Wall clock time and date at job start Tue Mar 31 2020 11:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34233 * 116.99630 * 2 1 4 4 O 1.20825 * 120.00388 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99740 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47119 * 179.97438 * 5 3 2 7 7 C 1.37100 * 119.99860 * 263.48012 * 6 5 3 8 8 H 1.07997 * 120.00166 * 141.97882 * 7 6 5 9 9 C 1.38955 * 119.99874 * 321.98055 * 7 6 5 10 10 N 1.31417 * 119.99913 * 162.71075 * 9 7 6 11 11 Si 1.86796 * 120.00244 * 342.71192 * 9 7 6 12 12 H 1.48496 * 109.47103 * 93.19675 * 11 9 7 13 13 H 1.48501 * 109.47185 * 213.19804 * 11 9 7 14 14 H 1.48504 * 109.47021 * 333.19679 * 11 9 7 15 15 C 1.34771 * 120.00017 * 83.47964 * 6 5 3 16 16 O 1.21292 * 120.00190 * 4.70581 * 15 6 5 17 17 C 1.50697 * 119.99860 * 184.70551 * 15 6 5 18 18 H 1.09006 * 109.47152 * 15.26699 * 17 15 6 19 19 F 1.39898 * 109.47185 * 255.26696 * 17 15 6 20 20 C 1.53001 * 109.47051 * 135.26627 * 17 15 6 21 21 C 1.52998 * 109.47074 * 184.99835 * 20 17 15 22 22 C 1.53001 * 109.47292 * 184.99821 * 21 20 17 23 23 C 1.52994 * 109.47559 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47312 * 60.00104 * 23 22 21 25 25 C 1.53005 * 109.47050 * 300.00441 * 24 23 22 26 26 C 1.52998 * 109.47156 * 59.99866 * 25 24 23 27 27 H 1.09002 * 109.47118 * 60.00279 * 1 2 3 28 28 H 1.09003 * 109.46757 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47360 * 299.99947 * 1 2 3 30 30 H 1.09006 * 109.47143 * 59.99969 * 5 3 2 31 31 H 1.09002 * 109.47179 * 300.00110 * 5 3 2 32 32 H 0.96997 * 120.00165 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.46943 * 64.99989 * 20 17 15 34 34 H 1.08999 * 109.47259 * 305.00077 * 20 17 15 35 35 H 1.08991 * 109.47669 * 305.00084 * 21 20 17 36 36 H 1.09001 * 109.47110 * 300.00799 * 22 21 20 37 37 H 1.09000 * 109.46875 * 60.00248 * 22 21 20 38 38 H 1.08998 * 109.47464 * 179.97438 * 23 22 21 39 39 H 1.09001 * 109.47367 * 300.00403 * 23 22 21 40 40 H 1.08997 * 109.47428 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.47149 * 59.99763 * 24 23 22 42 42 H 1.09001 * 109.46920 * 299.99266 * 25 24 23 43 43 H 1.09000 * 109.47201 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47197 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.47695 * 59.99876 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.3057 3.2982 -1.1801 8 1 4.0252 4.3280 -1.3449 9 6 4.9952 2.5999 -2.1639 10 7 5.0129 3.0496 -3.3986 11 14 5.8967 1.0221 -1.7314 12 1 5.0055 -0.1402 -1.9761 13 1 7.1128 0.8997 -2.5750 14 1 6.2887 1.0526 -0.2994 15 6 4.0451 3.3644 1.1590 16 8 3.8415 2.7960 2.2110 17 6 4.3690 4.8361 1.1482 18 1 4.2526 5.2264 0.1371 19 9 5.6885 5.0263 1.5725 20 6 3.4182 5.5746 2.0924 21 6 3.6638 7.0811 1.9879 22 6 2.8023 7.8111 3.0203 23 6 3.0474 9.3177 2.9155 24 6 2.6769 9.7981 1.5109 25 6 3.5384 9.0681 0.4784 26 6 3.2932 7.5616 0.5833 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9564 0.7806 -0.8892 31 1 3.9556 0.7810 0.8908 32 1 5.4945 2.5623 -4.0853 33 1 3.5968 5.2475 3.1167 34 1 2.3873 5.3544 1.8153 35 1 4.7160 7.2918 2.1786 36 1 1.7500 7.6004 2.8297 37 1 3.0660 7.4686 4.0210 38 1 2.4333 9.8378 3.6506 39 1 4.0997 9.5288 3.1058 40 1 2.8520 10.8714 1.4360 41 1 1.6246 9.5871 1.3205 42 1 4.5907 9.2792 0.6688 43 1 3.2742 9.4101 -0.5222 44 1 3.9072 7.0415 -0.1519 45 1 2.2409 7.3505 0.3930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793533495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:43 Heat of formation + Delta-G solvation = -181.866399 kcal Electronic energy + Delta-G solvation = -28067.223012 eV Core-core repulsion = 23998.959227 eV Total energy + Delta-G solvation = -4068.263785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.168 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -47.07877 -40.11438 -38.84888 -38.37011 -36.01863 -35.05292 -33.22688 -32.16046 -30.66724 -29.66591 -28.25557 -26.64795 -25.19832 -23.76674 -22.44990 -21.18276 -20.51764 -19.55679 -19.28449 -17.69487 -17.40725 -17.04938 -16.01449 -15.87560 -15.49052 -15.32760 -15.15957 -14.75242 -14.42552 -14.03476 -13.99892 -13.63204 -13.53584 -13.31344 -13.04350 -12.75768 -12.50644 -12.39933 -12.09708 -12.01015 -11.94282 -11.73565 -11.60838 -11.25151 -11.14300 -11.00188 -10.77009 -10.73409 -10.47118 -10.42039 -10.28160 -10.14599 -9.98342 -9.90648 -9.63083 -9.41720 -8.76235 -8.11713 -6.63474 -4.31469 2.74537 2.83869 2.90661 3.12543 3.15948 3.49640 3.91750 3.99020 4.74479 4.78001 4.79696 4.85961 5.14708 5.24231 5.28578 5.33715 5.37477 5.38864 5.46701 5.51548 5.57808 5.62385 5.64375 5.67287 5.71481 5.72500 5.77261 5.80603 5.84762 6.08053 6.10632 6.23013 6.25686 6.26036 6.37057 6.44057 6.46180 6.63591 6.71527 6.74872 7.00863 7.81261 7.97656 8.27387 8.67399 9.02091 9.30769 10.45975 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.004599 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.667208 B = 6087.239859 C = 6991.454293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.451 3.549 4 O -0.491 6.491 5 C 0.103 3.897 6 N -0.441 5.441 7 C -0.353 4.353 8 H 0.112 0.888 9 C 0.069 3.931 10 N -0.851 5.851 11 Si 0.866 3.134 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.254 1.254 15 C 0.476 3.524 16 O -0.575 6.575 17 C 0.093 3.907 18 H 0.115 0.885 19 F -0.200 7.200 20 C -0.129 4.129 21 C -0.086 4.086 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.122 4.122 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.279 0.721 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.663 4.465 6.173 8.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.292 3.708 4 O -0.376 6.376 5 C -0.021 4.021 6 N -0.162 5.162 7 C -0.479 4.479 8 H 0.129 0.871 9 C -0.140 4.140 10 N -0.485 5.485 11 Si 0.692 3.308 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.178 1.178 15 C 0.264 3.736 16 O -0.458 6.458 17 C 0.054 3.946 18 H 0.133 0.867 19 F -0.181 7.181 20 C -0.167 4.167 21 C -0.104 4.104 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.159 4.159 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.899 4.483 6.480 9.278 hybrid contribution 0.252 -0.861 -0.213 0.922 sum -4.646 3.622 6.267 8.601 Atomic orbital electron populations 1.23156 0.77368 1.02945 1.02301 1.86521 1.22795 1.34315 1.84835 1.24646 0.92702 0.81281 0.72193 1.90604 1.66594 1.36258 1.44112 1.21453 0.87086 0.88349 1.05255 1.43443 1.57209 1.08240 1.07297 1.19117 1.37241 1.00080 0.91481 0.87056 1.25342 0.95536 0.98443 0.94669 1.69694 1.38477 1.40087 1.00208 0.87115 0.80402 0.82725 0.80560 1.19455 1.20465 1.17805 1.20750 0.79960 0.89611 0.83278 1.90568 1.53551 1.70515 1.31126 1.21558 0.78281 0.93434 1.01320 0.86735 1.92785 1.37401 1.95900 1.91974 1.22054 0.99734 0.94362 1.00521 1.21142 1.00421 0.93537 0.95315 1.21555 1.00018 0.94657 0.98754 1.21521 1.01313 0.95964 0.96739 1.21545 0.99974 0.99097 0.95058 1.21517 0.99914 0.95490 0.98628 1.21701 1.02015 0.95441 0.96735 0.92123 0.88636 0.92277 0.87166 0.86986 0.91039 0.90261 0.90177 0.90615 0.92001 0.92067 0.92434 0.92088 0.92515 0.92150 0.92053 0.92105 0.91126 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.70 10.57 -39.27 -0.41 -7.11 16 3 C 0.45 9.74 7.98 36.00 0.29 10.03 16 4 O -0.49 -11.66 16.02 -18.75 -0.30 -11.96 16 5 C 0.10 2.29 4.48 -5.19 -0.02 2.27 16 6 N -0.44 -10.66 1.76 -116.09 -0.20 -10.86 16 7 C -0.35 -8.99 9.10 -14.93 -0.14 -9.13 16 8 H 0.11 2.93 6.41 -52.49 -0.34 2.60 16 9 C 0.07 1.75 5.35 -17.46 -0.09 1.66 16 10 N -0.85 -22.58 13.96 55.50 0.77 -21.80 16 11 Si 0.87 19.17 24.79 -169.99 -4.21 14.96 16 12 H -0.27 -5.55 6.64 56.52 0.38 -5.18 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.25 -5.68 7.10 56.52 0.40 -5.28 16 15 C 0.48 11.31 6.73 -10.99 -0.07 11.23 16 16 O -0.58 -14.45 16.26 5.55 0.09 -14.36 16 17 C 0.09 1.91 3.23 -27.88 -0.09 1.82 16 18 H 0.12 2.35 3.99 -51.93 -0.21 2.15 16 19 F -0.20 -4.23 16.66 2.25 0.04 -4.19 16 20 C -0.13 -2.22 4.16 -26.73 -0.11 -2.34 16 21 C -0.09 -1.22 2.15 -90.62 -0.20 -1.42 16 22 C -0.11 -1.36 5.20 -26.73 -0.14 -1.50 16 23 C -0.12 -1.25 5.92 -26.73 -0.16 -1.40 16 24 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 25 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 26 C -0.12 -1.70 4.96 -26.73 -0.13 -1.84 16 27 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 30 H 0.11 2.40 3.24 -51.93 -0.17 2.23 16 31 H 0.11 2.32 7.56 -51.93 -0.39 1.92 16 32 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.08 1.12 7.81 -51.93 -0.41 0.71 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.09 6.46 -51.93 -0.34 0.76 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -29.72 360.20 -5.84 -35.56 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.92 Total: 6.38 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -0.12 Total: 7.98 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.57 Total: -32.67 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.63 Total: -33.44 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.19 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.21 Total: 14.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.72 -5.84 -35.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793533495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.309 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds