 8 H 0.10 1.57 6.37 -2.39 -0.02 1.56 16 9 O -0.56 -9.09 13.01 -148.98 -1.94 -11.03 16 10 C 0.03 0.48 4.60 86.30 0.40 0.87 16 11 N -0.54 -12.81 4.59 -895.70 -4.11 -16.92 16 12 C 0.07 1.86 5.61 86.31 0.48 2.34 16 13 C 0.05 1.87 5.61 86.31 0.48 2.35 16 14 N -0.54 -23.64 4.70 -900.31 -4.23 -27.88 16 15 C 0.21 11.29 4.72 85.56 0.40 11.70 16 16 C -0.52 -29.78 8.47 25.60 0.22 -29.56 16 17 H 0.06 3.53 7.13 -2.91 -0.02 3.51 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 19 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 20 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 C 0.07 2.67 5.43 86.31 0.47 3.14 16 25 C 0.07 1.93 5.41 86.31 0.47 2.40 16 26 C -0.11 -0.81 9.31 22.23 0.21 -0.60 16 27 C -0.06 -0.49 9.76 22.54 0.22 -0.27 16 28 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 29 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.38 3.44 7.38 -74.06 -0.55 2.90 16 31 H 0.05 0.74 8.12 -2.39 -0.02 0.72 16 32 H 0.10 1.11 8.03 -2.39 -0.02 1.09 16 33 H 0.04 0.99 8.14 -2.38 -0.02 0.98 16 34 H 0.10 1.98 8.07 -2.39 -0.02 1.96 16 35 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 38 H 0.00 0.18 8.03 -2.39 -0.02 0.16 16 39 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.07 2.77 6.79 -2.39 -0.02 2.75 16 42 H 0.09 2.20 6.32 -2.38 -0.02 2.18 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.16 0.41 6.60 -2.91 -0.02 0.40 16 45 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -72.88 372.01 -1.69 -74.57 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 0.45 Total: 3.25 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.47 Total: -2.00 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -7.70 Total: -110.91 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -1.94 Total: -11.03 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -72.88 -1.69 -74.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760943483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.294 kcal (2) G-P(sol) polarization free energy of solvation -72.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds