Wall clock time and date at job start Tue Mar 31 2020 12:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00199 * 2 1 4 4 H 1.48493 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46881 * 300.00370 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99836 * 3 2 1 7 7 C 1.37883 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99867 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99777 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.46933 * 179.97438 * 9 7 2 11 11 C 1.42901 * 114.00377 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47622 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.47039 * 65.00060 * 12 11 10 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 11 15 15 H 1.09000 * 109.47473 * 34.99539 * 14 13 12 16 16 C 1.53000 * 109.47187 * 154.99992 * 14 13 12 17 17 N 1.46502 * 109.46898 * 294.99840 * 16 14 13 18 18 C 1.34950 * 126.03687 * 124.99878 * 17 16 14 19 19 C 1.35306 * 107.74655 * 179.97438 * 18 17 16 20 20 C 1.39873 * 107.92232 * 0.02562 * 19 18 17 21 21 N 1.30843 * 108.19963 * 359.73545 * 20 19 18 22 22 C 1.50703 * 109.46742 * 274.99779 * 14 13 12 23 23 C 1.38228 * 120.00340 * 319.72996 * 22 14 13 24 24 C 1.38235 * 120.00195 * 179.79059 * 23 22 14 25 25 C 1.38240 * 119.99693 * 0.44058 * 24 23 22 26 26 C 1.38234 * 119.99939 * 359.81035 * 25 24 23 27 27 C 1.38226 * 120.00031 * 359.97438 * 26 25 24 28 28 H 0.96996 * 119.99914 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47387 * 60.00284 * 9 7 2 30 30 H 1.09000 * 109.47374 * 300.00044 * 9 7 2 31 31 H 1.09008 * 109.46886 * 59.99754 * 11 10 9 32 32 H 1.09008 * 109.46909 * 300.00659 * 11 10 9 33 33 H 1.09001 * 109.47393 * 305.00341 * 12 11 10 34 34 H 1.08998 * 109.47408 * 184.99987 * 12 11 10 35 35 H 1.00901 * 110.99869 * 56.04956 * 13 12 11 36 36 H 1.09000 * 109.46957 * 54.99480 * 16 14 13 37 37 H 1.08999 * 109.47080 * 174.99916 * 16 14 13 38 38 H 1.08003 * 126.12078 * 0.02562 * 18 17 16 39 39 H 1.08005 * 126.04204 * 180.02562 * 19 18 17 40 40 H 1.08002 * 125.89895 * 180.02562 * 20 19 18 41 41 H 1.08007 * 119.99903 * 359.97438 * 23 22 14 42 42 H 1.07995 * 120.00457 * 180.26955 * 24 23 22 43 43 H 1.08003 * 119.99572 * 179.83621 * 25 24 23 44 44 H 1.08001 * 119.99782 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.00207 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5651 -4.8754 -0.0024 12 6 2.6480 -5.9562 -0.0030 13 7 3.4081 -5.8885 1.2522 14 6 4.4596 -6.9137 1.2869 15 1 4.8616 -7.0560 0.2838 16 6 5.5802 -6.4635 2.2263 17 7 6.2240 -5.2664 1.6799 18 6 6.3821 -4.0882 2.3187 19 6 7.0214 -3.2446 1.4758 20 6 7.2619 -3.9305 0.2807 21 7 6.7890 -5.1442 0.4039 22 6 3.8787 -8.2124 1.7841 23 6 2.9666 -8.2088 2.8228 24 6 2.4305 -9.3997 3.2760 25 6 2.8134 -10.5949 2.6964 26 6 3.7293 -10.5988 1.6611 27 6 4.2620 -9.4077 1.2051 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 0.9445 -4.9818 -0.8923 32 1 0.9452 -4.9831 0.8878 33 1 3.3216 -5.7952 -0.8448 34 1 2.1820 -6.9374 -0.0931 35 1 2.7962 -5.9705 2.0503 36 1 5.1625 -6.2358 3.2071 37 1 6.3170 -7.2611 2.3214 38 1 6.0573 -3.8600 3.3231 39 1 7.2974 -2.2223 1.6883 40 1 7.7569 -3.5291 -0.5912 41 1 2.6706 -7.2753 3.2784 42 1 1.7147 -9.3966 4.0846 43 1 2.3965 -11.5255 3.0523 44 1 4.0281 -11.5326 1.2081 45 1 4.9780 -9.4108 0.3965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815071698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:09 Heat of formation + Delta-G solvation = 40.865037 kcal Electronic energy + Delta-G solvation = -25864.336404 eV Core-core repulsion = 22268.792955 eV Total energy + Delta-G solvation = -3595.543449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86666 -40.59864 -38.78248 -37.37680 -35.00663 -34.10176 -32.42892 -31.84262 -30.81494 -30.12168 -28.94791 -27.67113 -24.70097 -24.48421 -23.69622 -22.78944 -22.08537 -21.74380 -21.01220 -18.68851 -18.40235 -17.79789 -17.49656 -17.02178 -16.55560 -16.29225 -16.11946 -15.96791 -15.50538 -15.18014 -14.98070 -14.82059 -14.53416 -14.33071 -14.24500 -13.82338 -13.72154 -13.58955 -13.38911 -13.30107 -12.94011 -12.80706 -12.61481 -12.53447 -12.31988 -12.08916 -11.88674 -11.76495 -11.43022 -11.24264 -10.86673 -10.21213 -10.20482 -9.86746 -9.76607 -9.41711 -9.24979 -8.30897 -6.42256 0.34356 0.46232 1.18125 1.40273 1.41648 1.57307 1.81978 2.12112 2.36415 2.82258 2.99570 3.02787 3.20471 3.55059 3.85544 3.94976 4.05376 4.11689 4.17313 4.18851 4.25443 4.28332 4.29292 4.43533 4.48767 4.52342 4.61187 4.61878 4.71677 4.81083 4.91251 4.93937 5.03101 5.06047 5.11937 5.18214 5.29093 5.53002 5.53749 5.57476 5.59984 5.89456 5.96846 5.99809 6.06589 6.29862 6.41415 6.57762 6.86768 6.93468 7.29813 8.81718 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003615 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.447907 B = 7744.579099 C = 9384.105800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.057 0.943 9 C 0.210 3.790 10 O -0.394 6.394 11 C 0.059 3.941 12 C 0.086 3.914 13 N -0.676 5.676 14 C 0.128 3.872 15 H 0.080 0.920 16 C 0.150 3.850 17 N -0.356 5.356 18 C 0.061 3.939 19 C -0.296 4.296 20 C 0.029 3.971 21 N -0.328 5.328 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.118 4.118 28 H 0.270 0.730 29 H -0.020 1.020 30 H -0.016 1.016 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.344 0.656 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.193 0.807 39 H 0.152 0.848 40 H 0.193 0.807 41 H 0.127 0.873 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.700 -20.969 8.244 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.075 0.925 9 C 0.135 3.865 10 O -0.313 6.313 11 C -0.019 4.019 12 C -0.043 4.043 13 N -0.308 5.308 14 C 0.017 3.983 15 H 0.098 0.902 16 C 0.029 3.971 17 N -0.137 5.137 18 C -0.086 4.086 19 C -0.325 4.325 20 C -0.156 4.156 21 N -0.150 5.150 22 C -0.122 4.122 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.137 4.137 28 H 0.079 0.921 29 H -0.002 1.002 30 H 0.002 0.998 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.210 0.790 39 H 0.169 0.831 40 H 0.209 0.791 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.930 -21.572 7.507 24.906 hybrid contribution -0.835 0.984 0.245 1.314 sum 9.095 -20.588 7.752 23.806 Atomic orbital electron populations 1.70073 1.07709 1.28491 1.50848 1.25935 0.95937 1.03283 0.93977 0.85166 0.78757 0.77389 0.78306 1.18860 1.19735 1.19429 1.21345 0.93838 0.90813 1.51748 0.92503 1.19787 0.88616 0.85048 0.93043 1.87948 1.34582 1.13754 1.95032 1.22523 0.95252 0.84696 0.99394 1.21730 0.94516 0.95283 0.92818 1.60438 1.16674 1.49307 1.04387 1.20676 0.91744 0.86439 0.99479 0.90210 1.21856 0.93673 0.84653 0.96954 1.48515 1.43864 1.11083 1.10256 1.22889 0.99063 0.86221 1.00412 1.21710 1.12919 1.02463 0.95446 1.24133 1.00030 0.91742 0.99709 1.77099 1.17659 1.21193 0.99096 1.20454 0.98921 0.95139 0.97697 1.21113 0.97279 0.99152 0.96666 1.21410 0.99878 0.92231 1.00405 1.21519 0.97404 0.98912 0.96261 1.21441 0.97095 0.98389 0.97108 1.21244 1.00151 0.92168 1.00125 0.92106 1.00224 0.99789 0.93846 0.93977 0.92263 0.92164 0.83451 0.86926 0.88413 0.78966 0.83064 0.79059 0.85561 0.84241 0.83926 0.84107 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.98 45.49 29.54 68.60 2.03 47.52 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -33.30 9.43 25.60 0.24 -33.05 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 9 C 0.21 12.27 5.69 71.24 0.41 12.68 16 10 O -0.39 -20.29 10.27 -148.98 -1.53 -21.82 16 11 C 0.06 2.28 6.22 71.98 0.45 2.73 16 12 C 0.09 2.69 5.86 86.30 0.51 3.20 16 13 N -0.68 -19.31 6.11 -495.44 -3.03 -22.33 16 14 C 0.13 2.95 2.34 44.17 0.10 3.05 16 15 H 0.08 2.18 7.58 -2.39 -0.02 2.16 16 16 C 0.15 3.21 6.11 86.38 0.53 3.74 16 17 N -0.36 -10.10 3.60 -348.06 -1.25 -11.35 16 18 C 0.06 1.70 11.45 83.54 0.96 2.66 16 19 C -0.30 -8.88 10.80 21.99 0.24 -8.64 16 20 C 0.03 0.90 12.03 85.24 1.03 1.93 16 21 N -0.33 -10.80 12.35 -57.02 -0.70 -11.51 16 22 C -0.12 -2.26 4.71 -19.87 -0.09 -2.36 16 23 C -0.12 -2.13 9.11 22.27 0.20 -1.93 16 24 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 25 C -0.12 -1.66 10.05 22.27 0.22 -1.44 16 26 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 27 C -0.12 -2.04 9.67 22.27 0.22 -1.83 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 30 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 34 H 0.06 1.59 8.00 -2.39 -0.02 1.57 16 35 H 0.34 8.90 6.36 -89.69 -0.57 8.33 16 36 H 0.11 1.94 8.07 -2.39 -0.02 1.92 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.19 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.19 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.13 2.05 6.53 -2.91 -0.02 2.03 16 42 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 45 H 0.13 2.02 8.04 -2.91 -0.02 2.00 16 Total: -1.00 -75.77 383.32 2.11 -73.66 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.40 Total: 24.08 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 5.91 Total: -21.52 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.70 Total: -101.92 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.53 Total: -21.82 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.77 2.11 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815071698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.525 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds