Wall clock time and date at job start Tue Mar 31 2020 11:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00248 * 2 1 4 4 C 1.52997 * 109.46962 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47344 * 63.79593 * 4 3 2 6 6 C 1.46899 * 110.99924 * 200.35198 * 5 4 3 7 7 C 1.50712 * 109.47266 * 66.04385 * 6 5 4 8 8 H 1.07998 * 119.99586 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00045 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99611 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47488 * 59.99921 * 11 9 7 13 13 H 1.48504 * 109.47343 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47266 * 299.99680 * 11 9 7 15 15 C 1.46893 * 111.00372 * 76.39758 * 5 4 3 16 16 C 1.50700 * 109.47306 * 199.70902 * 15 5 4 17 17 C 1.39227 * 119.53759 * 254.95970 * 16 15 5 18 18 C 1.36141 * 121.06096 * 179.68768 * 17 16 15 19 19 C 1.40564 * 119.76373 * 0.59677 * 18 17 16 20 20 C 1.40547 * 121.26205 * 179.70694 * 19 18 17 21 21 C 1.36103 * 119.64671 * 179.97438 * 20 19 18 22 22 C 1.39353 * 120.97458 * 0.02562 * 21 20 19 23 23 C 1.36137 * 120.97471 * 359.94092 * 22 21 20 24 24 C 1.40402 * 119.66402 * 0.08105 * 23 22 21 25 25 C 1.36631 * 119.53701 * 75.22767 * 16 15 5 26 26 O 1.35802 * 120.23125 * 359.97438 * 25 16 15 27 27 H 1.09008 * 109.46427 * 299.99790 * 1 2 3 28 28 H 1.08993 * 109.47138 * 59.99154 * 1 2 3 29 29 H 1.08996 * 109.47293 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46518 * 60.00230 * 3 2 1 31 31 H 1.08996 * 109.46787 * 300.00607 * 3 2 1 32 32 H 1.09004 * 109.47246 * 303.79124 * 4 3 2 33 33 H 1.09002 * 109.47070 * 183.79195 * 4 3 2 34 34 H 1.08996 * 109.47273 * 186.04013 * 6 5 4 35 35 H 1.08996 * 109.47174 * 306.04585 * 6 5 4 36 36 H 0.97006 * 119.99643 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.46879 * 319.70499 * 15 5 4 38 38 H 1.08994 * 109.46984 * 79.70594 * 15 5 4 39 39 H 1.08005 * 119.46923 * 359.97438 * 17 16 15 40 40 H 1.08003 * 120.11792 * 180.27847 * 18 17 16 41 41 H 1.08000 * 120.17625 * 359.97438 * 20 19 18 42 42 H 1.08002 * 119.51196 * 180.02562 * 21 20 19 43 43 H 1.08009 * 119.51279 * 179.97438 * 22 21 20 44 44 H 1.08005 * 120.16523 * 180.02562 * 23 22 21 45 45 H 0.96704 * 114.00287 * 90.00106 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9749 0.5364 -1.2436 6 6 5.3221 -0.0297 -1.0943 7 6 5.2854 -1.1576 -0.0954 8 1 4.3543 -1.4266 0.3812 9 6 6.4405 -1.8452 0.2108 10 7 7.5743 -1.5173 -0.3692 11 14 6.3947 -3.2436 1.4484 12 1 5.4656 -4.2983 0.9695 13 1 7.7569 -3.8151 1.6003 14 1 5.9254 -2.7288 2.7599 15 6 3.9197 1.4731 -2.3738 16 6 3.8975 0.6994 -3.6668 17 6 5.0455 0.6426 -4.4525 18 6 5.0619 -0.0525 -5.6230 19 6 3.9009 -0.7154 -6.0572 20 6 3.8809 -1.4369 -7.2632 21 6 2.7388 -2.0669 -7.6519 22 6 1.5858 -2.0075 -6.8716 23 6 1.5691 -1.3186 -5.6975 24 6 2.7284 -0.6556 -5.2643 25 6 2.7494 0.0681 -4.0544 26 8 1.6363 0.1370 -3.2796 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8529 0.5859 0.8532 33 1 3.9788 2.1780 0.0673 34 1 5.6660 -0.4081 -2.0569 35 1 6.0046 0.7443 -0.7434 36 1 8.3870 -2.0014 -0.1541 37 1 3.0178 2.0807 -2.2984 38 1 4.7965 2.1201 -2.3525 39 1 5.9387 1.1544 -4.1259 40 1 5.9622 -0.0901 -6.2184 41 1 4.7670 -1.4911 -7.8782 42 1 2.7259 -2.6211 -8.5788 43 1 0.6923 -2.5160 -7.2029 44 1 0.6683 -1.2815 -5.1028 45 1 1.0590 0.8848 -3.4859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816503932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:02 Heat of formation + Delta-G solvation = -56.804464 kcal Electronic energy + Delta-G solvation = -26872.244290 eV Core-core repulsion = 23240.172822 eV Total energy + Delta-G solvation = -3632.071468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55003 -39.35828 -38.44647 -37.65020 -36.60507 -34.66634 -32.75046 -32.02635 -30.70751 -29.99580 -28.55608 -26.96202 -26.11517 -24.35545 -23.90073 -23.03300 -22.65824 -21.33459 -19.30008 -18.58518 -18.11876 -17.66437 -17.18856 -16.99205 -16.57109 -16.45797 -16.15095 -15.66975 -15.47745 -15.20023 -15.13210 -14.64546 -14.53747 -14.28133 -14.04579 -13.87745 -13.58973 -13.38385 -13.11872 -12.79566 -12.74686 -12.56873 -12.49371 -12.38193 -12.29598 -11.98384 -11.90592 -11.78334 -11.45674 -11.25301 -11.14215 -10.59744 -10.58176 -10.28200 -9.44394 -8.82539 -8.58444 -8.16786 -6.24205 -0.33715 0.09523 1.13345 1.37403 1.41333 1.49162 2.06842 2.41759 3.11209 3.15431 3.17645 3.34043 3.47763 3.77399 3.92564 4.04742 4.15838 4.20176 4.29910 4.41833 4.42989 4.45503 4.55276 4.58200 4.64914 4.69062 4.71769 4.72783 4.78430 4.90251 4.97905 5.05913 5.10119 5.19765 5.25610 5.32131 5.35767 5.37682 5.57606 5.67378 5.69695 5.74396 5.90629 6.12667 6.14017 6.42522 6.60749 6.78253 6.92804 7.01147 7.43948 8.93599 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.005072 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.509760 B = 5519.095731 C = 6790.476775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.398 6.398 3 C 0.085 3.915 4 C 0.056 3.944 5 N -0.517 5.517 6 C 0.215 3.785 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.003 3.997 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.276 1.276 13 H -0.280 1.280 14 H -0.267 1.267 15 C 0.102 3.898 16 C -0.114 4.114 17 C -0.105 4.105 18 C -0.127 4.127 19 C -0.059 4.059 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.107 4.107 24 C -0.098 4.098 25 C 0.140 3.860 26 O -0.476 6.476 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.004 0.996 35 H -0.042 1.042 36 H 0.262 0.738 37 H 0.093 0.907 38 H 0.025 0.975 39 H 0.116 0.884 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.136 0.864 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.498 6.161 -12.297 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.317 6.317 3 C 0.008 3.992 4 C -0.072 4.072 5 N -0.241 5.241 6 C 0.089 3.911 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.194 4.194 10 N -0.575 5.575 11 Si 0.786 3.214 12 H -0.201 1.201 13 H -0.205 1.205 14 H -0.192 1.192 15 C -0.025 4.025 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.145 4.145 19 C -0.060 4.060 20 C -0.137 4.137 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.125 4.125 24 C -0.098 4.098 25 C 0.094 3.906 26 O -0.286 6.286 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.022 0.978 35 H -0.024 1.024 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.134 0.866 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.170 0.830 43 H 0.167 0.833 44 H 0.154 0.846 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -14.310 5.075 -12.112 19.423 hybrid contribution 0.896 0.594 0.868 1.382 sum -13.414 5.669 -11.244 18.398 Atomic orbital electron populations 1.22754 0.80821 1.02524 1.00242 1.88101 1.20147 1.28159 1.95259 1.22450 0.92050 0.84729 0.99992 1.22083 0.94816 0.96871 0.93435 1.61942 1.26515 1.32790 1.02844 1.19307 0.84095 0.92589 0.95151 1.21422 0.94154 1.16298 1.23319 0.92704 1.25802 0.95027 1.00025 0.98575 1.70072 0.99759 1.42833 1.44787 0.85567 0.77041 0.79284 0.79500 1.20145 1.20499 1.19186 1.20893 1.00525 0.92540 0.88581 1.19928 0.94230 1.00689 0.96625 1.20789 0.97167 0.99596 0.94792 1.21179 0.98122 0.98017 0.97191 1.18270 0.93009 0.98776 0.95920 1.21296 0.99991 0.97420 0.94967 1.21233 0.92450 0.98872 1.00769 1.21202 0.99578 0.99046 0.94382 1.21101 0.97159 0.97188 0.97074 1.18654 0.95585 1.01027 0.94574 1.17892 0.87788 0.95995 0.88921 1.84947 1.32941 1.52455 1.58251 0.93638 0.93054 0.90495 0.92142 0.92401 0.92232 0.93504 0.97782 1.02407 0.92880 0.88852 0.95697 0.86565 0.83692 0.83547 0.82970 0.83290 0.84587 0.75002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.08 16 2 O -0.40 -14.49 10.63 -148.98 -1.58 -16.07 16 3 C 0.08 2.65 6.12 71.98 0.44 3.09 16 4 C 0.06 2.23 5.18 86.30 0.45 2.67 16 5 N -0.52 -23.28 4.27 -905.38 -3.87 -27.15 16 6 C 0.21 12.02 4.55 85.56 0.39 12.41 16 7 C -0.51 -31.09 8.23 25.60 0.21 -30.88 16 8 H 0.05 3.39 7.32 -2.91 -0.02 3.36 16 9 C 0.00 0.19 5.46 84.65 0.46 0.66 16 10 N -0.93 -58.39 13.29 21.45 0.28 -58.10 16 11 Si 0.96 47.26 29.54 68.60 2.03 49.29 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 15 C 0.10 3.77 4.49 85.56 0.38 4.15 16 16 C -0.11 -4.19 4.80 -20.00 -0.10 -4.29 16 17 C -0.10 -3.78 8.87 22.02 0.20 -3.59 16 18 C -0.13 -4.06 9.77 22.35 0.22 -3.84 16 19 C -0.06 -1.84 5.74 -21.30 -0.12 -1.96 16 20 C -0.12 -2.88 9.77 22.34 0.22 -2.67 16 21 C -0.12 -2.37 9.95 22.04 0.22 -2.15 16 22 C -0.12 -2.66 9.95 22.05 0.22 -2.44 16 23 C -0.11 -2.83 9.56 22.31 0.21 -2.62 16 24 C -0.10 -3.14 5.75 -21.23 -0.12 -3.27 16 25 C 0.14 4.79 6.65 22.57 0.15 4.94 16 26 O -0.48 -14.35 11.96 -91.33 -1.09 -15.44 16 27 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.55 6.72 -2.39 -0.02 1.53 16 32 H 0.06 2.77 6.58 -2.38 -0.02 2.75 16 33 H 0.05 1.68 7.99 -2.39 -0.02 1.66 16 34 H 0.00 0.25 6.87 -2.39 -0.02 0.23 16 35 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 36 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 37 H 0.09 2.82 6.31 -2.39 -0.02 2.80 16 38 H 0.02 0.93 7.78 -2.39 -0.02 0.92 16 39 H 0.12 4.16 7.97 -2.91 -0.02 4.14 16 40 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 41 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.14 3.21 7.62 -2.91 -0.02 3.18 16 45 H 0.39 7.50 9.06 -74.05 -0.67 6.83 16 Total: -1.00 -77.29 372.28 0.76 -76.53 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.32 Total: 18.65 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 4.68 Total: -27.70 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -3.58 Total: -85.25 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -2.68 Total: -31.52 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.29 0.76 -76.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816503932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.722 kcal (2) G-P(sol) polarization free energy of solvation -77.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds