Wall clock time and date at job start Tue Mar 31 2020 12:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39636 * 120.15017 * 172.76602 * 3 2 1 5 5 C 1.37946 * 119.84487 * 179.97438 * 4 3 2 6 6 C 1.38359 * 120.15143 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.84343 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47343 * 24.99870 * 7 6 5 9 9 O 1.42907 * 109.46739 * 144.99789 * 7 6 5 10 10 C 1.52996 * 109.47304 * 264.99782 * 7 6 5 11 11 N 1.46897 * 109.47403 * 180.02562 * 10 7 6 12 12 C 1.46898 * 111.00165 * 180.02562 * 11 10 7 13 13 C 1.53043 * 109.46157 * 275.06676 * 12 11 10 14 14 C 1.53192 * 109.31500 * 178.61330 * 13 12 11 15 15 N 1.46921 * 108.77337 * 54.63244 * 14 13 12 16 16 C 1.36947 * 120.62715 * 126.41438 * 15 14 13 17 17 H 1.07994 * 119.99555 * 331.82166 * 16 15 14 18 18 C 1.38808 * 119.99622 * 151.82392 * 16 15 14 19 19 N 1.31620 * 120.00551 * 343.07485 * 18 16 15 20 20 Si 1.86801 * 119.99758 * 163.08225 * 18 16 15 21 21 H 1.48501 * 109.47125 * 59.99468 * 20 18 16 22 22 H 1.48493 * 109.47279 * 179.97438 * 20 18 16 23 23 H 1.48511 * 109.46928 * 299.99709 * 20 18 16 24 24 C 1.46926 * 118.74228 * 306.39346 * 15 14 13 25 25 C 1.53043 * 109.46153 * 154.99877 * 12 11 10 26 26 C 1.38356 * 120.30667 * 0.27573 * 6 5 4 27 27 C 1.37952 * 120.15282 * 359.48821 * 26 6 5 28 28 H 1.08001 * 120.07169 * 359.95757 * 4 3 2 29 29 H 1.07998 * 119.92158 * 179.97438 * 5 4 3 30 30 H 0.96700 * 113.99827 * 60.00077 * 9 7 6 31 31 H 1.09003 * 109.46992 * 300.00303 * 10 7 6 32 32 H 1.08996 * 109.47291 * 59.99831 * 10 7 6 33 33 H 1.00897 * 110.99944 * 56.04342 * 11 10 7 34 34 H 1.08999 * 109.45988 * 35.02719 * 12 11 10 35 35 H 1.09000 * 109.49708 * 298.57068 * 13 12 11 36 36 H 1.09004 * 109.49335 * 58.65833 * 13 12 11 37 37 H 1.09004 * 109.58341 * 294.85026 * 14 13 12 38 38 H 1.09002 * 109.70120 * 174.49364 * 14 13 12 39 39 H 0.96991 * 119.99920 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.58497 * 293.81849 * 24 15 14 41 41 H 1.09004 * 109.70348 * 173.46270 * 24 15 14 42 42 H 1.08997 * 109.49470 * 301.33705 * 25 12 11 43 43 H 1.08999 * 109.49543 * 61.43669 * 25 12 11 44 44 H 1.07999 * 119.92501 * 179.72573 * 26 6 5 45 45 H 1.07998 * 120.07720 * 180.25214 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1988 -0.1520 5 6 4.6483 1.1922 -0.1506 6 6 5.3374 0.0021 0.0016 7 6 6.8444 0.0030 0.0027 8 1 7.2069 0.9820 0.3161 9 8 7.3205 -0.9939 0.9092 10 6 7.3557 -0.3031 -1.4064 11 7 8.8246 -0.3028 -1.4052 12 6 9.3523 -0.5932 -2.7450 13 6 9.4165 -2.1084 -2.9504 14 6 9.9344 -2.4070 -4.3609 15 7 11.2181 -1.7176 -4.5490 16 6 12.3274 -2.4083 -4.9587 17 1 12.4282 -3.4572 -4.7223 18 6 13.3222 -1.7600 -5.6778 19 7 13.0714 -0.6023 -6.2516 20 14 15.0168 -2.5308 -5.8312 21 1 14.9002 -3.8549 -6.4934 22 1 15.8909 -1.6469 -6.6434 23 1 15.6062 -2.7037 -4.4791 24 6 11.2889 -0.2732 -4.2898 25 6 10.7559 0.0016 -2.8802 26 6 4.6493 -1.1893 0.1475 27 6 3.2698 -1.1968 0.1528 28 1 2.7320 2.1284 -0.2708 29 1 5.1915 2.1181 -0.2685 30 1 7.0359 -1.8919 0.6912 31 1 6.9931 -1.2821 -1.7198 32 1 6.9924 0.4572 -2.0978 33 1 9.1858 -0.9546 -0.7249 34 1 8.6973 -0.1525 -3.4966 35 1 10.0907 -2.5470 -2.2148 36 1 8.4202 -2.5342 -2.8308 37 1 9.2155 -2.0483 -5.0976 38 1 10.0754 -3.4812 -4.4808 39 1 13.7664 -0.1496 -6.7543 40 1 10.6807 0.2595 -5.0208 41 1 12.3235 0.0627 -4.3611 42 1 10.7130 1.0774 -2.7107 43 1 11.4176 -0.4569 -2.1453 44 1 5.1935 -2.1153 0.2615 45 1 2.7340 -2.1270 0.2709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819033287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:03 Heat of formation + Delta-G solvation = 22.530916 kcal Electronic energy + Delta-G solvation = -25202.279448 eV Core-core repulsion = 21605.940972 eV Total energy + Delta-G solvation = -3596.338477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.35869 -38.45838 -37.50638 -36.54775 -34.78899 -32.61613 -31.91068 -31.57180 -30.22179 -29.51174 -27.56327 -24.91025 -23.66001 -23.33835 -22.18408 -21.71957 -21.34065 -19.43534 -19.26771 -17.60604 -16.89317 -16.49727 -15.78912 -15.25395 -15.05616 -14.88244 -14.54406 -14.41838 -14.28814 -13.97222 -13.77272 -13.69131 -13.44274 -13.18330 -12.99163 -12.93054 -12.79623 -12.49917 -12.26474 -12.01262 -11.64325 -11.45758 -11.35960 -11.08392 -10.78544 -10.71256 -10.54867 -10.24630 -10.22411 -9.99593 -9.73029 -9.54840 -9.50125 -9.20753 -8.48497 -8.11655 -6.67075 -5.78598 -3.21223 0.24235 0.82433 2.23880 2.46587 3.36094 3.38453 3.41893 3.44382 3.45598 3.94916 4.09313 4.30006 4.35886 4.49747 4.63661 4.75429 4.86015 4.92723 5.02427 5.19465 5.28715 5.40570 5.41300 5.49110 5.55254 5.61580 5.67210 5.71041 5.77235 5.85689 6.03074 6.08636 6.26812 6.28976 6.45605 6.57459 6.61262 6.68633 6.83610 6.92681 7.04750 7.23907 7.29747 7.38456 7.62080 7.69269 7.79735 8.45913 9.21947 9.85223 10.41948 11.29949 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031226 B = 0.002155 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.480971 B =12991.284487 C =13097.809762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.255 3.745 3 C -0.034 4.034 4 C -0.066 4.066 5 C -0.109 4.109 6 C -0.080 4.080 7 C 0.144 3.856 8 H 0.121 0.879 9 O -0.549 6.549 10 C 0.033 3.967 11 N -0.683 5.683 12 C 0.096 3.904 13 C -0.159 4.159 14 C 0.149 3.851 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.170 3.830 25 C -0.125 4.125 26 C -0.113 4.113 27 C -0.065 4.065 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.371 0.629 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.344 0.656 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.015 0.985 38 H 0.052 0.948 39 H 0.254 0.746 40 H 0.016 0.984 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.132 0.868 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.745 1.904 13.875 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.060 4.060 3 C -0.037 4.037 4 C -0.087 4.087 5 C -0.127 4.127 6 C -0.082 4.082 7 C 0.085 3.915 8 H 0.138 0.862 9 O -0.354 6.354 10 C -0.097 4.097 11 N -0.314 5.314 12 C -0.013 4.013 13 C -0.200 4.200 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.081 0.919 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.044 3.956 25 C -0.165 4.165 26 C -0.131 4.131 27 C -0.086 4.086 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.219 0.781 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.150 0.850 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.068 3.210 13.966 23.061 hybrid contribution 0.716 -1.795 -0.568 2.014 sum -17.352 1.415 13.398 21.969 Atomic orbital electron populations 1.81277 1.12091 1.07210 1.08824 1.25741 0.92689 0.93863 0.93725 1.16016 0.84276 0.95336 1.08119 1.21197 0.94245 0.96734 0.96501 1.20989 0.93482 0.98275 0.99921 1.20917 0.97291 0.93662 0.96333 1.21044 0.86731 0.94003 0.89741 0.86170 1.86694 1.76493 1.18922 1.53299 1.22595 0.90449 1.00713 0.95939 1.60646 1.04929 1.57492 1.08303 1.21543 0.97248 0.94059 0.88438 1.22687 0.99140 0.96916 1.01254 1.20805 0.88612 0.96403 0.91978 1.44058 1.04848 1.04769 1.77799 1.19127 0.96186 0.94774 1.28218 0.91859 1.25046 0.99714 0.97825 0.97044 1.70017 1.32496 1.17167 1.35019 0.86372 0.84353 0.78419 0.77620 1.20940 1.21628 1.21009 1.20802 1.01367 0.84074 0.89342 1.22178 0.94137 0.99095 1.01070 1.20835 0.93602 0.98089 1.00618 1.21141 0.94116 0.96756 0.96571 0.84753 0.84388 0.78103 0.94919 0.90063 0.83725 0.91429 0.92176 0.93824 0.96714 0.92984 0.93570 0.96573 0.89371 0.92702 0.92793 0.85024 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.69 18.54 41.84 0.78 -3.92 16 2 C 0.26 2.23 15.33 -22.47 -0.34 1.88 16 3 C -0.03 -0.23 5.73 -106.93 -0.61 -0.84 16 4 C -0.07 -0.38 9.76 -39.17 -0.38 -0.77 16 5 C -0.11 -0.64 9.66 -39.64 -0.38 -1.02 16 6 C -0.08 -0.52 5.01 -104.53 -0.52 -1.05 16 7 C 0.14 1.12 3.48 -27.89 -0.10 1.02 16 8 H 0.12 0.99 8.05 -51.93 -0.42 0.57 16 9 O -0.55 -4.56 12.47 -35.23 -0.44 -5.00 16 10 C 0.03 0.32 5.17 -3.83 -0.02 0.30 16 11 N -0.68 -8.60 6.25 -106.68 -0.67 -9.27 16 12 C 0.10 1.51 2.43 -67.67 -0.16 1.35 16 13 C -0.16 -2.57 5.33 -26.61 -0.14 -2.71 16 14 C 0.15 3.04 6.52 -3.71 -0.02 3.01 16 15 N -0.59 -14.57 2.99 -172.32 -0.52 -15.09 16 16 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 17 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 20 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 25 C -0.12 -2.34 5.69 -26.61 -0.15 -2.49 16 26 C -0.11 -0.64 9.31 -39.64 -0.37 -1.01 16 27 C -0.07 -0.38 9.76 -39.17 -0.38 -0.76 16 28 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.37 1.93 7.38 45.56 0.34 2.27 16 31 H 0.03 0.30 7.41 -51.93 -0.38 -0.08 16 32 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 33 H 0.34 4.32 7.87 -39.29 -0.31 4.01 16 34 H 0.07 1.11 7.80 -51.93 -0.40 0.70 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.60 7.42 -51.93 -0.39 0.21 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 2.33 6.07 -51.93 -0.31 2.02 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.13 0.50 6.60 -52.49 -0.35 0.15 16 45 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -31.39 370.98 -9.50 -40.88 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.99 Total: 1.85 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.85 Total: -6.18 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.21 Total: -53.64 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.44 Total: -5.00 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.39 -9.50 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819033287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.414 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds