Wall clock time and date at job start Tue Mar 31 2020 10:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 109.47481 * 2 1 4 4 C 1.46503 * 120.00630 * 270.00283 * 3 2 1 5 5 C 1.50696 * 109.47130 * 270.00304 * 4 3 2 6 6 H 1.08007 * 120.00272 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00167 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99483 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00101 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46906 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47131 * 119.99492 * 9 7 5 12 12 H 1.48498 * 109.46891 * 239.99768 * 9 7 5 13 13 C 1.34778 * 120.00003 * 90.00006 * 3 2 1 14 14 O 1.21279 * 120.00219 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00089 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47505 * 180.02562 * 15 13 3 17 17 C 1.34231 * 116.99869 * 180.02562 * 16 15 13 18 18 O 1.20825 * 119.99975 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99819 * 179.97438 * 17 16 15 20 20 F 1.39905 * 109.46943 * 309.99746 * 19 17 16 21 21 C 1.52997 * 109.47078 * 69.99652 * 19 17 16 22 22 C 1.53002 * 109.47143 * 180.02562 * 21 19 17 23 23 C 1.53008 * 109.46800 * 300.00009 * 22 21 19 24 24 C 1.53001 * 109.47105 * 60.00402 * 23 22 21 25 25 C 1.52997 * 109.47265 * 189.99848 * 19 17 16 26 26 H 1.08999 * 109.47090 * 300.00204 * 1 2 3 27 27 H 1.09004 * 109.47231 * 59.99556 * 1 2 3 28 28 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46770 * 240.00332 * 2 1 3 30 30 H 1.09004 * 109.47231 * 120.00444 * 2 1 3 31 31 H 1.09010 * 109.46703 * 29.99789 * 4 3 2 32 32 H 1.08995 * 109.47419 * 149.99331 * 4 3 2 33 33 H 0.97006 * 119.99594 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47064 * 59.99611 * 15 13 3 35 35 H 1.09007 * 109.47453 * 300.00335 * 15 13 3 36 36 H 1.09004 * 109.47261 * 300.00035 * 21 19 17 37 37 H 1.09002 * 109.47153 * 60.00207 * 21 19 17 38 38 H 1.09000 * 109.47312 * 180.02562 * 22 21 19 39 39 H 1.09002 * 109.47067 * 59.99982 * 22 21 19 40 40 H 1.08992 * 109.47290 * 299.99830 * 23 22 21 41 41 H 1.09001 * 109.46630 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.46778 * 179.97438 * 24 23 22 43 43 H 1.08992 * 109.47056 * 59.99291 * 24 23 22 44 44 H 1.09002 * 109.47045 * 299.99841 * 25 19 17 45 45 H 1.09000 * 109.47140 * 59.99748 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2307 -1.0959 7 6 4.1495 2.3906 -2.8774 8 7 3.3495 3.1268 -3.6173 9 14 5.9138 2.0975 -3.4164 10 1 6.6014 1.2421 -2.4160 11 1 5.9217 1.4190 -4.7373 12 1 6.6211 3.3988 -3.5240 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1673 15 6 1.9924 1.3059 2.4723 16 8 2.3063 2.1957 3.5760 17 6 2.1361 1.7116 4.8163 18 8 1.7376 0.5819 4.9746 19 6 2.4420 2.5770 6.0115 20 9 3.7131 3.1428 5.8644 21 6 1.3974 3.6900 6.1160 22 6 1.7084 4.5691 7.3291 23 6 1.6740 3.7163 8.5990 24 6 2.7187 2.6034 8.4945 25 6 2.4072 1.7241 7.2812 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6878 -2.0284 32 1 2.0956 3.1410 -1.1383 33 1 3.6756 3.5174 -4.4433 34 1 2.6229 0.4186 2.5298 35 1 0.9445 1.0113 2.5303 36 1 1.4222 4.2977 5.2114 37 1 0.4071 3.2492 6.2306 38 1 0.9639 5.3617 7.4038 39 1 2.6986 5.0098 7.2140 40 1 0.6838 3.2756 8.7140 41 1 1.8951 4.3427 9.4632 42 1 2.6944 1.9963 9.3994 43 1 3.7088 3.0442 8.3794 44 1 1.4169 1.2833 7.3957 45 1 3.1514 0.9311 7.2067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811249842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:26 Heat of formation + Delta-G solvation = -203.577382 kcal Electronic energy + Delta-G solvation = -27216.161613 eV Core-core repulsion = 23146.956369 eV Total energy + Delta-G solvation = -4069.205244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.15186 -41.95971 -40.67216 -38.72701 -37.68914 -37.02794 -34.96350 -32.25830 -31.91903 -31.72944 -30.61470 -28.47884 -25.61322 -24.74602 -24.11579 -23.85457 -22.13440 -20.73701 -20.34570 -19.36657 -18.67970 -18.42093 -18.04730 -17.65276 -17.20794 -16.94257 -16.60213 -16.24990 -15.91212 -15.65200 -15.11063 -14.79201 -14.70485 -14.51539 -14.47581 -14.23276 -13.96307 -13.63151 -13.53637 -13.37499 -13.31385 -13.27153 -13.08756 -12.95371 -12.71255 -12.53699 -12.27667 -12.16876 -12.12250 -11.99066 -11.85602 -11.72031 -11.51633 -11.27034 -11.13858 -10.77985 -10.66967 -9.58164 -8.25563 -6.39936 0.67960 1.00773 1.35170 1.38027 1.49123 1.56807 2.20831 2.38936 3.03878 3.05541 3.22865 3.32339 3.36632 3.50466 3.80442 3.88840 4.02944 4.07583 4.11391 4.17516 4.28552 4.35549 4.39769 4.56530 4.57075 4.74405 4.82720 4.90862 4.92436 4.96463 4.99075 5.01587 5.11253 5.12697 5.17648 5.26089 5.29531 5.34452 5.48166 5.51555 5.76809 6.01781 6.24242 6.57165 6.69176 7.17469 7.33679 8.82160 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.003004 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.829890 B = 9318.681629 C = 9968.363022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.498 3.502 14 O -0.577 6.577 15 C 0.058 3.942 16 O -0.342 6.342 17 C 0.445 3.555 18 O -0.498 6.498 19 C 0.138 3.862 20 F -0.195 7.195 21 C -0.141 4.141 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.123 4.123 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.031 0.969 32 H 0.000 1.000 33 H 0.268 0.732 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 -5.628 24.418 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.285 3.715 14 O -0.457 6.457 15 C -0.019 4.019 16 O -0.257 6.257 17 C 0.286 3.714 18 O -0.385 6.385 19 C 0.119 3.881 20 F -0.175 7.175 21 C -0.179 4.179 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.161 4.161 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.049 0.951 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.255 -5.286 24.232 25.841 hybrid contribution 1.072 0.114 -1.263 1.661 sum -6.183 -5.171 22.969 24.342 Atomic orbital electron populations 1.22176 0.94134 1.03869 1.01905 1.21887 0.95704 0.80891 1.04429 1.48212 1.63516 1.15292 1.05611 1.18803 0.95614 0.91676 0.79720 1.21731 0.97834 1.32216 1.06654 0.92865 1.25840 1.02390 0.94386 0.96387 1.70049 1.37681 1.34050 1.14824 0.85367 0.78974 0.78023 0.78434 1.19253 1.19214 1.20780 1.20509 0.78448 0.86672 0.85834 1.90690 1.47073 1.20219 1.87723 1.22952 1.05053 0.92001 0.81851 1.86629 1.78278 1.45699 1.15138 1.24742 0.74577 0.87282 0.84800 1.90653 1.42198 1.19166 1.86529 1.21211 0.81816 0.94160 0.90924 1.92922 1.41595 1.86466 1.96563 1.22246 0.97954 0.95845 1.01870 1.21554 1.02940 0.98079 0.92940 1.21628 0.99863 0.96891 0.97403 1.21594 0.99865 0.97275 0.96837 1.22095 1.05640 0.97594 0.90739 0.92341 0.93647 0.88276 0.89935 0.88459 0.95058 0.98232 0.92309 0.86388 0.85367 0.90871 0.87620 0.89103 0.92055 0.90230 0.89778 0.88619 0.91951 0.87677 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.09 2.77 5.93 86.38 0.51 3.29 16 3 N -0.59 -25.34 2.46 -826.16 -2.03 -27.37 16 4 C 0.26 14.20 5.16 85.63 0.44 14.64 16 5 C -0.55 -31.71 9.39 25.60 0.24 -31.47 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.53 5.46 84.66 0.46 1.00 16 8 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 9 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 C 0.50 21.72 7.75 87.66 0.68 22.40 16 14 O -0.58 -31.66 16.08 15.77 0.25 -31.41 16 15 C 0.06 1.84 4.50 71.24 0.32 2.16 16 16 O -0.34 -11.82 9.75 -45.07 -0.44 -12.25 16 17 C 0.44 12.53 6.91 71.24 0.49 13.02 16 18 O -0.50 -14.04 15.73 21.97 0.35 -13.70 16 19 C 0.14 3.15 1.16 -11.54 -0.01 3.13 16 20 F -0.19 -5.44 15.75 44.97 0.71 -4.74 16 21 C -0.14 -2.61 4.98 30.59 0.15 -2.46 16 22 C -0.12 -1.64 5.80 30.60 0.18 -1.46 16 23 C -0.12 -1.20 5.92 30.60 0.18 -1.02 16 24 C -0.12 -1.42 5.80 30.61 0.18 -1.25 16 25 C -0.12 -2.03 4.35 30.61 0.13 -1.89 16 26 H 0.06 1.31 7.22 -2.39 -0.02 1.29 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 2.58 8.07 -2.38 -0.02 2.56 16 30 H 0.10 2.28 6.44 -2.39 -0.02 2.26 16 31 H 0.03 1.70 8.07 -2.38 -0.02 1.68 16 32 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 33 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 34 H 0.12 3.26 7.39 -2.39 -0.02 3.24 16 35 H 0.13 3.24 7.18 -2.38 -0.02 3.23 16 36 H 0.07 1.63 8.14 -2.38 -0.02 1.62 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.02 7.80 -2.39 -0.02 1.00 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.89 7.80 -2.39 -0.02 0.87 16 44 H 0.10 1.48 7.99 -2.39 -0.02 1.46 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -77.56 372.06 6.82 -70.74 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.97 Total: 10.29 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 4.69 Total: 16.93 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -1.74 Total: -83.22 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: 0.16 Total: -57.36 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.71 Total: -4.74 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.56 6.82 -70.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811249842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.835 kcal (2) G-P(sol) polarization free energy of solvation -77.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds