Wall clock time and date at job start Tue Mar 31 2020 11:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35933 * 116.99923 * 2 1 4 4 C 1.35069 * 119.99581 * 274.93589 * 3 2 1 5 5 C 1.47171 * 120.00367 * 351.31978 * 4 3 2 6 6 C 1.39841 * 120.16969 * 339.25067 * 5 4 3 7 7 C 1.37897 * 119.82177 * 179.74173 * 6 5 4 8 8 C 1.38393 * 120.17171 * 0.53537 * 7 6 5 9 9 C 1.38398 * 120.34831 * 359.74297 * 8 7 6 10 10 C 1.37885 * 120.17136 * 359.97438 * 9 8 7 11 11 C 1.46950 * 120.00316 * 94.93697 * 3 2 1 12 12 O 1.21659 * 120.00160 * 186.90593 * 11 3 2 13 13 N 1.34779 * 119.99713 * 6.62151 * 11 3 2 14 14 C 1.46505 * 119.99886 * 175.91495 * 13 11 3 15 15 C 1.50697 * 109.47201 * 90.00208 * 14 13 11 16 16 H 1.07997 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99808 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00080 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.46900 * 60.00260 * 19 17 15 21 21 H 1.48496 * 109.47037 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47093 * 300.00267 * 19 17 15 23 23 C 1.46504 * 120.00029 * 355.91917 * 13 11 3 24 24 C 1.52995 * 109.47156 * 85.95465 * 23 13 11 25 25 C 1.52997 * 117.49786 * 243.61855 * 24 23 13 26 26 C 1.52993 * 60.00156 * 252.51290 * 25 24 23 27 27 H 1.09001 * 109.46835 * 185.32580 * 1 2 3 28 28 H 1.08995 * 109.47158 * 305.31859 * 1 2 3 29 29 H 1.08998 * 109.47338 * 65.32085 * 1 2 3 30 30 H 1.08003 * 119.99438 * 171.31978 * 4 3 2 31 31 H 1.07999 * 120.08771 * 0.02562 * 6 5 4 32 32 H 1.08005 * 119.90749 * 180.25115 * 7 6 5 33 33 H 1.08001 * 119.82335 * 179.71495 * 8 7 6 34 34 H 1.08004 * 119.91402 * 180.02562 * 9 8 7 35 35 H 1.08001 * 120.08752 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.46842 * 210.00746 * 14 13 11 37 37 H 1.08996 * 109.46642 * 329.99930 * 14 13 11 38 38 H 0.96999 * 120.00070 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46637 * 205.95516 * 23 13 11 40 40 H 1.09000 * 109.46575 * 325.94799 * 23 13 11 41 41 H 1.08997 * 115.54990 * 29.33115 * 24 23 13 42 42 H 1.09003 * 117.49900 * 0.02562 * 25 24 23 43 43 H 1.08997 * 117.50022 * 145.02167 * 25 24 23 44 44 H 1.09004 * 117.50267 * 252.50814 * 26 25 24 45 45 H 1.09007 * 117.49819 * 107.48934 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 2.2630 1.8585 -1.1654 5 6 2.0083 1.1766 -2.4445 6 6 1.9678 -0.2201 -2.5005 7 6 1.7233 -0.8515 -3.7018 8 6 1.5292 -0.1068 -4.8521 9 6 1.5735 1.2757 -4.8059 10 6 1.8112 1.9219 -3.6113 11 6 2.4773 1.8162 1.2679 12 8 2.9145 2.9514 1.2825 13 7 2.3831 1.1154 2.4153 14 6 2.8952 1.6837 3.6648 15 6 1.8015 2.4644 4.3469 16 1 0.8228 2.5303 3.8951 17 6 2.0501 3.0937 5.5483 18 7 3.2418 3.0130 6.0986 19 14 0.6946 4.0620 6.3934 20 1 -0.4468 3.1598 6.6905 21 1 1.2136 4.6379 7.6600 22 1 0.2396 5.1587 5.5013 23 6 1.7688 -0.2146 2.4130 24 6 2.8240 -1.2631 2.0553 25 6 2.6236 -2.0540 0.7610 26 6 2.4067 -2.7339 2.1143 27 1 -0.3633 -1.0233 0.0954 28 1 -0.3633 0.5941 0.8385 29 1 -0.3634 0.4291 -0.9338 30 1 2.6234 2.8766 -1.1586 31 1 2.1231 -0.8026 -1.6044 32 1 1.6876 -1.9300 -3.7458 33 1 1.3427 -0.6073 -5.7908 34 1 1.4207 1.8499 -5.7078 35 1 1.8451 3.0008 -3.5767 36 1 3.2299 0.8791 4.3195 37 1 3.7325 2.3463 3.4462 38 1 3.4168 3.4559 6.9436 39 1 1.3638 -0.4293 3.4020 40 1 0.9650 -0.2422 1.6774 41 1 3.8465 -1.0181 2.3426 42 1 1.7402 -1.8270 0.1641 43 1 3.5143 -2.3294 0.1964 44 1 3.1548 -3.4567 2.4401 45 1 1.3804 -2.9545 2.4080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764498079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:27 Heat of formation + Delta-G solvation = 27.654820 kcal Electronic energy + Delta-G solvation = -27021.955890 eV Core-core repulsion = 23393.546851 eV Total energy + Delta-G solvation = -3628.409039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42295 -38.92803 -37.71662 -36.96787 -34.47377 -32.97741 -32.45962 -30.98626 -29.59978 -27.91496 -26.92501 -26.01191 -24.10938 -22.72022 -22.41291 -22.08844 -20.74121 -20.11163 -19.15860 -17.38442 -16.70385 -16.43258 -16.31864 -15.79763 -15.17886 -15.09854 -14.91437 -14.64561 -14.21468 -13.83735 -13.77423 -13.41013 -13.32492 -13.14468 -12.84714 -12.74349 -12.19271 -11.91916 -11.74550 -11.31088 -11.23873 -11.17267 -11.15708 -10.99444 -10.85278 -10.57148 -10.22604 -10.17544 -9.97476 -9.93936 -9.59851 -9.54799 -9.01283 -8.69092 -8.41984 -8.09859 -7.59254 -6.02752 -4.07546 0.60983 1.35972 2.00643 3.32266 3.36672 3.37246 3.41714 3.72707 3.86267 4.16455 4.23157 4.46403 4.74074 4.82349 4.87905 5.07708 5.11784 5.16411 5.26246 5.29622 5.32577 5.36192 5.40308 5.48119 5.53451 5.59202 5.82022 5.84277 5.90324 5.95083 6.01344 6.11519 6.15521 6.20847 6.25712 6.38082 6.41887 6.47307 6.66278 6.69488 6.92143 7.02382 7.39886 7.45689 7.60787 7.93537 8.24345 8.43621 8.88787 9.05451 9.57045 11.05279 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.003932 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.725840 B = 7118.646538 C = 8087.520892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.318 6.318 3 C 0.033 3.967 4 C -0.085 4.085 5 C -0.058 4.058 6 C -0.100 4.100 7 C -0.129 4.129 8 C -0.120 4.120 9 C -0.128 4.128 10 C -0.104 4.104 11 C 0.532 3.468 12 O -0.535 6.535 13 N -0.578 5.578 14 C 0.245 3.755 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.122 3.878 24 C -0.155 4.155 25 C -0.168 4.168 26 C -0.186 4.186 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.034 0.966 37 H 0.042 0.958 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 -11.106 -18.625 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.236 6.236 3 C -0.013 4.013 4 C -0.105 4.105 5 C -0.059 4.059 6 C -0.117 4.117 7 C -0.147 4.147 8 C -0.138 4.138 9 C -0.146 4.146 10 C -0.122 4.122 11 C 0.318 3.682 12 O -0.414 6.414 13 N -0.307 5.307 14 C 0.126 3.874 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.001 4.001 24 C -0.175 4.175 25 C -0.205 4.205 26 C -0.223 4.223 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.884 -10.621 -18.376 21.779 hybrid contribution -0.737 0.689 0.588 1.167 sum -5.621 -9.932 -17.789 21.135 Atomic orbital electron populations 1.22937 0.79882 1.03294 1.01306 1.86338 1.19194 1.24845 1.93237 1.21332 1.00042 0.86628 0.93302 1.22625 0.98634 0.99204 0.90078 1.18970 1.00859 0.93403 0.92624 1.22117 0.96753 0.93966 0.98885 1.21154 1.00852 0.99855 0.92794 1.21243 1.00048 0.94158 0.98314 1.21022 1.01277 0.94660 0.97674 1.21379 0.98953 0.99872 0.92044 1.18344 0.80457 0.85700 0.83679 1.90803 1.47227 1.17266 1.86140 1.48123 1.57350 1.16155 1.09098 1.19329 0.95358 0.94080 0.78640 1.21361 0.97584 1.32139 1.05272 0.92589 1.24924 0.95734 0.96291 0.97094 1.69921 1.20733 1.43964 1.18739 0.86566 0.81866 0.80356 0.78672 1.20268 1.21171 1.20192 1.21696 0.94748 0.81049 1.02647 1.22700 1.00839 0.92063 1.01870 1.23180 1.03311 1.03419 0.90578 1.22899 1.01968 0.95447 1.02032 0.88638 0.92618 0.93259 0.83678 0.83094 0.86128 0.86458 0.86203 0.85831 0.94831 0.93999 0.92667 0.90655 0.88334 0.88342 0.87034 0.90091 0.89550 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.74 101.05 0.88 1.09 16 2 O -0.32 -4.10 0.70 -19.53 -0.01 -4.11 16 3 C 0.03 0.53 5.52 -37.18 -0.21 0.32 16 4 C -0.09 -1.26 9.43 -37.08 -0.35 -1.61 16 5 C -0.06 -0.73 5.76 -105.07 -0.60 -1.34 16 6 C -0.10 -1.14 8.46 -39.11 -0.33 -1.47 16 7 C -0.13 -1.25 10.03 -39.65 -0.40 -1.65 16 8 C -0.12 -1.09 10.04 -39.47 -0.40 -1.49 16 9 C -0.13 -1.23 10.03 -39.65 -0.40 -1.62 16 10 C -0.10 -1.15 9.80 -39.11 -0.38 -1.53 16 11 C 0.53 11.41 7.58 -12.73 -0.10 11.31 16 12 O -0.53 -13.65 15.90 5.23 0.08 -13.57 16 13 N -0.58 -12.52 2.46 -176.50 -0.43 -12.96 16 14 C 0.25 6.49 5.11 -5.19 -0.03 6.46 16 15 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 16 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 19 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.12 2.08 5.33 -4.04 -0.02 2.06 16 24 C -0.16 -2.33 5.77 -90.62 -0.52 -2.86 16 25 C -0.17 -2.03 8.61 -26.74 -0.23 -2.26 16 26 C -0.19 -2.23 10.25 -26.74 -0.27 -2.51 16 27 H 0.10 0.75 7.94 -51.93 -0.41 0.34 16 28 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 29 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.15 2.23 7.56 -52.48 -0.40 1.84 16 31 H 0.15 1.73 4.62 -52.49 -0.24 1.48 16 32 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.03 0.90 8.07 -51.93 -0.42 0.49 16 37 H 0.04 1.25 7.48 -51.93 -0.39 0.86 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 40 H 0.10 1.44 2.63 -52.54 -0.14 1.30 16 41 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 42 H 0.11 1.23 4.51 -51.93 -0.23 0.99 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -32.72 365.82 -9.30 -42.02 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.38 Total: 2.90 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -3.77 Total: -10.70 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.30 Total: -38.97 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.07 Total: -17.68 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.72 -9.30 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764498079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.672 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds