Wall clock time and date at job start Tue Mar 31 2020 12:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39731 * 120.20335 * 160.65980 * 3 2 1 5 5 C 1.37802 * 119.91382 * 179.97438 * 4 3 2 6 6 C 1.38566 * 120.34720 * 0.02562 * 5 4 3 7 7 C 1.38008 * 120.42470 * 0.02562 * 6 5 4 8 8 C 1.38885 * 120.06912 * 359.97438 * 7 6 5 9 9 N 1.39036 * 120.17209 * 180.02562 * 8 7 6 10 10 C 1.47908 * 110.99843 * 67.94488 * 9 8 7 11 11 C 1.50801 * 108.49877 * 153.79468 * 10 9 8 12 12 C 1.53691 * 112.10524 * 92.54581 * 11 10 9 13 13 N 1.48069 * 112.47030 * 318.55816 * 12 11 10 14 14 C 1.46901 * 110.99680 * 192.19571 * 13 12 11 15 15 C 1.52996 * 109.47247 * 311.66764 * 14 13 12 16 16 H 1.09002 * 109.47323 * 60.01198 * 15 14 13 17 17 O 1.42901 * 109.46901 * 300.00863 * 15 14 13 18 18 C 1.50699 * 109.47125 * 180.02562 * 15 14 13 19 19 H 1.08000 * 120.00353 * 359.97438 * 18 15 14 20 20 C 1.37884 * 120.00294 * 179.97438 * 18 15 14 21 21 N 1.31508 * 120.00268 * 179.97438 * 20 18 15 22 22 Si 1.86800 * 119.99508 * 0.02562 * 20 18 15 23 23 H 1.48503 * 109.47048 * 89.99905 * 22 20 18 24 24 H 1.48501 * 109.46803 * 209.99527 * 22 20 18 25 25 H 1.48494 * 109.47485 * 329.99602 * 22 20 18 26 26 C 1.44573 * 113.85187 * 318.31089 * 13 12 11 27 27 C 1.40011 * 110.99680 * 299.97771 * 9 8 7 28 28 H 1.07993 * 120.04441 * 359.96074 * 4 3 2 29 29 H 1.08005 * 119.81822 * 179.72398 * 5 4 3 30 30 H 1.08006 * 119.78345 * 180.02562 * 6 5 4 31 31 H 1.07998 * 119.96812 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.63029 * 273.49093 * 10 9 8 33 33 H 1.08993 * 109.63501 * 34.08868 * 10 9 8 34 34 H 1.09005 * 108.95519 * 331.87077 * 11 10 9 35 35 H 1.09000 * 108.95586 * 213.22680 * 11 10 9 36 36 H 1.08997 * 108.88555 * 197.78157 * 12 11 10 37 37 H 1.09001 * 108.80546 * 79.27061 * 12 11 10 38 38 H 1.09001 * 109.47173 * 71.67195 * 14 13 12 39 39 H 1.09002 * 109.46693 * 191.66538 * 14 13 12 40 40 H 0.96695 * 114.00313 * 299.99986 * 17 15 14 41 41 H 0.96994 * 120.00215 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.57939 * 334.42175 * 26 13 12 43 43 H 1.09001 * 109.57488 * 214.03628 * 26 13 12 44 44 H 1.08995 * 108.96409 * 308.76468 * 27 9 8 45 45 H 1.09006 * 108.96143 * 67.42301 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 1.1404 -0.3999 5 6 4.6485 1.1346 -0.3971 6 6 5.3430 0.0033 0.0001 7 6 4.6636 -1.1305 0.3968 8 6 3.2748 -1.1439 0.4007 9 7 2.5881 -2.2849 0.8005 10 6 2.7765 -2.5378 2.2455 11 6 1.5869 -3.3121 2.7549 12 6 1.8216 -4.8302 2.7077 13 7 2.5036 -5.2591 1.4654 14 6 2.4551 -6.7197 1.3157 15 6 2.8819 -7.3812 2.6276 16 1 2.2054 -7.0754 3.4257 17 8 4.2143 -6.9794 2.9523 18 6 2.8328 -8.8796 2.4738 19 1 2.5274 -9.3163 1.5345 20 6 3.1779 -9.6930 3.5324 21 7 3.1346 -11.0005 3.3983 22 14 3.7055 -8.9375 5.1573 23 1 2.5139 -8.7387 6.0208 24 1 4.6636 -9.8457 5.8373 25 1 4.3585 -7.6278 4.9055 26 6 2.0174 -4.5998 0.2741 27 6 2.9089 -3.3756 -0.0167 28 1 2.7342 2.0246 -0.7110 29 1 5.1899 2.0150 -0.7108 30 1 6.4231 0.0090 -0.0009 31 1 5.2123 -2.0083 0.7045 32 1 3.6854 -3.1195 2.4001 33 1 2.8507 -1.5890 2.7768 34 1 0.7180 -3.0690 2.1432 35 1 1.3866 -3.0165 3.7847 36 1 0.8597 -5.3382 2.7756 37 1 2.4330 -5.1179 3.5630 38 1 1.4388 -7.0261 1.0680 39 1 3.1315 -7.0257 0.5176 40 1 4.8712 -7.2196 2.2847 41 1 3.3769 -11.5727 4.1431 42 1 0.9892 -4.2738 0.4309 43 1 2.0592 -5.2903 -0.5683 44 1 2.7830 -3.0858 -1.0598 45 1 3.9509 -3.6487 0.1500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809573580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:59 Heat of formation + Delta-G solvation = 36.956506 kcal Electronic energy + Delta-G solvation = -26502.934791 eV Core-core repulsion = 22907.221854 eV Total energy + Delta-G solvation = -3595.712936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.79206 -38.71729 -36.83507 -36.39896 -34.94149 -32.56578 -32.23851 -31.64840 -30.75434 -28.93834 -26.82763 -26.02406 -24.09215 -23.95641 -22.81398 -20.96927 -20.50448 -19.26920 -19.09648 -17.55140 -17.10140 -16.16726 -15.50092 -15.48394 -15.28241 -14.87771 -14.81801 -14.45413 -14.24457 -13.96819 -13.91501 -13.59173 -13.35207 -13.10522 -12.89870 -12.73393 -12.55049 -12.29909 -12.08914 -11.95538 -11.77235 -11.54724 -11.44310 -11.21769 -10.98999 -10.89823 -10.59407 -10.55825 -10.29292 -9.86627 -9.32050 -9.07652 -8.98228 -8.63078 -8.52471 -8.22707 -7.70747 -6.14016 -4.25151 0.48728 0.90393 2.67070 2.79433 3.37527 3.47326 3.57093 3.63123 3.73467 3.77465 4.26894 4.52333 4.55026 4.63049 4.78319 4.93507 5.03897 5.08376 5.19917 5.20890 5.22188 5.31916 5.44160 5.49091 5.60860 5.72738 5.75952 5.81744 5.85764 5.91634 5.98162 6.02637 6.06363 6.09545 6.16030 6.21120 6.33065 6.35993 6.45558 6.63502 7.00824 7.25935 7.30934 7.41689 7.48160 7.66544 7.72761 8.28509 8.82759 9.08111 9.50909 10.96794 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.003131 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.990683 B = 8939.347954 C = 9286.742751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.269 3.731 3 C -0.016 4.016 4 C -0.069 4.069 5 C -0.128 4.128 6 C -0.081 4.081 7 C -0.147 4.147 8 C 0.152 3.848 9 N -0.524 5.524 10 C 0.079 3.921 11 C -0.120 4.120 12 C 0.062 3.938 13 N -0.545 5.545 14 C 0.046 3.954 15 C 0.197 3.803 16 H 0.053 0.947 17 O -0.572 6.572 18 C -0.566 4.566 19 H 0.070 0.930 20 C 0.083 3.917 21 N -0.894 5.894 22 Si 0.871 3.129 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.215 1.215 26 C 0.064 3.936 27 C 0.079 3.921 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.070 0.930 40 H 0.355 0.645 41 H 0.265 0.735 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 24.605 -7.142 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.046 4.046 3 C -0.021 4.021 4 C -0.090 4.090 5 C -0.146 4.146 6 C -0.100 4.100 7 C -0.168 4.168 8 C 0.055 3.945 9 N -0.246 5.246 10 C -0.046 4.046 11 C -0.159 4.159 12 C -0.066 4.066 13 N -0.270 5.270 14 C -0.081 4.081 15 C 0.139 3.861 16 H 0.071 0.929 17 O -0.377 6.377 18 C -0.604 4.604 19 H 0.089 0.911 20 C -0.121 4.121 21 N -0.531 5.531 22 Si 0.697 3.303 23 H -0.215 1.215 24 H -0.223 1.223 25 H -0.138 1.138 26 C -0.066 4.066 27 C -0.049 4.049 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.201 0.799 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.530 24.832 -6.537 25.802 hybrid contribution 0.737 -0.695 0.292 1.054 sum 3.267 24.138 -6.245 25.146 Atomic orbital electron populations 1.81201 1.12081 1.07976 1.08361 1.25343 0.92360 0.93130 0.93767 1.16082 0.84736 0.95089 1.06176 1.21121 0.94397 0.96378 0.97101 1.21079 0.93563 0.98899 1.01092 1.21294 1.00458 0.92458 0.95839 1.21791 0.94082 0.99597 1.01287 1.18714 0.90211 0.90635 0.94917 1.56738 1.59203 1.03540 1.05099 1.21836 0.99249 0.99274 0.84214 1.21465 0.98550 0.94802 1.01034 1.22419 0.96947 0.93652 0.93542 1.60772 1.57575 1.07281 1.01365 1.22832 0.99490 0.84398 1.01353 1.19774 0.82015 0.93122 0.91143 0.92927 1.86635 1.18597 1.83509 1.48971 1.21523 1.48412 0.89659 1.00767 0.91142 1.24993 0.93267 0.94452 0.99402 1.69955 1.47158 1.03540 1.32459 0.87029 0.78884 0.82284 0.82067 1.21547 1.22288 1.13763 1.21848 0.96745 0.94628 0.93372 1.21081 0.98936 0.89539 0.95352 0.84909 0.85031 0.85291 0.84781 0.91509 0.91408 0.91368 0.91123 0.95115 0.89980 0.95168 0.91197 0.79923 0.92595 0.93594 0.90968 0.91482 0.93924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.03 18.54 41.84 0.78 -5.25 16 2 C 0.27 3.23 14.81 -22.47 -0.33 2.90 16 3 C -0.02 -0.16 5.76 -106.62 -0.61 -0.77 16 4 C -0.07 -0.46 9.75 -39.18 -0.38 -0.85 16 5 C -0.13 -0.70 10.02 -39.62 -0.40 -1.10 16 6 C -0.08 -0.50 10.03 -39.54 -0.40 -0.89 16 7 C -0.15 -1.20 8.89 -39.43 -0.35 -1.55 16 8 C 0.15 1.50 4.35 -83.56 -0.36 1.14 16 9 N -0.52 -6.05 3.40 -175.70 -0.60 -6.65 16 10 C 0.08 0.93 4.99 -4.37 -0.02 0.91 16 11 C -0.12 -1.57 5.36 -27.47 -0.15 -1.71 16 12 C 0.06 0.97 4.29 -2.82 -0.01 0.96 16 13 N -0.55 -8.72 3.94 -234.31 -0.92 -9.64 16 14 C 0.05 0.88 4.42 -3.83 -0.02 0.86 16 15 C 0.20 4.43 1.68 -27.89 -0.05 4.39 16 16 H 0.05 1.24 5.98 -51.93 -0.31 0.93 16 17 O -0.57 -12.46 9.89 -35.23 -0.35 -12.81 16 18 C -0.57 -15.45 9.34 -34.44 -0.32 -15.77 16 19 H 0.07 2.08 7.99 -52.49 -0.42 1.67 16 20 C 0.08 2.37 5.47 -17.82 -0.10 2.28 16 21 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 22 Si 0.87 21.58 26.99 -169.99 -4.59 16.99 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.22 -5.16 5.31 56.52 0.30 -4.86 16 26 C 0.06 0.88 5.45 -4.44 -0.02 0.86 16 27 C 0.08 0.95 4.72 -6.75 -0.03 0.92 16 28 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 29 H 0.13 0.40 8.06 -52.48 -0.42 -0.03 16 30 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 31 H 0.13 1.11 7.39 -52.49 -0.39 0.72 16 32 H 0.07 0.87 7.57 -51.93 -0.39 0.48 16 33 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 34 H 0.07 0.95 7.23 -51.93 -0.38 0.58 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.51 8.01 -51.93 -0.42 0.10 16 37 H 0.08 1.44 6.86 -51.93 -0.36 1.09 16 38 H 0.03 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.35 7.01 9.04 45.56 0.41 7.42 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.05 0.68 6.93 -51.93 -0.36 0.32 16 43 H 0.07 0.97 7.62 -51.93 -0.40 0.58 16 44 H 0.07 0.75 7.99 -51.93 -0.41 0.33 16 45 H 0.04 0.53 7.13 -51.93 -0.37 0.16 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -31.75 360.04 -9.01 -40.76 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.97 Total: 5.03 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -3.56 Total: -7.43 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.03 Total: -47.96 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.35 Total: -12.81 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.59 Total: 16.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.75 -9.01 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.713 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds