Wall clock time and date at job start Tue Mar 31 2020 11:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99818 * 2 1 4 4 O 1.20829 * 119.99791 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00047 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47336 * 179.97438 * 5 3 2 7 7 C 1.37099 * 120.00408 * 262.97809 * 6 5 3 8 8 H 1.08001 * 119.99814 * 203.52154 * 7 6 5 9 9 C 1.38951 * 119.99888 * 23.52360 * 7 6 5 10 10 N 1.31410 * 119.99675 * 6.95610 * 9 7 6 11 11 Si 1.86799 * 119.99856 * 186.95606 * 9 7 6 12 12 H 1.48496 * 109.47183 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46967 * 120.00000 * 11 9 7 14 14 H 1.48493 * 109.46950 * 239.99970 * 11 9 7 15 15 C 1.34776 * 119.99659 * 82.97325 * 6 5 3 16 16 O 1.21294 * 120.00363 * 5.24655 * 15 6 5 17 17 C 1.50706 * 120.00145 * 185.23775 * 15 6 5 18 18 H 1.08997 * 109.46929 * 346.09170 * 17 15 6 19 19 F 1.39901 * 109.46875 * 106.08810 * 17 15 6 20 20 C 1.52988 * 109.47444 * 226.08684 * 17 15 6 21 21 C 1.53004 * 109.47441 * 175.00033 * 20 17 15 22 22 C 1.52998 * 109.47227 * 175.00174 * 21 20 17 23 23 C 1.53007 * 109.46739 * 180.02562 * 22 21 20 24 24 C 1.52995 * 109.47191 * 299.99726 * 23 22 21 25 25 C 1.53004 * 109.46952 * 60.00163 * 24 23 22 26 26 C 1.52994 * 109.47249 * 299.99815 * 25 24 23 27 27 H 1.08997 * 109.47696 * 300.00060 * 1 2 3 28 28 H 1.09008 * 109.47168 * 60.00362 * 1 2 3 29 29 H 1.09002 * 109.46707 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47381 * 60.00236 * 5 3 2 31 31 H 1.09001 * 109.47483 * 300.00188 * 5 3 2 32 32 H 0.97006 * 119.99355 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.47114 * 55.00140 * 20 17 15 34 34 H 1.09003 * 109.47498 * 295.00276 * 20 17 15 35 35 H 1.09003 * 109.46748 * 55.00168 * 21 20 17 36 36 H 1.08994 * 109.47196 * 60.00135 * 22 21 20 37 37 H 1.09006 * 109.46971 * 299.99764 * 22 21 20 38 38 H 1.09000 * 109.47035 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.47138 * 60.00053 * 23 22 21 40 40 H 1.08991 * 109.47339 * 180.02562 * 24 23 22 41 41 H 1.09006 * 109.47254 * 300.00722 * 24 23 22 42 42 H 1.08994 * 109.46999 * 60.00038 * 25 24 23 43 43 H 1.09006 * 109.46868 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.47924 * 300.00390 * 26 25 24 45 45 H 1.09000 * 109.47245 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9816 2.6799 -0.0002 7 6 4.3157 3.2954 -1.1788 8 1 4.9626 4.1602 -1.1719 9 6 3.8218 2.8067 -2.3821 10 7 2.9287 1.8427 -2.3827 11 14 4.4276 3.5199 -3.9988 12 1 5.4252 4.5857 -3.7268 13 1 5.0589 2.4464 -4.8078 14 1 3.2807 4.0940 -4.7471 15 6 4.0352 3.3673 1.1579 16 8 3.8323 2.7994 2.2103 17 6 4.3474 4.8416 1.1453 18 1 4.7372 5.1221 0.1668 19 9 3.1808 5.5675 1.4082 20 6 5.3930 5.1507 2.2185 21 6 5.8019 6.6220 2.1236 22 6 6.7525 6.9624 3.2731 23 6 7.1608 8.4339 3.1784 24 6 7.8653 8.6829 1.8433 25 6 6.9146 8.3424 0.6938 26 6 6.5064 6.8710 0.7884 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9564 0.7807 -0.8892 31 1 3.9557 0.7811 0.8908 32 1 2.5843 1.5013 -3.2228 33 1 6.2686 4.5197 2.0652 34 1 4.9714 4.9536 3.2042 35 1 4.9138 7.2507 2.1882 36 1 7.6405 6.3337 3.2085 37 1 6.2504 6.7855 4.2243 38 1 7.8377 8.6766 3.9976 39 1 6.2725 9.0624 3.2433 40 1 8.1565 9.7310 1.7761 41 1 8.7535 8.0544 1.7784 42 1 6.0264 8.9708 0.7587 43 1 7.4167 8.5193 -0.2574 44 1 7.3945 6.2425 0.7236 45 1 5.8295 6.6283 -0.0308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793533499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:47 Heat of formation + Delta-G solvation = -203.675038 kcal Electronic energy + Delta-G solvation = -28106.897387 eV Core-core repulsion = 24037.687908 eV Total energy + Delta-G solvation = -4069.209479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.168 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -48.75671 -41.39558 -40.22609 -39.48331 -37.38969 -36.64156 -34.43390 -33.57638 -31.63008 -30.99467 -29.47606 -27.92319 -26.81298 -25.10246 -23.43185 -22.35033 -21.64490 -21.21261 -20.58300 -19.26365 -18.77111 -18.44256 -17.42292 -17.15697 -16.96983 -16.55527 -16.39081 -16.08760 -15.98680 -15.19708 -15.09035 -14.99815 -14.82881 -14.70507 -14.31974 -14.02339 -13.87371 -13.46971 -13.28646 -13.13734 -13.07393 -12.95191 -12.86401 -12.71293 -12.60163 -12.46304 -12.05690 -11.94142 -11.81780 -11.75949 -11.62258 -11.56097 -11.28690 -11.02719 -10.92199 -10.74862 -10.44085 -9.96030 -8.43515 -6.12047 1.30581 1.46698 1.56738 1.61173 1.71874 2.10675 2.28315 2.62973 3.03044 3.57848 3.68618 3.81701 3.88108 4.00339 4.11253 4.14208 4.23268 4.31763 4.37762 4.41341 4.45514 4.53931 4.55336 4.62262 4.66714 4.68758 4.70557 4.76719 4.84503 4.96440 5.05400 5.12223 5.22702 5.31515 5.32567 5.35911 5.37371 5.44669 5.52749 5.54834 5.65002 5.65798 6.20094 6.95362 7.13331 7.29060 7.67635 8.62432 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.004424 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.381333 B = 6327.582774 C = 7670.953192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.374 6.374 3 C 0.488 3.512 4 O -0.543 6.543 5 C 0.151 3.849 6 N -0.428 5.428 7 C -0.358 4.358 8 H 0.121 0.879 9 C 0.000 4.000 10 N -0.900 5.900 11 Si 0.999 3.001 12 H -0.248 1.248 13 H -0.270 1.270 14 H -0.290 1.290 15 C 0.432 3.568 16 O -0.618 6.618 17 C 0.092 3.908 18 H 0.117 0.883 19 F -0.214 7.214 20 C -0.118 4.118 21 C -0.081 4.081 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.122 4.122 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.275 0.725 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.349 6.339 2.713 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.290 6.290 3 C 0.331 3.669 4 O -0.432 6.432 5 C 0.026 3.974 6 N -0.145 5.145 7 C -0.485 4.485 8 H 0.138 0.862 9 C -0.202 4.202 10 N -0.539 5.539 11 Si 0.822 3.178 12 H -0.171 1.171 13 H -0.195 1.195 14 H -0.216 1.216 15 C 0.220 3.780 16 O -0.505 6.505 17 C 0.053 3.947 18 H 0.134 0.866 19 F -0.195 7.195 20 C -0.156 4.156 21 C -0.099 4.099 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.159 4.159 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.892 6.238 3.073 10.518 hybrid contribution -0.937 -0.028 -0.910 1.307 sum 6.954 6.210 2.163 9.571 Atomic orbital electron populations 1.23312 0.76143 1.04982 1.01156 1.86419 1.24120 1.33531 1.84960 1.24038 0.92663 0.80797 0.69392 1.90506 1.67460 1.37813 1.47385 1.20611 0.87059 0.85551 1.04223 1.43636 1.55617 1.08556 1.06710 1.20173 1.29833 1.15694 0.82761 0.86201 1.26253 0.94267 0.96442 1.03240 1.69790 1.27528 1.27715 1.28830 0.84763 0.78004 0.78737 0.76273 1.17124 1.19546 1.21622 1.21267 0.82464 0.90383 0.83850 1.90505 1.56569 1.71303 1.32128 1.21701 0.82871 0.86715 1.03408 0.86599 1.92756 1.52570 1.78256 1.95886 1.22016 0.97289 0.98818 0.97503 1.21112 0.98755 0.93280 0.96790 1.21541 0.98791 0.97456 0.96944 1.21525 1.00494 0.95381 0.97995 1.21532 0.98158 1.01694 0.93968 1.21519 0.99600 0.95171 0.99192 1.21699 1.00287 0.97890 0.96050 0.93246 0.93591 0.84544 0.84916 0.89318 0.91502 0.89449 0.91579 0.91909 0.91258 0.92174 0.90731 0.92369 0.91009 0.91590 0.92457 0.91213 0.91058 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.50 16 2 O -0.37 -16.33 10.57 -51.46 -0.54 -16.87 16 3 C 0.49 25.06 6.07 71.23 0.43 25.50 16 4 O -0.54 -31.75 15.75 21.95 0.35 -31.41 16 5 C 0.15 7.41 5.16 85.63 0.44 7.85 16 6 N -0.43 -21.81 2.19 -639.59 -1.40 -23.21 16 7 C -0.36 -17.48 8.97 84.04 0.75 -16.73 16 8 H 0.12 5.30 5.89 -2.91 -0.02 5.28 16 9 C 0.00 0.00 5.17 84.93 0.44 0.44 16 10 N -0.90 -46.00 8.83 21.66 0.19 -45.81 16 11 Si 1.00 37.83 29.56 68.60 2.03 39.85 16 12 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 13 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 14 H -0.29 -11.44 7.11 99.48 0.71 -10.73 16 15 C 0.43 21.88 6.68 87.66 0.59 22.46 16 16 O -0.62 -34.06 16.30 -3.07 -0.05 -34.11 16 17 C 0.09 3.88 3.31 29.85 0.10 3.98 16 18 H 0.12 4.63 3.74 -2.39 -0.01 4.62 16 19 F -0.21 -10.01 16.66 44.97 0.75 -9.26 16 20 C -0.12 -4.00 4.17 30.59 0.13 -3.87 16 21 C -0.08 -2.18 2.15 -10.79 -0.02 -2.20 16 22 C -0.11 -2.38 5.20 30.60 0.16 -2.22 16 23 C -0.12 -2.08 5.92 30.59 0.18 -1.90 16 24 C -0.12 -1.95 5.92 30.59 0.18 -1.77 16 25 C -0.12 -2.35 5.92 30.59 0.18 -2.17 16 26 C -0.12 -2.99 4.97 30.59 0.15 -2.84 16 27 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 28 H 0.05 1.67 8.13 -2.38 -0.02 1.65 16 29 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.13 6.40 6.34 -2.38 -0.02 6.39 16 31 H 0.09 4.10 7.57 -2.39 -0.02 4.08 16 32 H 0.27 13.39 8.31 -92.70 -0.77 12.62 16 33 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.07 2.41 8.06 -2.39 -0.02 2.39 16 35 H 0.06 1.84 7.82 -2.39 -0.02 1.83 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.43 6.46 -2.39 -0.02 1.42 16 Total: -1.00 -67.86 361.38 7.21 -60.65 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.99 Total: 31.14 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 4.91 Total: 29.03 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.21 Total: -69.02 kcal Atomic # 8 Polarization: -82.14 SS G_CDS: -0.25 Total: -82.39 kcal Atomic # 9 Polarization: -10.01 SS G_CDS: 0.75 Total: -9.26 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.85 kcal Total: -67.86 7.21 -60.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793533499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.029 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds