Wall clock time and date at job start Tue Mar 31 2020 12:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47025 * 270.00022 * 3 2 1 5 5 H 1.48496 * 109.47164 * 30.00397 * 3 2 1 6 6 H 1.48500 * 109.46995 * 150.00108 * 3 2 1 7 7 C 1.37874 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00208 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47331 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47099 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00146 * 179.97438 * 11 10 9 13 13 O 1.21585 * 119.99553 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99841 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99666 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47280 * 179.97438 * 15 14 12 17 17 C 1.38289 * 119.92370 * 89.99872 * 16 15 14 18 18 C 1.38098 * 120.07191 * 180.02562 * 17 16 15 19 19 C 1.38917 * 119.92894 * 359.97438 * 18 17 16 20 20 N 1.39674 * 120.07799 * 179.97438 * 19 18 17 21 21 C 1.48229 * 110.99806 * 306.50429 * 20 19 18 22 22 C 1.51116 * 105.44144 * 144.85127 * 21 20 19 23 23 C 1.31117 * 109.37055 * 343.13644 * 22 21 20 24 24 C 1.48234 * 110.99855 * 60.13674 * 20 19 18 25 25 C 1.38907 * 119.84918 * 0.25358 * 19 18 17 26 26 C 1.38115 * 119.92373 * 359.49370 * 25 19 18 27 27 H 0.97000 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.47030 * 59.99467 * 9 7 2 29 29 H 1.08994 * 109.47121 * 300.00083 * 9 7 2 30 30 H 1.08995 * 109.47099 * 59.99835 * 10 9 7 31 31 H 1.09007 * 109.47172 * 299.99911 * 10 9 7 32 32 H 0.97005 * 120.00341 * 0.02562 * 11 10 9 33 33 H 0.97001 * 120.00364 * 359.97438 * 14 12 11 34 34 H 1.09007 * 109.46925 * 59.99897 * 15 14 12 35 35 H 1.08996 * 109.47487 * 300.00072 * 15 14 12 36 36 H 1.07994 * 119.96429 * 0.04330 * 17 16 15 37 37 H 1.08006 * 120.03585 * 179.97438 * 18 17 16 38 38 H 1.09003 * 110.26804 * 263.86739 * 21 20 19 39 39 H 1.08997 * 110.27078 * 25.83407 * 21 20 19 40 40 H 1.08006 * 125.27161 * 163.06834 * 22 21 20 41 41 H 1.08005 * 125.24809 * 179.97438 * 23 22 21 42 42 H 1.08995 * 110.26491 * 334.07475 * 24 20 19 43 43 H 1.08997 * 110.26388 * 96.03942 * 24 20 19 44 44 H 1.08001 * 120.03935 * 179.72550 * 25 19 18 45 45 H 1.07995 * 119.96352 * 180.25144 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6366 -0.0022 12 6 6.1604 -3.8038 -0.0018 13 8 5.5525 -4.8567 0.0001 14 7 7.5082 -3.8037 -0.0023 15 6 8.2407 -5.0724 -0.0025 16 6 9.7223 -4.7971 -0.0038 17 6 10.4015 -4.6706 1.1942 18 6 11.7592 -4.4178 1.1966 19 6 12.4427 -4.2911 -0.0062 20 7 13.8157 -4.0348 -0.0074 21 6 14.1344 -2.8432 0.8146 22 6 15.4687 -3.1430 1.4575 23 6 15.7091 -4.4297 1.3807 24 6 14.5586 -5.1165 0.6821 25 6 11.7565 -4.4140 -1.2076 26 6 10.3997 -4.6720 -1.2029 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8745 -0.6801 -0.8911 30 1 3.6578 -3.1506 -0.8907 31 1 3.6585 -3.1502 0.8893 32 1 5.9716 -1.7965 -0.0025 33 1 7.9932 -2.9637 -0.0034 34 1 7.9769 -5.6441 -0.8923 35 1 7.9778 -5.6439 0.8877 36 1 9.8697 -4.7699 2.1289 37 1 12.2890 -4.3187 2.1325 38 1 14.2100 -1.9580 0.1830 39 1 13.3714 -2.6968 1.5791 40 1 16.1222 -2.4109 1.9085 41 1 16.5923 -4.9225 1.7598 42 1 13.9158 -5.6112 1.4102 43 1 14.9326 -5.8392 -0.0431 44 1 12.2840 -4.3116 -2.1445 45 1 9.8663 -4.7718 -2.1366 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784336113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:55 Heat of formation + Delta-G solvation = 9.537036 kcal Electronic energy + Delta-G solvation = -24338.792933 eV Core-core repulsion = 20741.890999 eV Total energy + Delta-G solvation = -3596.901934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60858 -40.97276 -39.29790 -36.79797 -35.88053 -34.78830 -33.72881 -32.03922 -31.97416 -30.28197 -29.41000 -27.18594 -25.89776 -24.10897 -23.28083 -22.63612 -22.00684 -21.50794 -20.32959 -19.55749 -18.89589 -18.42047 -17.39461 -17.16332 -16.69367 -16.37628 -16.16718 -15.83984 -15.43768 -15.36260 -15.19969 -14.89861 -14.71641 -14.57706 -14.40847 -13.95237 -13.89669 -13.55755 -13.33197 -13.20485 -13.01144 -12.92971 -12.42943 -12.25992 -12.20817 -12.15972 -12.13625 -11.75300 -11.53804 -11.32840 -10.77698 -10.63907 -10.37959 -9.95191 -9.73704 -9.64840 -9.38464 -8.28770 -6.35940 0.05449 0.38654 1.20788 1.39901 1.42567 1.53768 1.79100 2.16610 2.37862 2.67104 2.82377 3.06222 3.45064 3.62549 3.70597 3.83194 3.89351 3.98439 4.23072 4.36134 4.38712 4.45163 4.45744 4.47467 4.51458 4.59539 4.66585 4.72937 4.75644 4.77534 4.96071 5.07425 5.16570 5.22041 5.38988 5.41505 5.43098 5.43298 5.44689 5.46054 5.57928 5.67853 5.76942 5.87270 6.03069 6.24538 6.30353 6.71371 7.13354 7.28410 7.59897 8.87975 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.001958 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.264436 B =14299.715489 C =15163.461491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.012 4.012 10 C 0.164 3.836 11 N -0.732 5.732 12 C 0.698 3.302 13 O -0.640 6.640 14 N -0.727 5.727 15 C 0.183 3.817 16 C -0.107 4.107 17 C -0.089 4.089 18 C -0.153 4.153 19 C 0.077 3.923 20 N -0.483 5.483 21 C 0.048 3.952 22 C -0.172 4.172 23 C -0.171 4.171 24 C 0.050 3.950 25 C -0.101 4.101 26 C -0.090 4.090 27 H 0.268 0.732 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.410 0.590 33 H 0.410 0.590 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.138 0.862 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.833 -6.183 2.251 38.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.050 4.050 10 C 0.040 3.960 11 N -0.387 5.387 12 C 0.398 3.602 13 O -0.522 6.522 14 N -0.384 5.384 15 C 0.060 3.940 16 C -0.108 4.108 17 C -0.108 4.108 18 C -0.173 4.173 19 C -0.018 4.018 20 N -0.204 5.204 21 C -0.078 4.078 22 C -0.190 4.190 23 C -0.189 4.189 24 C -0.075 4.075 25 C -0.119 4.119 26 C -0.109 4.109 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.246 0.754 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.174 0.826 41 H 0.175 0.825 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.156 0.844 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 37.278 -6.989 1.670 37.964 hybrid contribution -0.410 1.069 0.787 1.389 sum 36.868 -5.920 2.457 37.421 Atomic orbital electron populations 1.70079 1.08564 1.28394 1.51997 1.26082 0.95701 1.03859 0.93705 0.85528 0.79650 0.77319 0.79305 1.19010 1.21297 1.15983 1.21258 0.91599 0.93391 1.51505 0.95282 1.19645 0.94350 0.92896 0.98066 1.20879 0.77156 0.98214 0.99795 1.45130 1.07276 1.07332 1.78981 1.16148 0.82390 0.83938 0.77716 1.90885 1.69051 1.32178 1.60110 1.44987 1.03124 1.10332 1.79972 1.19977 0.86493 0.84887 1.02671 1.19789 0.94101 1.02915 0.93966 1.21098 0.93982 0.97711 0.98019 1.21680 0.95144 1.02131 0.98333 1.19217 0.89505 0.99702 0.93369 1.63309 1.04697 1.04247 1.48167 1.22297 0.95951 0.94171 0.95395 1.23806 0.96953 0.97832 1.00399 1.23802 0.99182 0.95914 1.00015 1.22269 0.94102 0.94382 0.96780 1.21109 0.93663 0.99330 0.97817 1.21217 0.94010 0.97580 0.98088 0.92355 0.94485 0.94602 0.94030 0.94042 0.75415 0.75386 0.91278 0.91431 0.84849 0.85161 0.89264 0.91650 0.82581 0.82546 0.91850 0.89114 0.84431 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.43 13.96 21.45 0.30 -59.14 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.96 42.35 27.47 68.60 1.88 44.23 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 7 C -0.54 -30.96 9.66 25.60 0.25 -30.71 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 9 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 10 C 0.16 6.82 5.61 86.38 0.48 7.31 16 11 N -0.73 -23.43 5.56 -478.54 -2.66 -26.09 16 12 C 0.70 22.87 8.57 179.05 1.53 24.40 16 13 O -0.64 -27.22 16.34 -3.98 -0.07 -27.28 16 14 N -0.73 -16.32 5.55 -482.30 -2.68 -18.99 16 15 C 0.18 3.71 5.79 85.63 0.50 4.20 16 16 C -0.11 -1.70 5.25 -19.84 -0.10 -1.80 16 17 C -0.09 -1.30 9.69 22.25 0.22 -1.09 16 18 C -0.15 -2.14 7.69 22.40 0.17 -1.97 16 19 C 0.08 1.15 4.91 38.21 0.19 1.34 16 20 N -0.48 -6.94 5.58 -695.42 -3.88 -10.82 16 21 C 0.05 0.57 6.43 85.43 0.55 1.12 16 22 C -0.17 -1.57 10.96 25.66 0.28 -1.29 16 23 C -0.17 -1.53 10.95 25.66 0.28 -1.25 16 24 C 0.05 0.59 6.47 85.43 0.55 1.14 16 25 C -0.10 -1.49 9.97 22.40 0.22 -1.27 16 26 C -0.09 -1.32 9.69 22.25 0.22 -1.10 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.04 1.55 7.20 -2.38 -0.02 1.54 16 29 H 0.04 1.48 7.57 -2.39 -0.02 1.47 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.41 10.12 8.49 -92.70 -0.79 9.33 16 33 H 0.41 6.88 8.48 -92.71 -0.79 6.09 16 34 H 0.07 1.50 8.08 -2.38 -0.02 1.48 16 35 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 36 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.13 1.55 7.04 -2.91 -0.02 1.52 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 0.77 6.30 -2.39 -0.02 0.76 16 40 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 41 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.06 0.74 6.75 -2.39 -0.02 0.73 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 45 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -74.49 373.64 -1.80 -76.29 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.62 Total: 22.48 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 5.92 Total: -0.69 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -8.92 Total: -115.03 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.07 Total: -27.28 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Total: -74.49 -1.80 -76.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784336113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.831 kcal (2) G-P(sol) polarization free energy of solvation -74.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds