Wall clock time and date at job start Tue Mar 31 2020 12:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39731 * 120.20335 * 160.65980 * 3 2 1 5 5 C 1.37802 * 119.91382 * 179.97438 * 4 3 2 6 6 C 1.38566 * 120.34720 * 0.02562 * 5 4 3 7 7 C 1.38008 * 120.42470 * 0.02562 * 6 5 4 8 8 C 1.38885 * 120.06912 * 359.97438 * 7 6 5 9 9 N 1.39036 * 120.17209 * 180.02562 * 8 7 6 10 10 C 1.47908 * 110.99843 * 67.94488 * 9 8 7 11 11 C 1.50801 * 108.49877 * 153.79468 * 10 9 8 12 12 C 1.53691 * 112.10524 * 92.54581 * 11 10 9 13 13 N 1.48069 * 112.47030 * 318.55816 * 12 11 10 14 14 C 1.46901 * 110.99680 * 192.19571 * 13 12 11 15 15 C 1.52996 * 109.47247 * 311.66764 * 14 13 12 16 16 H 1.09002 * 109.47323 * 60.01198 * 15 14 13 17 17 O 1.42901 * 109.46901 * 300.00863 * 15 14 13 18 18 C 1.50699 * 109.47125 * 180.02562 * 15 14 13 19 19 H 1.08000 * 120.00353 * 359.97438 * 18 15 14 20 20 C 1.37884 * 120.00294 * 179.97438 * 18 15 14 21 21 N 1.31508 * 120.00268 * 179.97438 * 20 18 15 22 22 Si 1.86800 * 119.99508 * 0.02562 * 20 18 15 23 23 H 1.48503 * 109.47048 * 89.99905 * 22 20 18 24 24 H 1.48501 * 109.46803 * 209.99527 * 22 20 18 25 25 H 1.48494 * 109.47485 * 329.99602 * 22 20 18 26 26 C 1.44573 * 113.85187 * 318.31089 * 13 12 11 27 27 C 1.40011 * 110.99680 * 299.97771 * 9 8 7 28 28 H 1.07993 * 120.04441 * 359.96074 * 4 3 2 29 29 H 1.08005 * 119.81822 * 179.72398 * 5 4 3 30 30 H 1.08006 * 119.78345 * 180.02562 * 6 5 4 31 31 H 1.07998 * 119.96812 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.63029 * 273.49093 * 10 9 8 33 33 H 1.08993 * 109.63501 * 34.08868 * 10 9 8 34 34 H 1.09005 * 108.95519 * 331.87077 * 11 10 9 35 35 H 1.09000 * 108.95586 * 213.22680 * 11 10 9 36 36 H 1.08997 * 108.88555 * 197.78157 * 12 11 10 37 37 H 1.09001 * 108.80546 * 79.27061 * 12 11 10 38 38 H 1.09001 * 109.47173 * 71.67195 * 14 13 12 39 39 H 1.09002 * 109.46693 * 191.66538 * 14 13 12 40 40 H 0.96695 * 114.00313 * 299.99986 * 17 15 14 41 41 H 0.96994 * 120.00215 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.57939 * 334.42175 * 26 13 12 43 43 H 1.09001 * 109.57488 * 214.03628 * 26 13 12 44 44 H 1.08995 * 108.96409 * 308.76468 * 27 9 8 45 45 H 1.09006 * 108.96143 * 67.42301 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 1.1404 -0.3999 5 6 4.6485 1.1346 -0.3971 6 6 5.3430 0.0033 0.0001 7 6 4.6636 -1.1305 0.3968 8 6 3.2748 -1.1439 0.4007 9 7 2.5881 -2.2849 0.8005 10 6 2.7765 -2.5378 2.2455 11 6 1.5869 -3.3121 2.7549 12 6 1.8216 -4.8302 2.7077 13 7 2.5036 -5.2591 1.4654 14 6 2.4551 -6.7197 1.3157 15 6 2.8819 -7.3812 2.6276 16 1 2.2054 -7.0754 3.4257 17 8 4.2143 -6.9794 2.9523 18 6 2.8328 -8.8796 2.4738 19 1 2.5274 -9.3163 1.5345 20 6 3.1779 -9.6930 3.5324 21 7 3.1346 -11.0005 3.3983 22 14 3.7055 -8.9375 5.1573 23 1 2.5139 -8.7387 6.0208 24 1 4.6636 -9.8457 5.8373 25 1 4.3585 -7.6278 4.9055 26 6 2.0174 -4.5998 0.2741 27 6 2.9089 -3.3756 -0.0167 28 1 2.7342 2.0246 -0.7110 29 1 5.1899 2.0150 -0.7108 30 1 6.4231 0.0090 -0.0009 31 1 5.2123 -2.0083 0.7045 32 1 3.6854 -3.1195 2.4001 33 1 2.8507 -1.5890 2.7768 34 1 0.7180 -3.0690 2.1432 35 1 1.3866 -3.0165 3.7847 36 1 0.8597 -5.3382 2.7756 37 1 2.4330 -5.1179 3.5630 38 1 1.4388 -7.0261 1.0680 39 1 3.1315 -7.0257 0.5176 40 1 4.8712 -7.2196 2.2847 41 1 3.3769 -11.5727 4.1431 42 1 0.9892 -4.2738 0.4309 43 1 2.0592 -5.2903 -0.5683 44 1 2.7830 -3.0858 -1.0598 45 1 3.9509 -3.6487 0.1500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809573580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:58 Heat of formation + Delta-G solvation = 15.191303 kcal Electronic energy + Delta-G solvation = -26503.878601 eV Core-core repulsion = 22907.221854 eV Total energy + Delta-G solvation = -3596.656746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59301 -39.76721 -38.17349 -37.31557 -36.32792 -34.40471 -33.66150 -32.26521 -31.73468 -30.32609 -28.26106 -27.12650 -25.70300 -24.55846 -23.62713 -22.58129 -21.42740 -20.59798 -19.79873 -19.41906 -18.03280 -17.09616 -16.86524 -16.56886 -16.41215 -16.32962 -16.06506 -15.59268 -15.52990 -15.21813 -14.91419 -14.82527 -14.62147 -14.25435 -14.00877 -13.80864 -13.66799 -13.40357 -13.31240 -13.11837 -12.93655 -12.71896 -12.67314 -12.54850 -12.36063 -12.26001 -11.98499 -11.80713 -11.67049 -11.58318 -10.98903 -10.81041 -10.08599 -9.88719 -9.67266 -9.38098 -9.06695 -8.35914 -6.50545 -0.13380 0.36703 1.39544 1.45173 1.75171 1.79042 2.08091 2.43534 2.75455 2.92229 2.96944 3.03199 3.04052 3.83463 3.98895 4.02579 4.09157 4.09596 4.12561 4.22950 4.33041 4.39462 4.43666 4.51133 4.51711 4.58114 4.61383 4.69146 4.75983 4.89623 4.93846 4.98017 5.01391 5.06622 5.11532 5.25663 5.38932 5.45092 5.46212 5.51499 5.55850 5.85232 6.02931 6.09830 6.20532 6.40100 6.46236 6.62570 6.63064 7.22539 7.37960 8.78514 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023988 B = 0.003131 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.990683 B = 8939.347954 C = 9286.742751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.289 3.711 3 C -0.036 4.036 4 C -0.062 4.062 5 C -0.117 4.117 6 C -0.071 4.071 7 C -0.153 4.153 8 C 0.135 3.865 9 N -0.533 5.533 10 C 0.086 3.914 11 C -0.111 4.111 12 C 0.063 3.937 13 N -0.538 5.538 14 C 0.059 3.941 15 C 0.209 3.791 16 H 0.048 0.952 17 O -0.570 6.570 18 C -0.567 4.567 19 H 0.034 0.966 20 C 0.027 3.973 21 N -0.942 5.942 22 Si 0.938 3.062 23 H -0.288 1.288 24 H -0.298 1.298 25 H -0.199 1.199 26 C 0.063 3.937 27 C 0.092 3.908 28 H 0.152 0.848 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.131 0.869 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.016 0.984 37 H 0.067 0.933 38 H 0.017 0.983 39 H 0.072 0.928 40 H 0.367 0.633 41 H 0.267 0.733 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 28.066 -7.200 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.025 4.025 3 C -0.041 4.041 4 C -0.082 4.082 5 C -0.134 4.134 6 C -0.091 4.091 7 C -0.173 4.173 8 C 0.039 3.961 9 N -0.254 5.254 10 C -0.039 4.039 11 C -0.149 4.149 12 C -0.065 4.065 13 N -0.263 5.263 14 C -0.069 4.069 15 C 0.151 3.849 16 H 0.065 0.935 17 O -0.376 6.376 18 C -0.605 4.605 19 H 0.052 0.948 20 C -0.172 4.172 21 N -0.581 5.581 22 Si 0.763 3.237 23 H -0.215 1.215 24 H -0.225 1.225 25 H -0.121 1.121 26 C -0.066 4.066 27 C -0.037 4.037 28 H 0.170 0.830 29 H 0.183 0.817 30 H 0.173 0.827 31 H 0.149 0.851 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.034 0.966 37 H 0.085 0.915 38 H 0.035 0.965 39 H 0.091 0.909 40 H 0.214 0.786 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.710 28.322 -6.619 29.464 hybrid contribution 0.118 -1.733 0.203 1.749 sum 4.828 26.589 -6.415 27.775 Atomic orbital electron populations 1.81209 1.13656 1.09729 1.10581 1.25825 0.92881 0.91616 0.92209 1.16236 0.83337 0.96292 1.08220 1.21403 0.95139 0.95891 0.95804 1.21471 0.92971 0.99690 0.99294 1.21637 1.01818 0.91640 0.93965 1.21794 0.93206 1.00486 1.01858 1.18717 0.90936 0.90003 0.96486 1.56637 1.60046 1.03996 1.04760 1.21737 0.97864 0.99469 0.84833 1.21393 0.98783 0.92814 1.01907 1.22401 0.95699 0.95579 0.92771 1.60780 1.57854 1.05273 1.02370 1.22533 0.98636 0.86354 0.99375 1.19497 0.82464 0.90259 0.92688 0.93477 1.86565 1.18318 1.83133 1.49605 1.21874 1.47113 0.92411 0.99138 0.94759 1.25873 0.93550 0.94698 1.03093 1.70084 1.49194 1.05115 1.33697 0.85996 0.78350 0.81831 0.77556 1.21503 1.22454 1.12105 1.21920 0.96749 0.95503 0.92413 1.20907 0.98039 0.88799 0.95958 0.83020 0.81703 0.82728 0.85090 0.92482 0.90042 0.92423 0.89658 0.96566 0.91476 0.96460 0.90947 0.78609 0.92475 0.94558 0.90646 0.90526 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.68 18.54 19.00 0.35 -13.32 16 2 C 0.29 6.71 14.81 88.33 1.31 8.02 16 3 C -0.04 -0.61 5.76 -21.16 -0.12 -0.74 16 4 C -0.06 -0.61 9.75 22.53 0.22 -0.39 16 5 C -0.12 -0.72 10.02 22.24 0.22 -0.50 16 6 C -0.07 -0.57 10.03 22.29 0.22 -0.34 16 7 C -0.15 -2.06 8.89 22.37 0.20 -1.86 16 8 C 0.13 2.39 4.35 38.67 0.17 2.55 16 9 N -0.53 -11.63 3.40 -709.81 -2.42 -14.04 16 10 C 0.09 1.91 4.99 85.39 0.43 2.34 16 11 C -0.11 -2.80 5.36 30.11 0.16 -2.64 16 12 C 0.06 1.97 4.29 86.31 0.37 2.34 16 13 N -0.54 -17.00 3.94 -895.22 -3.52 -20.53 16 14 C 0.06 2.24 4.42 86.30 0.38 2.62 16 15 C 0.21 9.38 1.68 29.85 0.05 9.43 16 16 H 0.05 2.20 5.98 -2.39 -0.01 2.19 16 17 O -0.57 -23.97 9.89 -148.98 -1.47 -25.45 16 18 C -0.57 -31.62 9.34 25.60 0.24 -31.38 16 19 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 20 C 0.03 1.58 5.47 84.66 0.46 2.04 16 21 N -0.94 -58.65 13.96 21.45 0.30 -58.35 16 22 Si 0.94 44.84 26.99 68.60 1.85 46.69 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.20 -8.94 5.31 99.48 0.53 -8.41 16 26 C 0.06 1.73 5.45 87.15 0.47 2.20 16 27 C 0.09 2.08 4.72 87.95 0.41 2.49 16 28 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 29 H 0.17 0.00 8.06 -2.91 -0.02 -0.03 16 30 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 31 H 0.13 1.84 7.39 -2.91 -0.02 1.82 16 32 H 0.06 1.40 7.57 -2.38 -0.02 1.38 16 33 H 0.08 1.60 7.84 -2.39 -0.02 1.58 16 34 H 0.06 1.60 7.23 -2.38 -0.02 1.58 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.02 0.55 8.01 -2.39 -0.02 0.53 16 37 H 0.07 2.31 6.86 -2.39 -0.02 2.30 16 38 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 39 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.37 13.86 9.04 -74.06 -0.67 13.19 16 41 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 42 H 0.04 1.07 6.93 -2.39 -0.02 1.06 16 43 H 0.08 2.00 7.62 -2.39 -0.02 1.99 16 44 H 0.08 1.60 7.99 -2.39 -0.02 1.58 16 45 H 0.04 0.96 7.13 -2.38 -0.02 0.94 16 Total: -1.00 -70.56 360.04 0.44 -70.12 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.15 Total: 18.70 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.20 Total: -3.81 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -5.29 Total: -106.24 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -1.47 Total: -25.45 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.85 Total: 46.69 kcal Total: -70.56 0.44 -70.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809573580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.313 kcal (2) G-P(sol) polarization free energy of solvation -70.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds