Wall clock time and date at job start Tue Mar 31 2020 11:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35933 * 116.99923 * 2 1 4 4 C 1.35069 * 119.99581 * 274.93589 * 3 2 1 5 5 C 1.47171 * 120.00367 * 351.31978 * 4 3 2 6 6 C 1.39841 * 120.16969 * 339.25067 * 5 4 3 7 7 C 1.37897 * 119.82177 * 179.74173 * 6 5 4 8 8 C 1.38393 * 120.17171 * 0.53537 * 7 6 5 9 9 C 1.38398 * 120.34831 * 359.74297 * 8 7 6 10 10 C 1.37885 * 120.17136 * 359.97438 * 9 8 7 11 11 C 1.46950 * 120.00316 * 94.93697 * 3 2 1 12 12 O 1.21659 * 120.00160 * 186.90593 * 11 3 2 13 13 N 1.34779 * 119.99713 * 6.62151 * 11 3 2 14 14 C 1.46505 * 119.99886 * 175.91495 * 13 11 3 15 15 C 1.50697 * 109.47201 * 90.00208 * 14 13 11 16 16 H 1.07997 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99808 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00080 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.46900 * 60.00260 * 19 17 15 21 21 H 1.48496 * 109.47037 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47093 * 300.00267 * 19 17 15 23 23 C 1.46504 * 120.00029 * 355.91917 * 13 11 3 24 24 C 1.52995 * 109.47156 * 85.95465 * 23 13 11 25 25 C 1.52997 * 117.49786 * 243.61855 * 24 23 13 26 26 C 1.52993 * 60.00156 * 252.51290 * 25 24 23 27 27 H 1.09001 * 109.46835 * 185.32580 * 1 2 3 28 28 H 1.08995 * 109.47158 * 305.31859 * 1 2 3 29 29 H 1.08998 * 109.47338 * 65.32085 * 1 2 3 30 30 H 1.08003 * 119.99438 * 171.31978 * 4 3 2 31 31 H 1.07999 * 120.08771 * 0.02562 * 6 5 4 32 32 H 1.08005 * 119.90749 * 180.25115 * 7 6 5 33 33 H 1.08001 * 119.82335 * 179.71495 * 8 7 6 34 34 H 1.08004 * 119.91402 * 180.02562 * 9 8 7 35 35 H 1.08001 * 120.08752 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.46842 * 210.00746 * 14 13 11 37 37 H 1.08996 * 109.46642 * 329.99930 * 14 13 11 38 38 H 0.96999 * 120.00070 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46637 * 205.95516 * 23 13 11 40 40 H 1.09000 * 109.46575 * 325.94799 * 23 13 11 41 41 H 1.08997 * 115.54990 * 29.33115 * 24 23 13 42 42 H 1.09003 * 117.49900 * 0.02562 * 25 24 23 43 43 H 1.08997 * 117.50022 * 145.02167 * 25 24 23 44 44 H 1.09004 * 117.50267 * 252.50814 * 26 25 24 45 45 H 1.09007 * 117.49819 * 107.48934 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 2.2630 1.8585 -1.1654 5 6 2.0083 1.1766 -2.4445 6 6 1.9678 -0.2201 -2.5005 7 6 1.7233 -0.8515 -3.7018 8 6 1.5292 -0.1068 -4.8521 9 6 1.5735 1.2757 -4.8059 10 6 1.8112 1.9219 -3.6113 11 6 2.4773 1.8162 1.2679 12 8 2.9145 2.9514 1.2825 13 7 2.3831 1.1154 2.4153 14 6 2.8952 1.6837 3.6648 15 6 1.8015 2.4644 4.3469 16 1 0.8228 2.5303 3.8951 17 6 2.0501 3.0937 5.5483 18 7 3.2418 3.0130 6.0986 19 14 0.6946 4.0620 6.3934 20 1 -0.4468 3.1598 6.6905 21 1 1.2136 4.6379 7.6600 22 1 0.2396 5.1587 5.5013 23 6 1.7688 -0.2146 2.4130 24 6 2.8240 -1.2631 2.0553 25 6 2.6236 -2.0540 0.7610 26 6 2.4067 -2.7339 2.1143 27 1 -0.3633 -1.0233 0.0954 28 1 -0.3633 0.5941 0.8385 29 1 -0.3634 0.4291 -0.9338 30 1 2.6234 2.8766 -1.1586 31 1 2.1231 -0.8026 -1.6044 32 1 1.6876 -1.9300 -3.7458 33 1 1.3427 -0.6073 -5.7908 34 1 1.4207 1.8499 -5.7078 35 1 1.8451 3.0008 -3.5767 36 1 3.2299 0.8791 4.3195 37 1 3.7325 2.3463 3.4462 38 1 3.4168 3.4559 6.9436 39 1 1.3638 -0.4293 3.4020 40 1 0.9650 -0.2422 1.6774 41 1 3.8465 -1.0181 2.3426 42 1 1.7402 -1.8270 0.1641 43 1 3.5143 -2.3294 0.1964 44 1 3.1548 -3.4567 2.4401 45 1 1.3804 -2.9545 2.4080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764498079.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:26 Heat of formation + Delta-G solvation = 10.092341 kcal Electronic energy + Delta-G solvation = -27022.717456 eV Core-core repulsion = 23393.546851 eV Total energy + Delta-G solvation = -3629.170605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69509 -39.96871 -39.06531 -38.14984 -36.19328 -34.58621 -34.01048 -31.75713 -30.77252 -29.74097 -27.98609 -27.40043 -25.84349 -23.90300 -23.42305 -23.07839 -21.97449 -21.36370 -20.46281 -18.77574 -18.53497 -17.69309 -17.54425 -16.99922 -16.81425 -16.32102 -16.00176 -15.82695 -15.64841 -15.37631 -14.86289 -14.66845 -14.47114 -14.26993 -14.09684 -13.88522 -13.68529 -13.49889 -13.14649 -12.83531 -12.74160 -12.56221 -12.34564 -12.20038 -12.09564 -12.06913 -11.91463 -11.74584 -11.49712 -11.13931 -10.92909 -10.69571 -10.66496 -10.13900 -9.77003 -9.50810 -9.01927 -8.24082 -6.40039 -0.44743 0.59422 0.98682 1.34472 1.39425 1.46863 2.00071 2.21828 2.38985 2.77525 3.04446 3.05247 3.11505 3.58630 3.98681 4.02946 4.12910 4.17607 4.20778 4.28665 4.37116 4.43654 4.49401 4.57172 4.60557 4.67934 4.73626 4.77660 4.84359 4.91425 4.97913 4.99815 5.02154 5.13977 5.17261 5.20713 5.29652 5.41650 5.52427 5.55811 5.62065 5.69795 5.76453 5.79793 6.02294 6.15092 6.26999 6.67463 6.77485 7.22429 7.38204 8.82947 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.003932 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.725840 B = 7118.646538 C = 8087.520892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.305 6.305 3 C 0.017 3.983 4 C -0.057 4.057 5 C -0.085 4.085 6 C -0.101 4.101 7 C -0.130 4.130 8 C -0.110 4.110 9 C -0.132 4.132 10 C -0.111 4.111 11 C 0.521 3.479 12 O -0.593 6.593 13 N -0.584 5.584 14 C 0.262 3.738 15 C -0.543 4.543 16 H 0.053 0.947 17 C 0.008 3.992 18 N -0.929 5.929 19 Si 0.970 3.030 20 H -0.259 1.259 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.123 3.877 24 C -0.189 4.189 25 C -0.145 4.145 26 C -0.165 4.165 27 H 0.134 0.866 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.019 0.981 37 H -0.005 1.005 38 H 0.268 0.732 39 H 0.059 0.941 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.128 0.872 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.727 -13.421 -21.412 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.223 6.223 3 C -0.029 4.029 4 C -0.078 4.078 5 C -0.085 4.085 6 C -0.118 4.118 7 C -0.148 4.148 8 C -0.128 4.128 9 C -0.150 4.150 10 C -0.129 4.129 11 C 0.311 3.689 12 O -0.477 6.477 13 N -0.312 5.312 14 C 0.141 3.859 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.794 3.206 20 H -0.183 1.183 21 H -0.201 1.201 22 H -0.202 1.202 23 C 0.001 3.999 24 C -0.208 4.208 25 C -0.181 4.181 26 C -0.203 4.203 27 H 0.152 0.848 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.037 0.963 37 H 0.013 0.987 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.085 0.915 42 H 0.146 0.854 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.325 -12.996 -21.180 25.906 hybrid contribution 0.049 1.369 1.272 1.870 sum -7.276 -11.626 -19.907 24.175 Atomic orbital electron populations 1.23237 0.78560 1.05471 1.01138 1.86341 1.20414 1.22745 1.92832 1.20428 1.03185 0.88565 0.90675 1.22695 0.95675 0.98326 0.91056 1.18892 1.03784 0.94213 0.91635 1.22158 0.96589 0.93252 0.99817 1.21463 0.99968 1.01285 0.92103 1.21675 0.97710 0.94025 0.99373 1.21348 1.00473 0.95363 0.97790 1.21560 0.98701 1.00361 0.92242 1.19239 0.79349 0.85104 0.85178 1.90745 1.49932 1.19792 1.87225 1.48112 1.57409 1.17946 1.07752 1.18754 0.93831 0.92729 0.80584 1.21618 0.97727 1.32904 1.05908 0.92911 1.25896 0.98380 0.97134 0.97731 1.70053 1.22832 1.44725 1.19215 0.85434 0.78980 0.78743 0.77461 1.18304 1.20148 1.20232 1.21949 0.95971 0.79223 1.02726 1.22450 0.98651 0.93697 1.06032 1.23249 1.04133 1.00816 0.89946 1.23022 1.03114 0.92685 1.01432 0.84821 0.94295 0.92372 0.85293 0.83246 0.83563 0.83504 0.83816 0.85398 0.96284 0.98719 0.92317 0.92293 0.85506 0.91466 0.85439 0.89372 0.88629 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.74 113.37 0.99 1.16 16 2 O -0.31 -7.54 0.70 -92.79 -0.06 -7.60 16 3 C 0.02 0.58 5.52 23.82 0.13 0.71 16 4 C -0.06 -1.73 9.43 23.89 0.23 -1.50 16 5 C -0.09 -2.01 5.76 -20.16 -0.12 -2.13 16 6 C -0.10 -2.01 8.46 22.58 0.19 -1.82 16 7 C -0.13 -1.97 10.03 22.23 0.22 -1.75 16 8 C -0.11 -1.50 10.04 22.34 0.22 -1.28 16 9 C -0.13 -2.04 10.03 22.22 0.22 -1.82 16 10 C -0.11 -2.23 9.80 22.57 0.22 -2.00 16 11 C 0.52 24.04 7.58 86.52 0.66 24.70 16 12 O -0.59 -32.97 15.90 -4.22 -0.07 -33.04 16 13 N -0.58 -27.21 2.46 -830.56 -2.05 -29.25 16 14 C 0.26 15.09 5.11 85.63 0.44 15.53 16 15 C -0.54 -32.65 9.39 25.60 0.24 -32.41 16 16 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 17 C 0.01 0.45 5.46 84.66 0.46 0.91 16 18 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 19 Si 0.97 45.93 29.54 68.60 2.03 47.95 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 23 C 0.12 4.34 5.33 86.38 0.46 4.80 16 24 C -0.19 -5.76 5.77 -10.80 -0.06 -5.82 16 25 C -0.15 -3.17 8.61 30.59 0.26 -2.91 16 26 C -0.17 -3.62 10.25 30.59 0.31 -3.30 16 27 H 0.13 1.55 7.94 -2.39 -0.02 1.53 16 28 H 0.04 0.89 7.45 -2.39 -0.02 0.87 16 29 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 30 H 0.13 4.25 7.56 -2.91 -0.02 4.23 16 31 H 0.15 2.99 4.62 -2.91 -0.01 2.97 16 32 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.14 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 37 H -0.01 -0.35 7.48 -2.39 -0.02 -0.37 16 38 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 40 H 0.13 3.67 2.63 -12.02 -0.03 3.64 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.13 2.35 4.51 -2.39 -0.01 2.34 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -77.51 365.82 6.18 -71.33 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.97 Total: 17.14 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.08 Total: -8.94 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -1.76 Total: -86.84 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.13 Total: -40.64 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -77.51 6.18 -71.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764498079.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.419 kcal (2) G-P(sol) polarization free energy of solvation -77.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds