Wall clock time and date at job start Tue Mar 31 2020 10:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47481 * 2 1 4 4 C 1.46503 * 120.00630 * 270.00283 * 3 2 1 5 5 C 1.50696 * 109.47130 * 270.00304 * 4 3 2 6 6 H 1.08007 * 120.00272 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00167 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99483 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00101 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46906 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47131 * 119.99492 * 9 7 5 12 12 H 1.48498 * 109.46891 * 239.99768 * 9 7 5 13 13 C 1.34778 * 120.00003 * 90.00006 * 3 2 1 14 14 O 1.21279 * 120.00219 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00089 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47505 * 180.02562 * 15 13 3 17 17 C 1.34231 * 116.99869 * 180.02562 * 16 15 13 18 18 O 1.20825 * 119.99975 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99819 * 179.97438 * 17 16 15 20 20 F 1.39905 * 109.46943 * 309.99746 * 19 17 16 21 21 C 1.52997 * 109.47078 * 69.99652 * 19 17 16 22 22 C 1.53002 * 109.47143 * 180.02562 * 21 19 17 23 23 C 1.53008 * 109.46800 * 300.00009 * 22 21 19 24 24 C 1.53001 * 109.47105 * 60.00402 * 23 22 21 25 25 C 1.52997 * 109.47265 * 189.99848 * 19 17 16 26 26 H 1.08999 * 109.47090 * 300.00204 * 1 2 3 27 27 H 1.09004 * 109.47231 * 59.99556 * 1 2 3 28 28 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46770 * 240.00332 * 2 1 3 30 30 H 1.09004 * 109.47231 * 120.00444 * 2 1 3 31 31 H 1.09010 * 109.46703 * 29.99789 * 4 3 2 32 32 H 1.08995 * 109.47419 * 149.99331 * 4 3 2 33 33 H 0.97006 * 119.99594 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47064 * 59.99611 * 15 13 3 35 35 H 1.09007 * 109.47453 * 300.00335 * 15 13 3 36 36 H 1.09004 * 109.47261 * 300.00035 * 21 19 17 37 37 H 1.09002 * 109.47153 * 60.00207 * 21 19 17 38 38 H 1.09000 * 109.47312 * 180.02562 * 22 21 19 39 39 H 1.09002 * 109.47067 * 59.99982 * 22 21 19 40 40 H 1.08992 * 109.47290 * 299.99830 * 23 22 21 41 41 H 1.09001 * 109.46630 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.46778 * 179.97438 * 24 23 22 43 43 H 1.08992 * 109.47056 * 59.99291 * 24 23 22 44 44 H 1.09002 * 109.47045 * 299.99841 * 25 19 17 45 45 H 1.09000 * 109.47140 * 59.99748 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2307 -1.0959 7 6 4.1495 2.3906 -2.8774 8 7 3.3495 3.1268 -3.6173 9 14 5.9138 2.0975 -3.4164 10 1 6.6014 1.2421 -2.4160 11 1 5.9217 1.4190 -4.7373 12 1 6.6211 3.3988 -3.5240 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1673 15 6 1.9924 1.3059 2.4723 16 8 2.3063 2.1957 3.5760 17 6 2.1361 1.7116 4.8163 18 8 1.7376 0.5819 4.9746 19 6 2.4420 2.5770 6.0115 20 9 3.7131 3.1428 5.8644 21 6 1.3974 3.6900 6.1160 22 6 1.7084 4.5691 7.3291 23 6 1.6740 3.7163 8.5990 24 6 2.7187 2.6034 8.4945 25 6 2.4072 1.7241 7.2812 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6878 -2.0284 32 1 2.0956 3.1410 -1.1383 33 1 3.6756 3.5174 -4.4433 34 1 2.6229 0.4186 2.5298 35 1 0.9445 1.0113 2.5303 36 1 1.4222 4.2977 5.2114 37 1 0.4071 3.2492 6.2306 38 1 0.9639 5.3617 7.4038 39 1 2.6986 5.0098 7.2140 40 1 0.6838 3.2756 8.7140 41 1 1.8951 4.3427 9.4632 42 1 2.6944 1.9963 9.3994 43 1 3.7088 3.0442 8.3794 44 1 1.4169 1.2833 7.3957 45 1 3.1514 0.9311 7.2067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811249842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:27 Heat of formation + Delta-G solvation = -184.437319 kcal Electronic energy + Delta-G solvation = -27215.331637 eV Core-core repulsion = 23146.956369 eV Total energy + Delta-G solvation = -4068.375269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.14747 -40.73257 -39.06919 -37.91523 -36.49679 -35.33678 -32.85981 -31.44247 -31.22318 -30.20372 -29.16145 -26.65620 -24.51787 -23.22838 -23.10104 -22.57537 -21.15898 -19.97634 -18.78689 -18.19829 -17.22787 -16.92136 -16.47185 -16.13174 -15.94641 -15.76281 -15.33959 -15.03196 -14.48882 -14.38360 -13.85886 -13.84478 -13.69143 -13.44767 -13.12609 -12.89551 -12.69952 -12.63225 -12.35825 -12.20375 -12.14791 -12.08184 -11.66198 -11.48961 -11.26176 -11.18326 -10.98096 -10.96321 -10.89240 -10.66968 -10.56816 -10.49186 -10.35746 -10.15879 -9.65777 -9.03084 -8.46123 -7.77908 -6.07103 -4.11871 1.81255 2.18409 3.21382 3.29323 3.37330 3.41679 3.69391 3.96280 4.02693 4.25313 4.35903 4.44372 4.64183 4.70465 4.81612 4.83560 4.91235 5.03387 5.07009 5.14662 5.22813 5.27797 5.32281 5.36437 5.55195 5.55985 5.61057 5.65456 5.69579 5.72975 5.81788 5.84438 5.95747 6.03226 6.15386 6.16907 6.41412 6.96451 7.37343 7.39964 7.48202 7.89068 8.18857 8.26531 8.82351 8.97323 9.53355 11.01131 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.003004 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.829890 B = 9318.681629 C = 9968.363022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.516 6.516 15 C 0.046 3.954 16 O -0.316 6.316 17 C 0.446 3.554 18 O -0.494 6.494 19 C 0.145 3.855 20 F -0.179 7.179 21 C -0.142 4.142 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.127 4.127 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 -3.769 22.390 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.392 6.392 15 C -0.031 4.031 16 O -0.230 6.230 17 C 0.286 3.714 18 O -0.382 6.382 19 C 0.125 3.875 20 F -0.159 7.159 21 C -0.180 4.180 22 C -0.156 4.156 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.165 4.165 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.821 -3.368 22.188 23.455 hybrid contribution 0.989 -0.450 -0.632 1.257 sum -5.833 -3.818 21.556 22.655 Atomic orbital electron populations 1.22234 0.96512 1.01706 1.02409 1.21514 0.93761 0.83960 1.03053 1.48212 1.63821 1.13401 1.07103 1.19344 0.96527 0.93713 0.77503 1.21467 0.96835 1.32048 1.06364 0.92332 1.24934 0.97948 0.94830 0.96351 1.69940 1.35642 1.33369 1.14342 0.86426 0.84514 0.78115 0.78283 1.19774 1.20946 1.20811 1.19660 0.79841 0.87185 0.84222 1.90728 1.44326 1.17445 1.86666 1.23073 1.02785 0.92753 0.84476 1.86620 1.77631 1.44738 1.14012 1.24146 0.75062 0.86939 0.85233 1.90672 1.41865 1.18991 1.86624 1.20794 0.82080 0.93393 0.91213 1.92956 1.40333 1.86151 1.96494 1.22191 0.97697 0.96362 1.01708 1.21526 1.03229 0.97804 0.93075 1.21618 0.99435 0.97224 0.97875 1.21565 1.00119 0.97050 0.97072 1.22033 1.05115 0.97845 0.91495 0.93184 0.91740 0.91868 0.89348 0.91799 0.94591 0.93681 0.92714 0.88492 0.88556 0.88854 0.89438 0.90621 0.90711 0.91593 0.91266 0.90717 0.90906 0.88868 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.10 1.59 5.93 -4.05 -0.02 1.56 16 3 N -0.59 -12.43 2.46 -175.06 -0.43 -12.86 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.51 10.83 7.75 -10.99 -0.09 10.74 16 14 O -0.52 -13.46 16.08 -14.10 -0.23 -13.69 16 15 C 0.05 0.76 4.50 36.00 0.16 0.93 16 16 O -0.32 -5.47 9.75 -45.91 -0.45 -5.91 16 17 C 0.45 6.49 6.91 36.01 0.25 6.74 16 18 O -0.49 -7.46 15.73 -18.75 -0.29 -7.76 16 19 C 0.14 1.70 1.16 -91.78 -0.11 1.59 16 20 F -0.18 -2.47 15.75 2.25 0.04 -2.43 16 21 C -0.14 -1.37 4.98 -26.73 -0.13 -1.50 16 22 C -0.12 -0.91 5.80 -26.73 -0.16 -1.07 16 23 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 24 C -0.12 -0.86 5.80 -26.70 -0.15 -1.02 16 25 C -0.13 -1.16 4.35 -26.71 -0.12 -1.28 16 26 H 0.05 0.62 7.22 -51.93 -0.38 0.25 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.42 8.07 -51.92 -0.42 1.00 16 30 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 31 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 32 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.10 1.45 7.39 -51.93 -0.38 1.07 16 35 H 0.10 1.34 7.18 -51.92 -0.37 0.97 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.64 7.80 -51.93 -0.41 0.23 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.57 7.80 -51.93 -0.41 0.16 16 44 H 0.09 0.78 7.99 -51.93 -0.41 0.37 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -34.08 372.06 -7.90 -41.98 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.26 Total: -2.78 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -0.59 Total: 6.67 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.31 Total: -38.58 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.97 Total: -27.36 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.08 -7.90 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811249842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.460 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds