Wall clock time and date at job start Tue Mar 31 2020 11:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00248 * 2 1 4 4 C 1.52997 * 109.46962 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47344 * 63.79593 * 4 3 2 6 6 C 1.46899 * 110.99924 * 200.35198 * 5 4 3 7 7 C 1.50712 * 109.47266 * 66.04385 * 6 5 4 8 8 H 1.07998 * 119.99586 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00045 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99611 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47488 * 59.99921 * 11 9 7 13 13 H 1.48504 * 109.47343 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47266 * 299.99680 * 11 9 7 15 15 C 1.46893 * 111.00372 * 76.39758 * 5 4 3 16 16 C 1.50700 * 109.47306 * 199.70902 * 15 5 4 17 17 C 1.39227 * 119.53759 * 254.95970 * 16 15 5 18 18 C 1.36141 * 121.06096 * 179.68768 * 17 16 15 19 19 C 1.40564 * 119.76373 * 0.59677 * 18 17 16 20 20 C 1.40547 * 121.26205 * 179.70694 * 19 18 17 21 21 C 1.36103 * 119.64671 * 179.97438 * 20 19 18 22 22 C 1.39353 * 120.97458 * 0.02562 * 21 20 19 23 23 C 1.36137 * 120.97471 * 359.94092 * 22 21 20 24 24 C 1.40402 * 119.66402 * 0.08105 * 23 22 21 25 25 C 1.36631 * 119.53701 * 75.22767 * 16 15 5 26 26 O 1.35802 * 120.23125 * 359.97438 * 25 16 15 27 27 H 1.09008 * 109.46427 * 299.99790 * 1 2 3 28 28 H 1.08993 * 109.47138 * 59.99154 * 1 2 3 29 29 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46518 * 60.00230 * 3 2 1 31 31 H 1.08996 * 109.46787 * 300.00607 * 3 2 1 32 32 H 1.09004 * 109.47246 * 303.79124 * 4 3 2 33 33 H 1.09002 * 109.47070 * 183.79195 * 4 3 2 34 34 H 1.08996 * 109.47273 * 186.04013 * 6 5 4 35 35 H 1.08996 * 109.47174 * 306.04585 * 6 5 4 36 36 H 0.97006 * 119.99643 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.46879 * 319.70499 * 15 5 4 38 38 H 1.08994 * 109.46984 * 79.70594 * 15 5 4 39 39 H 1.08005 * 119.46923 * 359.97438 * 17 16 15 40 40 H 1.08003 * 120.11792 * 180.27847 * 18 17 16 41 41 H 1.08000 * 120.17625 * 359.97438 * 20 19 18 42 42 H 1.08002 * 119.51196 * 180.02562 * 21 20 19 43 43 H 1.08009 * 119.51279 * 179.97438 * 22 21 20 44 44 H 1.08005 * 120.16523 * 180.02562 * 23 22 21 45 45 H 0.96704 * 114.00287 * 90.00106 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9749 0.5364 -1.2436 6 6 5.3221 -0.0297 -1.0943 7 6 5.2854 -1.1576 -0.0954 8 1 4.3543 -1.4266 0.3812 9 6 6.4405 -1.8452 0.2108 10 7 7.5743 -1.5173 -0.3692 11 14 6.3947 -3.2436 1.4484 12 1 5.4656 -4.2983 0.9695 13 1 7.7569 -3.8151 1.6003 14 1 5.9254 -2.7288 2.7599 15 6 3.9197 1.4731 -2.3738 16 6 3.8975 0.6994 -3.6668 17 6 5.0455 0.6426 -4.4525 18 6 5.0619 -0.0525 -5.6230 19 6 3.9009 -0.7154 -6.0572 20 6 3.8809 -1.4369 -7.2632 21 6 2.7388 -2.0669 -7.6519 22 6 1.5858 -2.0075 -6.8716 23 6 1.5691 -1.3186 -5.6975 24 6 2.7284 -0.6556 -5.2643 25 6 2.7494 0.0681 -4.0544 26 8 1.6363 0.1370 -3.2796 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8529 0.5859 0.8532 33 1 3.9788 2.1780 0.0673 34 1 5.6660 -0.4081 -2.0569 35 1 6.0046 0.7443 -0.7434 36 1 8.3870 -2.0014 -0.1541 37 1 3.0178 2.0807 -2.2984 38 1 4.7965 2.1201 -2.3525 39 1 5.9387 1.1544 -4.1259 40 1 5.9622 -0.0901 -6.2184 41 1 4.7670 -1.4911 -7.8782 42 1 2.7259 -2.6211 -8.5788 43 1 0.6923 -2.5160 -7.2029 44 1 0.6683 -1.2815 -5.1028 45 1 1.0590 0.8848 -3.4859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816503932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:03 Heat of formation + Delta-G solvation = -33.255472 kcal Electronic energy + Delta-G solvation = -26871.223129 eV Core-core repulsion = 23240.172822 eV Total energy + Delta-G solvation = -3631.050307 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39603 -38.00252 -37.24532 -36.26561 -35.29924 -32.49650 -31.62912 -30.82315 -29.15572 -28.69923 -26.88790 -25.79577 -24.51844 -23.10183 -22.17936 -21.81515 -21.49919 -19.73017 -18.13493 -17.14939 -16.44417 -16.35456 -15.86319 -15.57930 -15.34136 -14.84487 -14.55281 -14.42925 -14.31320 -13.75441 -13.73544 -13.46390 -13.01947 -12.99342 -12.93412 -12.33825 -12.00787 -11.75231 -11.63005 -11.47678 -11.37277 -11.13009 -10.99097 -10.80991 -10.73569 -10.61440 -10.52138 -10.06492 -10.01396 -9.69419 -9.48411 -9.14524 -8.99313 -8.33163 -8.26246 -7.44316 -7.08030 -5.91553 -3.90280 0.77221 1.24078 2.25654 3.20183 3.42251 3.44977 3.50531 4.25507 4.37908 4.48403 4.54418 4.86047 4.98831 5.03989 5.12824 5.24205 5.36764 5.44290 5.48604 5.52299 5.58076 5.63487 5.70783 5.72947 5.85018 5.87882 5.89966 5.96105 6.05504 6.06758 6.19034 6.24863 6.29180 6.44093 6.46681 6.62126 6.75591 6.83112 6.91076 7.01625 7.18744 7.37616 7.39650 7.79711 7.95932 8.03830 8.22381 8.31752 8.68017 9.19084 9.72962 11.19550 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.005072 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.509760 B = 5519.095731 C = 6790.476775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.076 3.924 4 C 0.060 3.940 5 N -0.510 5.510 6 C 0.194 3.806 7 C -0.498 4.498 8 H 0.067 0.933 9 C 0.054 3.946 10 N -0.902 5.902 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.097 3.903 16 C -0.084 4.084 17 C -0.080 4.080 18 C -0.125 4.125 19 C -0.040 4.040 20 C -0.109 4.109 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.091 4.091 24 C -0.075 4.075 25 C 0.141 3.859 26 O -0.465 6.465 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.095 0.905 33 H 0.032 0.968 34 H 0.033 0.967 35 H -0.014 1.014 36 H 0.259 0.741 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.127 0.873 45 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.301 6.918 -11.155 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C -0.002 4.002 4 C -0.069 4.069 5 N -0.234 5.234 6 C 0.069 3.931 7 C -0.537 4.537 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.543 5.543 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.204 1.204 15 C -0.031 4.031 16 C -0.086 4.086 17 C -0.099 4.099 18 C -0.143 4.143 19 C -0.040 4.040 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.109 4.109 24 C -0.076 4.076 25 C 0.095 3.905 26 O -0.272 6.272 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.004 0.996 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.145 0.855 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -12.079 5.800 -10.969 17.316 hybrid contribution 0.321 0.377 0.630 0.801 sum -11.758 6.178 -10.339 16.832 Atomic orbital electron populations 1.22591 0.83267 1.01841 0.98413 1.88169 1.17321 1.26838 1.94851 1.22523 0.94931 0.84933 0.97788 1.22031 0.91910 0.97168 0.95745 1.62038 1.29890 1.30636 1.00826 1.19758 0.81910 0.93786 0.97621 1.21188 0.94483 1.15341 1.22702 0.91525 1.24954 0.95460 0.97505 0.96705 1.69952 0.99165 1.41644 1.43517 0.86599 0.76696 0.82663 0.81676 1.20231 1.21563 1.20350 1.20874 0.99544 0.93015 0.89675 1.19878 0.93334 0.98940 0.96403 1.20724 0.97292 0.98185 0.93652 1.20909 0.97064 0.98764 0.97573 1.17947 0.93218 0.98153 0.94707 1.20972 0.98334 0.97754 0.95641 1.20769 0.93299 0.99979 0.99869 1.20757 0.98262 1.00478 0.95455 1.20908 0.97487 0.96587 0.95919 1.18380 0.94351 1.00372 0.94485 1.17798 0.87740 0.96366 0.88617 1.85028 1.33014 1.51066 1.58139 0.95575 0.94933 0.90478 0.94787 0.94505 0.88663 0.95009 0.94906 0.99598 0.93121 0.91678 0.95088 0.85776 0.85717 0.85824 0.86454 0.86448 0.85533 0.77528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -6.61 10.63 -35.23 -0.37 -6.98 16 3 C 0.08 1.23 6.12 37.16 0.23 1.46 16 4 C 0.06 1.17 5.18 -3.83 -0.02 1.15 16 5 N -0.51 -11.09 4.27 -237.52 -1.01 -12.11 16 6 C 0.19 5.14 4.55 -4.97 -0.02 5.11 16 7 C -0.50 -14.51 8.23 -34.43 -0.28 -14.79 16 8 H 0.07 1.98 7.32 -52.49 -0.38 1.60 16 9 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 11 Si 0.90 22.66 29.54 -169.99 -5.02 17.64 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.10 1.74 4.49 -4.98 -0.02 1.72 16 16 C -0.08 -1.50 4.80 -104.84 -0.50 -2.00 16 17 C -0.08 -1.36 8.87 -39.97 -0.35 -1.72 16 18 C -0.13 -1.95 9.77 -39.46 -0.39 -2.33 16 19 C -0.04 -0.63 5.74 -106.84 -0.61 -1.24 16 20 C -0.11 -1.44 9.77 -39.48 -0.39 -1.82 16 21 C -0.12 -1.45 9.95 -39.93 -0.40 -1.85 16 22 C -0.13 -1.62 9.95 -39.92 -0.40 -2.02 16 23 C -0.09 -1.28 9.56 -39.52 -0.38 -1.66 16 24 C -0.08 -1.22 5.75 -106.73 -0.61 -1.84 16 25 C 0.14 2.39 6.65 -39.12 -0.26 2.13 16 26 O -0.47 -7.19 11.96 -19.12 -0.23 -7.42 16 27 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.54 6.72 -51.93 -0.35 0.19 16 32 H 0.10 2.12 6.58 -51.93 -0.34 1.78 16 33 H 0.03 0.56 7.99 -51.93 -0.41 0.15 16 34 H 0.03 0.94 6.87 -51.93 -0.36 0.58 16 35 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.06 1.00 6.31 -51.93 -0.33 0.67 16 38 H 0.03 0.55 7.78 -51.93 -0.40 0.15 16 39 H 0.12 2.02 7.97 -52.48 -0.42 1.60 16 40 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.13 1.60 7.62 -52.48 -0.40 1.20 16 45 H 0.37 3.82 9.06 45.56 0.41 4.24 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -34.35 372.28 -9.61 -43.96 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.92 Total: 2.57 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -3.39 Total: -16.60 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: -0.28 Total: -38.78 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.60 Total: -14.40 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.35 -9.61 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816503932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.701 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds