Wall clock time and date at job start Tue Mar 31 2020 12:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00199 * 2 1 4 4 H 1.48493 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46881 * 300.00370 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99836 * 3 2 1 7 7 C 1.37883 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99777 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00377 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47622 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47039 * 65.00060 * 12 11 10 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.47473 * 34.99539 * 14 13 12 16 16 C 1.53000 * 109.47187 * 154.99992 * 14 13 12 17 17 N 1.46502 * 109.46898 * 294.99840 * 16 14 13 18 18 C 1.34950 * 126.03687 * 124.99878 * 17 16 14 19 19 C 1.35306 * 107.74655 * 179.97438 * 18 17 16 20 20 C 1.39873 * 107.92232 * 0.02562 * 19 18 17 21 21 N 1.30843 * 108.19963 * 359.73545 * 20 19 18 22 22 C 1.50703 * 109.46742 * 274.99779 * 14 13 12 23 23 C 1.38228 * 120.00340 * 319.72996 * 22 14 13 24 24 C 1.38235 * 120.00195 * 179.79059 * 23 22 14 25 25 C 1.38240 * 119.99693 * 0.44058 * 24 23 22 26 26 C 1.38234 * 119.99939 * 359.81035 * 25 24 23 27 27 C 1.38226 * 120.00031 * 359.97438 * 26 25 24 28 28 H 0.96996 * 119.99914 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47387 * 60.00284 * 9 7 2 30 30 H 1.09000 * 109.47374 * 300.00044 * 9 7 2 31 31 H 1.09008 * 109.46886 * 59.99754 * 11 10 9 32 32 H 1.09008 * 109.46909 * 300.00659 * 11 10 9 33 33 H 1.09001 * 109.47393 * 305.00341 * 12 11 10 34 34 H 1.08998 * 109.47408 * 184.99987 * 12 11 10 35 35 H 1.00901 * 110.99869 * 56.04956 * 13 12 11 36 36 H 1.09000 * 109.46957 * 54.99480 * 16 14 13 37 37 H 1.08999 * 109.47080 * 174.99916 * 16 14 13 38 38 H 1.08003 * 126.12078 * 0.02562 * 18 17 16 39 39 H 1.08005 * 126.04204 * 180.02562 * 19 18 17 40 40 H 1.08002 * 125.89895 * 180.02562 * 20 19 18 41 41 H 1.08007 * 119.99903 * 359.97438 * 23 22 14 42 42 H 1.07995 * 120.00457 * 180.26955 * 24 23 22 43 43 H 1.08003 * 119.99572 * 179.83621 * 25 24 23 44 44 H 1.08001 * 119.99782 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.00207 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5651 -4.8754 -0.0024 12 6 2.6480 -5.9562 -0.0030 13 7 3.4081 -5.8885 1.2522 14 6 4.4596 -6.9137 1.2869 15 1 4.8616 -7.0560 0.2838 16 6 5.5802 -6.4635 2.2263 17 7 6.2240 -5.2664 1.6799 18 6 6.3821 -4.0882 2.3187 19 6 7.0214 -3.2446 1.4758 20 6 7.2619 -3.9305 0.2807 21 7 6.7890 -5.1442 0.4039 22 6 3.8787 -8.2124 1.7841 23 6 2.9666 -8.2088 2.8228 24 6 2.4305 -9.3997 3.2760 25 6 2.8134 -10.5949 2.6964 26 6 3.7293 -10.5988 1.6611 27 6 4.2620 -9.4077 1.2051 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 0.9445 -4.9818 -0.8923 32 1 0.9452 -4.9831 0.8878 33 1 3.3216 -5.7952 -0.8448 34 1 2.1820 -6.9374 -0.0931 35 1 2.7962 -5.9705 2.0503 36 1 5.1625 -6.2358 3.2071 37 1 6.3170 -7.2611 2.3214 38 1 6.0573 -3.8600 3.3231 39 1 7.2974 -2.2223 1.6883 40 1 7.7569 -3.5291 -0.5912 41 1 2.6706 -7.2753 3.2784 42 1 1.7147 -9.3966 4.0846 43 1 2.3965 -11.5255 3.0523 44 1 4.0281 -11.5326 1.2081 45 1 4.9780 -9.4108 0.3965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815071698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:10 Heat of formation + Delta-G solvation = 63.087189 kcal Electronic energy + Delta-G solvation = -25863.372779 eV Core-core repulsion = 22268.792955 eV Total energy + Delta-G solvation = -3594.579825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79108 -39.80651 -37.23083 -36.06494 -33.19875 -32.49410 -31.46719 -31.15465 -29.72240 -28.72711 -27.28521 -26.18885 -23.83578 -22.88999 -22.24467 -21.50803 -21.13994 -20.66749 -19.99664 -17.59058 -16.88466 -16.34145 -15.95344 -15.75915 -15.39192 -15.01114 -14.75275 -14.66930 -14.35573 -14.00646 -13.71281 -13.63997 -13.47309 -13.31010 -12.97594 -12.64962 -12.51167 -12.41202 -12.25360 -11.72966 -11.65958 -11.39239 -11.19415 -11.13286 -10.75515 -10.71701 -10.41692 -10.30287 -9.93754 -9.21709 -9.17693 -9.00858 -8.92257 -8.74965 -8.33699 -8.14569 -8.07785 -6.04591 -4.04878 1.03184 1.12337 2.28917 2.82098 3.27438 3.33608 3.39892 3.47897 3.50031 4.05998 4.40090 4.42015 4.60868 4.71252 4.80057 4.85582 4.93280 5.01604 5.16862 5.19148 5.23499 5.32067 5.32748 5.39048 5.49830 5.57077 5.70344 5.71420 5.78075 5.95900 6.02660 6.11469 6.15444 6.18263 6.23801 6.26821 6.34907 6.40232 6.71145 7.01365 7.07588 7.16689 7.34389 7.47887 7.49486 7.88499 8.07060 8.23835 8.68583 9.10766 9.59815 11.07255 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003615 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.447907 B = 7744.579099 C = 9384.105800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.377 6.377 11 C 0.067 3.933 12 C 0.070 3.930 13 N -0.659 5.659 14 C 0.115 3.885 15 H 0.100 0.900 16 C 0.156 3.844 17 N -0.354 5.354 18 C 0.068 3.932 19 C -0.274 4.274 20 C 0.046 3.954 21 N -0.299 5.299 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.108 4.108 28 H 0.262 0.738 29 H 0.001 0.999 30 H 0.002 0.998 31 H 0.039 0.961 32 H 0.032 0.968 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.338 0.662 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.166 0.834 39 H 0.142 0.858 40 H 0.176 0.824 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.474 -20.286 7.088 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.544 4.544 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.296 6.296 11 C -0.012 4.012 12 C -0.059 4.059 13 N -0.290 5.290 14 C 0.003 3.997 15 H 0.118 0.882 16 C 0.033 3.967 17 N -0.136 5.136 18 C -0.079 4.079 19 C -0.303 4.303 20 C -0.140 4.140 21 N -0.121 5.121 22 C -0.115 4.115 23 C -0.134 4.134 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.126 4.126 28 H 0.071 0.929 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.184 0.816 39 H 0.159 0.841 40 H 0.193 0.807 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.708 -20.849 6.349 23.858 hybrid contribution -0.709 0.906 0.577 1.288 sum 8.998 -19.943 6.927 22.949 Atomic orbital electron populations 1.69977 1.06114 1.26879 1.51174 1.24948 0.94940 0.99400 0.95339 0.86307 0.80214 0.82671 0.77502 1.19324 1.20956 1.20938 1.21100 0.94145 0.89245 1.49921 0.91424 1.20176 0.88856 0.84056 0.94962 1.87990 1.34461 1.12211 1.94978 1.22200 0.93758 0.86480 0.98733 1.21966 0.95720 0.95644 0.92591 1.60502 1.16208 1.47463 1.04835 1.20884 0.92518 0.86028 1.00238 0.88165 1.21580 0.93590 0.85102 0.96442 1.48253 1.44275 1.10249 1.10812 1.22368 0.99717 0.86405 0.99367 1.21400 1.12115 1.01598 0.95187 1.23710 0.99875 0.91690 0.98754 1.77168 1.16638 1.20555 0.97697 1.20683 0.98045 0.95971 0.96816 1.21022 0.97211 0.98488 0.96664 1.21144 0.99756 0.92434 1.00016 1.21186 0.97953 0.98087 0.96773 1.21168 0.97385 0.98019 0.97124 1.21109 0.99766 0.91906 0.99863 0.92863 0.98143 0.98064 0.94255 0.95013 0.90337 0.94780 0.84184 0.88893 0.89985 0.81642 0.84060 0.80699 0.85794 0.85924 0.86148 0.86052 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -15.32 9.43 -34.44 -0.32 -15.64 16 8 H 0.07 2.07 7.81 -52.49 -0.41 1.66 16 9 C 0.19 5.49 5.69 36.00 0.20 5.70 16 10 O -0.38 -9.48 10.27 -35.23 -0.36 -9.85 16 11 C 0.07 1.28 6.22 37.15 0.23 1.51 16 12 C 0.07 1.10 5.86 -3.82 -0.02 1.08 16 13 N -0.66 -9.54 6.11 -107.95 -0.66 -10.20 16 14 C 0.11 1.36 2.34 -68.86 -0.16 1.20 16 15 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 16 C 0.16 1.74 6.11 -4.04 -0.02 1.71 16 17 N -0.35 -5.09 3.60 -61.37 -0.22 -5.31 16 18 C 0.07 0.97 11.45 -17.23 -0.20 0.77 16 19 C -0.27 -4.10 10.80 -40.01 -0.43 -4.54 16 20 C 0.05 0.70 12.03 -17.36 -0.21 0.49 16 21 N -0.30 -4.85 12.35 30.63 0.38 -4.47 16 22 C -0.11 -1.14 4.71 -104.62 -0.49 -1.63 16 23 C -0.12 -1.09 9.11 -39.59 -0.36 -1.46 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 27 C -0.11 -1.01 9.67 -39.58 -0.38 -1.39 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 31 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 34 H 0.03 0.47 8.00 -51.93 -0.42 0.05 16 35 H 0.34 4.50 6.36 -39.29 -0.25 4.25 16 36 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.17 1.87 8.06 -52.48 -0.42 1.44 16 39 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 40 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 41 H 0.12 1.10 6.53 -52.48 -0.34 0.76 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.12 1.04 8.04 -52.48 -0.42 0.62 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -35.04 383.32 -9.69 -44.73 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.86 Total: 3.66 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -3.46 Total: -14.87 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.23 Total: -46.76 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.36 Total: -9.85 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.04 -9.69 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815071698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.819 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds