Wall clock time and date at job start Tue Mar 31 2020 12:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47025 * 270.00022 * 3 2 1 5 5 H 1.48496 * 109.47164 * 30.00397 * 3 2 1 6 6 H 1.48500 * 109.46995 * 150.00108 * 3 2 1 7 7 C 1.37874 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00208 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47331 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47099 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00146 * 179.97438 * 11 10 9 13 13 O 1.21585 * 119.99553 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99841 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99666 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47280 * 179.97438 * 15 14 12 17 17 C 1.38289 * 119.92370 * 89.99872 * 16 15 14 18 18 C 1.38098 * 120.07191 * 180.02562 * 17 16 15 19 19 C 1.38917 * 119.92894 * 359.97438 * 18 17 16 20 20 N 1.39674 * 120.07799 * 179.97438 * 19 18 17 21 21 C 1.48229 * 110.99806 * 306.50429 * 20 19 18 22 22 C 1.51116 * 105.44144 * 144.85127 * 21 20 19 23 23 C 1.31117 * 109.37055 * 343.13644 * 22 21 20 24 24 C 1.48234 * 110.99855 * 60.13674 * 20 19 18 25 25 C 1.38907 * 119.84918 * 0.25358 * 19 18 17 26 26 C 1.38115 * 119.92373 * 359.49370 * 25 19 18 27 27 H 0.97000 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.47030 * 59.99467 * 9 7 2 29 29 H 1.08994 * 109.47121 * 300.00083 * 9 7 2 30 30 H 1.08995 * 109.47099 * 59.99835 * 10 9 7 31 31 H 1.09007 * 109.47172 * 299.99911 * 10 9 7 32 32 H 0.97005 * 120.00341 * 0.02562 * 11 10 9 33 33 H 0.97001 * 120.00364 * 359.97438 * 14 12 11 34 34 H 1.09007 * 109.46925 * 59.99897 * 15 14 12 35 35 H 1.08996 * 109.47487 * 300.00072 * 15 14 12 36 36 H 1.07994 * 119.96429 * 0.04330 * 17 16 15 37 37 H 1.08006 * 120.03585 * 179.97438 * 18 17 16 38 38 H 1.09003 * 110.26804 * 263.86739 * 21 20 19 39 39 H 1.08997 * 110.27078 * 25.83407 * 21 20 19 40 40 H 1.08006 * 125.27161 * 163.06834 * 22 21 20 41 41 H 1.08005 * 125.24809 * 179.97438 * 23 22 21 42 42 H 1.08995 * 110.26491 * 334.07475 * 24 20 19 43 43 H 1.08997 * 110.26388 * 96.03942 * 24 20 19 44 44 H 1.08001 * 120.03935 * 179.72550 * 25 19 18 45 45 H 1.07995 * 119.96352 * 180.25144 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6366 -0.0022 12 6 6.1604 -3.8038 -0.0018 13 8 5.5525 -4.8567 0.0001 14 7 7.5082 -3.8037 -0.0023 15 6 8.2407 -5.0724 -0.0025 16 6 9.7223 -4.7971 -0.0038 17 6 10.4015 -4.6706 1.1942 18 6 11.7592 -4.4178 1.1966 19 6 12.4427 -4.2911 -0.0062 20 7 13.8157 -4.0348 -0.0074 21 6 14.1344 -2.8432 0.8146 22 6 15.4687 -3.1430 1.4575 23 6 15.7091 -4.4297 1.3807 24 6 14.5586 -5.1165 0.6821 25 6 11.7565 -4.4140 -1.2076 26 6 10.3997 -4.6720 -1.2029 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8745 -0.6801 -0.8911 30 1 3.6578 -3.1506 -0.8907 31 1 3.6585 -3.1502 0.8893 32 1 5.9716 -1.7965 -0.0025 33 1 7.9932 -2.9637 -0.0034 34 1 7.9769 -5.6441 -0.8923 35 1 7.9778 -5.6439 0.8877 36 1 9.8697 -4.7699 2.1289 37 1 12.2890 -4.3187 2.1325 38 1 14.2100 -1.9580 0.1830 39 1 13.3714 -2.6968 1.5791 40 1 16.1222 -2.4109 1.9085 41 1 16.5923 -4.9225 1.7598 42 1 13.9158 -5.6112 1.4102 43 1 14.9326 -5.8392 -0.0431 44 1 12.2840 -4.3116 -2.1445 45 1 9.8663 -4.7718 -2.1366 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784336113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:55 Heat of formation + Delta-G solvation = 33.119181 kcal Electronic energy + Delta-G solvation = -24337.770334 eV Core-core repulsion = 20741.890999 eV Total energy + Delta-G solvation = -3595.879335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02222 -39.71935 -38.60932 -35.40120 -34.61861 -33.09888 -32.67169 -31.38384 -30.41732 -29.30135 -28.93787 -25.97420 -24.45858 -23.45918 -22.63869 -20.91798 -20.77700 -20.64657 -19.91645 -18.27705 -17.80745 -16.87715 -16.59167 -16.14804 -15.63350 -15.28848 -15.14304 -14.66150 -14.29215 -14.21037 -13.91780 -13.86595 -13.77898 -13.59094 -13.35115 -13.19568 -12.78452 -12.59196 -12.57055 -12.32703 -11.84381 -11.70991 -11.57395 -11.46219 -11.18619 -10.37364 -10.26860 -10.17293 -9.97501 -9.81191 -9.33717 -9.31612 -9.08594 -8.99019 -8.87702 -8.61460 -8.37034 -6.09703 -4.09593 0.71289 1.00513 1.60580 2.91988 3.26019 3.33562 3.34570 3.34866 3.43053 3.52885 4.12781 4.29360 4.38783 4.41246 4.45857 4.57149 4.63612 4.81552 4.94263 4.97699 5.01391 5.04779 5.11941 5.21887 5.23232 5.39581 5.42887 5.58357 5.69289 5.80646 5.86459 5.89252 6.03095 6.09940 6.24549 6.26799 6.27524 6.37471 6.50966 6.61009 6.83343 6.88576 7.05749 7.26361 7.31173 7.68944 8.30598 8.47322 8.91090 8.95500 9.50454 11.03336 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.001958 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.264436 B =14299.715489 C =15163.461491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.742 5.742 12 C 0.699 3.301 13 O -0.595 6.595 14 N -0.750 5.750 15 C 0.181 3.819 16 C -0.104 4.104 17 C -0.088 4.088 18 C -0.153 4.153 19 C 0.079 3.921 20 N -0.470 5.470 21 C 0.052 3.948 22 C -0.168 4.168 23 C -0.169 4.169 24 C 0.055 3.945 25 C -0.093 4.093 26 C -0.092 4.092 27 H 0.264 0.736 28 H 0.021 0.979 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.395 0.605 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.131 0.869 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.349 -7.771 1.960 35.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.025 3.975 11 N -0.396 5.396 12 C 0.399 3.601 13 O -0.473 6.473 14 N -0.407 5.407 15 C 0.057 3.943 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.173 4.173 19 C -0.016 4.016 20 N -0.191 5.191 21 C -0.074 4.074 22 C -0.186 4.186 23 C -0.187 4.187 24 C -0.071 4.071 25 C -0.112 4.112 26 C -0.111 4.111 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.224 0.776 33 H 0.228 0.772 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 33.710 -8.588 1.379 34.815 hybrid contribution 0.661 1.676 0.890 2.009 sum 34.371 -6.913 2.268 35.133 Atomic orbital electron populations 1.69906 1.06272 1.27013 1.50494 1.25000 0.94768 0.99127 0.94418 0.86746 0.80244 0.83560 0.78476 1.20245 1.21305 1.19123 1.20923 0.88651 0.94912 1.51541 0.90574 1.19799 0.97926 0.91459 0.96785 1.21379 0.74740 0.99824 1.01514 1.45527 1.08923 1.06233 1.78888 1.16028 0.81155 0.84861 0.78052 1.90909 1.67697 1.30572 1.58127 1.45162 1.04883 1.08843 1.81794 1.19954 0.85416 0.85786 1.03152 1.20008 0.95465 1.01567 0.93396 1.20997 0.93757 0.98092 0.97919 1.21596 0.95297 1.02368 0.97993 1.19058 0.89114 1.00234 0.93171 1.63296 1.04892 1.03474 1.47440 1.22243 0.95128 0.94582 0.95439 1.23638 0.97290 0.97314 1.00350 1.23625 0.98971 0.95905 1.00224 1.22209 0.93708 0.94501 0.96697 1.20985 0.93611 0.99171 0.97427 1.21128 0.93929 0.98098 0.97932 0.92575 0.96051 0.96457 0.92141 0.92132 0.77578 0.77210 0.90766 0.90869 0.85571 0.86099 0.89123 0.91600 0.84363 0.84414 0.91760 0.89163 0.85062 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 10 C 0.15 3.08 5.61 -4.04 -0.02 3.06 16 11 N -0.74 -12.49 5.56 -65.23 -0.36 -12.85 16 12 C 0.70 11.81 8.57 -86.92 -0.74 11.07 16 13 O -0.59 -12.57 16.34 5.29 0.09 -12.48 16 14 N -0.75 -9.08 5.55 -66.41 -0.37 -9.45 16 15 C 0.18 1.94 5.79 -5.19 -0.03 1.91 16 16 C -0.10 -0.91 5.25 -104.59 -0.55 -1.46 16 17 C -0.09 -0.73 9.69 -39.61 -0.38 -1.11 16 18 C -0.15 -1.20 7.69 -39.38 -0.30 -1.50 16 19 C 0.08 0.65 4.91 -83.79 -0.41 0.24 16 20 N -0.47 -3.72 5.58 -171.16 -0.96 -4.67 16 21 C 0.05 0.35 6.43 -4.04 -0.03 0.33 16 22 C -0.17 -0.94 10.96 -35.85 -0.39 -1.33 16 23 C -0.17 -0.93 10.95 -35.85 -0.39 -1.32 16 24 C 0.05 0.36 6.47 -4.03 -0.03 0.33 16 25 C -0.09 -0.76 9.97 -39.38 -0.39 -1.15 16 26 C -0.09 -0.75 9.69 -39.61 -0.38 -1.13 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.48 7.20 -51.92 -0.37 0.11 16 29 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.39 5.45 8.49 -40.82 -0.35 5.10 16 33 H 0.39 3.85 8.48 -40.82 -0.35 3.51 16 34 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.83 7.04 -52.48 -0.37 0.46 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.44 6.30 -51.93 -0.33 0.12 16 40 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 41 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.06 0.42 6.75 -51.93 -0.35 0.07 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -33.72 373.64 -11.21 -44.93 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.74 Total: 4.95 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -4.60 Total: -5.85 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.91 Total: -53.62 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.72 -11.21 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784336113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.046 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds