Wall clock time and date at job start Tue Mar 31 2020 12:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46966 * 57.41049 * 3 2 1 5 5 N 1.46905 * 109.47136 * 179.97438 * 4 3 2 6 6 C 1.46959 * 111.00205 * 169.99989 * 5 4 3 7 7 C 1.53045 * 109.36142 * 183.19165 * 6 5 4 8 8 N 1.46953 * 109.36645 * 301.59546 * 7 6 5 9 9 C 1.46903 * 110.99911 * 183.19204 * 8 7 6 10 10 C 1.50696 * 109.47151 * 170.00399 * 9 8 7 11 11 C 1.38302 * 119.93469 * 89.99796 * 10 9 8 12 12 C 1.38094 * 120.07461 * 180.02562 * 11 10 9 13 13 C 1.38878 * 119.92859 * 0.27306 * 12 11 10 14 14 O 1.35748 * 120.07147 * 179.72501 * 13 12 11 15 15 C 1.34830 * 117.00101 * 354.46447 * 14 13 12 16 16 H 1.07999 * 119.99626 * 5.05831 * 15 14 13 17 17 C 1.38650 * 120.00326 * 185.05731 * 15 14 13 18 18 N 1.31558 * 120.00083 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99968 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47371 * 60.00005 * 19 17 15 21 21 H 1.48501 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47391 * 299.99818 * 19 17 15 23 23 C 1.38878 * 119.86109 * 359.47415 * 13 12 11 24 24 C 1.38104 * 119.93072 * 0.53047 * 23 13 12 25 25 C 1.46955 * 110.87911 * 59.32804 * 8 7 6 26 26 C 1.46951 * 111.00160 * 293.80538 * 5 4 3 27 27 H 1.09002 * 109.47431 * 297.41293 * 3 2 1 28 28 H 1.08998 * 109.47012 * 177.40667 * 3 2 1 29 29 H 1.08996 * 109.47163 * 60.00215 * 4 3 2 30 30 H 1.08991 * 109.47283 * 299.99835 * 4 3 2 31 31 H 1.08999 * 109.48322 * 63.22114 * 6 5 4 32 32 H 1.09001 * 109.48280 * 303.16096 * 6 5 4 33 33 H 1.09004 * 109.48419 * 181.62928 * 7 6 5 34 34 H 1.09001 * 109.48984 * 61.56954 * 7 6 5 35 35 H 1.08993 * 109.47415 * 50.00043 * 9 8 7 36 36 H 1.09004 * 109.46775 * 290.00137 * 9 8 7 37 37 H 1.08003 * 119.96310 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.04048 * 180.02562 * 12 11 10 39 39 H 0.97006 * 120.00005 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.03575 * 180.25499 * 23 13 12 41 41 H 1.07996 * 119.96455 * 179.74788 * 24 23 13 42 42 H 1.09006 * 109.49296 * 60.64283 * 25 8 7 43 43 H 1.08999 * 109.49262 * 180.70995 * 25 8 7 44 44 H 1.09001 * 109.48835 * 296.77427 * 26 5 4 45 45 H 1.09004 * 109.49423 * 56.83926 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7761 -1.2154 5 7 4.5874 -0.7749 -1.2158 6 6 5.1145 -1.7031 -2.2258 7 6 6.6423 -1.7320 -2.1401 8 7 7.1679 -0.3758 -2.3501 9 6 8.6369 -0.3747 -2.3504 10 6 9.1381 0.9707 -2.8083 11 6 9.3676 1.9730 -1.8834 12 6 9.8264 3.2071 -2.2998 13 6 10.0520 3.4431 -3.6497 14 8 10.4977 4.6569 -4.0628 15 6 10.5920 5.6247 -3.1288 16 1 10.3973 5.3950 -2.0917 17 6 10.9391 6.9148 -3.4998 18 7 11.1768 7.1945 -4.7632 19 14 11.0705 8.2554 -2.2056 20 1 12.1028 7.8795 -1.2065 21 1 11.4537 9.5347 -2.8552 22 1 9.7600 8.4179 -1.5263 23 6 9.8257 2.4329 -4.5755 24 6 9.3668 1.2009 -4.1527 25 6 6.6408 0.5524 -1.3400 26 6 5.1129 0.5813 -1.4256 27 1 2.9716 -0.4723 0.9123 28 1 2.9708 1.0274 -0.0465 29 1 2.7548 -0.3031 -2.1276 30 1 2.7555 -1.8028 -1.1690 31 1 4.8121 -1.3701 -3.2186 32 1 4.7209 -2.7027 -2.0416 33 1 7.0370 -2.3978 -2.9076 34 1 6.9447 -2.0910 -1.1563 35 1 9.0007 -1.1476 -3.0273 36 1 9.0005 -0.5741 -1.3423 37 1 9.1869 1.7906 -0.8343 38 1 10.0058 3.9893 -1.5770 39 1 11.4200 8.0970 -5.0227 40 1 10.0042 2.6120 -5.6255 41 1 9.1867 0.4163 -4.8726 42 1 6.9431 0.2194 -0.3471 43 1 7.0343 1.5520 -1.5241 44 1 4.8106 0.9402 -2.4094 45 1 4.7182 1.2471 -0.6581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760944007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:20 Heat of formation + Delta-G solvation = 17.863165 kcal Electronic energy + Delta-G solvation = -25213.684531 eV Core-core repulsion = 21617.143645 eV Total energy + Delta-G solvation = -3596.540885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.90446 -40.18699 -38.54224 -37.77230 -36.37318 -34.28794 -32.87918 -31.90352 -31.55305 -30.99864 -28.03388 -27.17646 -25.16108 -24.42179 -23.47666 -23.10604 -21.82142 -20.60863 -19.78994 -18.76707 -18.56160 -17.09471 -16.57631 -16.48227 -16.29267 -16.15826 -15.75387 -15.64164 -15.50448 -15.30213 -15.24439 -14.96231 -14.63725 -14.34941 -14.12804 -14.05336 -13.63296 -13.53440 -13.41776 -13.04129 -12.87277 -12.70136 -12.58197 -12.39846 -12.23664 -12.19008 -12.12411 -12.07271 -11.88966 -11.49610 -11.41034 -11.12434 -10.75338 -9.70681 -9.34628 -9.13237 -8.82111 -8.44265 -6.12202 0.65893 0.73655 1.36489 1.47161 1.52687 1.74599 1.83333 2.19928 2.74235 2.79713 3.08692 3.38804 3.39648 3.57760 3.97300 4.01344 4.04068 4.11968 4.20443 4.26407 4.32647 4.44212 4.52524 4.56077 4.58253 4.65443 4.68144 4.73163 4.85539 4.86420 4.93809 5.01985 5.05449 5.08107 5.14644 5.17155 5.18987 5.23061 5.36630 5.63411 5.76326 5.86132 6.02240 6.04556 6.06390 6.24655 6.29207 6.36132 6.61854 7.00604 7.82935 8.78924 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013994 B = 0.002637 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.362138 B =10616.394344 C =12059.110088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.239 3.761 3 C -0.018 4.018 4 C 0.061 3.939 5 N -0.535 5.535 6 C 0.060 3.940 7 C 0.058 3.942 8 N -0.549 5.549 9 C 0.118 3.882 10 C -0.150 4.150 11 C -0.059 4.059 12 C -0.242 4.242 13 C 0.112 3.888 14 O -0.235 6.235 15 C -0.411 4.411 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.923 5.923 19 Si 1.017 2.983 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.256 1.256 23 C -0.208 4.208 24 C -0.048 4.048 25 C 0.055 3.945 26 C 0.053 3.947 27 H 0.141 0.859 28 H 0.124 0.876 29 H 0.036 0.964 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.046 0.954 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 -19.318 10.572 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.078 4.078 3 C -0.058 4.058 4 C -0.068 4.068 5 N -0.259 5.259 6 C -0.068 4.068 7 C -0.069 4.069 8 N -0.274 5.274 9 C -0.009 4.009 10 C -0.151 4.151 11 C -0.077 4.077 12 C -0.261 4.261 13 C 0.062 3.938 14 O -0.142 6.142 15 C -0.487 4.487 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.561 5.561 19 Si 0.837 3.163 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.227 4.227 24 C -0.067 4.067 25 C -0.073 4.073 26 C -0.075 4.075 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.161 0.839 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.466 -19.093 10.226 24.990 hybrid contribution 0.692 1.216 -0.077 1.401 sum -11.773 -17.877 10.149 23.690 Atomic orbital electron populations 1.81289 1.15193 1.11070 1.10717 1.29669 0.95616 0.91194 0.91293 1.19454 0.78667 1.05170 1.02521 1.21952 0.87267 1.01645 0.95927 1.62162 1.06832 1.07943 1.48994 1.22186 0.94345 0.97294 0.93017 1.22196 0.94452 0.89317 1.00967 1.62147 1.07294 1.08601 1.49377 1.20770 0.86770 0.93217 1.00172 1.19587 1.05830 0.96849 0.92868 1.20913 0.95919 0.91228 0.99689 1.21211 1.10318 0.99876 0.94688 1.19945 0.93061 0.86665 0.94112 1.83943 1.74655 1.17229 1.38361 1.21768 1.49177 0.88047 0.89757 0.88066 1.26586 0.96006 0.99760 0.99827 1.70186 1.45894 1.21816 1.18206 0.84665 0.79813 0.75475 0.76383 1.18116 1.19835 1.18073 1.20454 1.10011 0.94025 0.98229 1.20822 0.95208 0.94589 0.96067 1.22173 0.94647 0.97108 0.93373 1.22268 0.94168 0.90432 1.00591 0.84116 0.85838 0.94520 0.88792 0.94906 0.88246 0.89302 0.93656 0.89057 0.93468 0.84618 0.86506 0.91940 0.87377 0.83928 0.93532 0.91523 0.95318 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.08 18.54 20.01 0.37 -10.71 16 2 C 0.24 3.33 15.43 89.44 1.38 4.71 16 3 C -0.02 -0.11 5.64 28.79 0.16 0.05 16 4 C 0.06 0.51 4.91 86.30 0.42 0.93 16 5 N -0.53 -6.05 4.71 -895.72 -4.22 -10.27 16 6 C 0.06 0.70 5.61 86.31 0.48 1.19 16 7 C 0.06 0.80 5.61 86.31 0.48 1.28 16 8 N -0.55 -10.52 4.70 -900.29 -4.23 -14.75 16 9 C 0.12 2.40 5.11 85.56 0.44 2.84 16 10 C -0.15 -4.34 4.90 -19.84 -0.10 -4.43 16 11 C -0.06 -1.89 7.91 22.25 0.18 -1.72 16 12 C -0.24 -10.17 9.17 22.39 0.21 -9.96 16 13 C 0.11 5.54 6.65 22.58 0.15 5.69 16 14 O -0.24 -14.15 9.76 -22.72 -0.22 -14.37 16 15 C -0.41 -23.83 9.49 67.92 0.64 -23.18 16 16 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 17 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 18 N -0.92 -56.79 13.67 21.61 0.30 -56.49 16 19 Si 1.02 42.52 29.55 68.60 2.03 44.55 16 20 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 C -0.21 -8.78 9.99 22.39 0.22 -8.56 16 24 C -0.05 -1.57 9.69 22.25 0.22 -1.36 16 25 C 0.06 1.03 5.25 86.31 0.45 1.48 16 26 C 0.05 0.79 5.41 86.31 0.47 1.25 16 27 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.12 0.50 6.49 -2.39 -0.02 0.48 16 29 H 0.04 0.38 8.12 -2.39 -0.02 0.36 16 30 H 0.09 0.62 8.03 -2.39 -0.02 0.60 16 31 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.79 8.07 -2.39 -0.02 0.77 16 33 H 0.09 1.04 8.07 -2.38 -0.02 1.02 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 1.61 7.97 -2.39 -0.02 1.59 16 36 H 0.05 0.88 8.06 -2.38 -0.02 0.86 16 37 H 0.14 3.47 7.99 -2.91 -0.02 3.45 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 39 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 40 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 42 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 43 H 0.07 1.57 5.95 -2.39 -0.01 1.56 16 44 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.10 1.07 6.34 -2.38 -0.02 1.06 16 Total: -1.00 -75.47 369.57 1.29 -74.18 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.99 Total: 18.59 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 6.28 Total: -30.72 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -7.78 Total: -92.22 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.22 Total: -14.37 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -75.47 1.29 -74.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760944007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.044 kcal (2) G-P(sol) polarization free energy of solvation -75.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds