Wall clock time and date at job start Tue Mar 31 2020 12:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39636 * 120.15017 * 172.76602 * 3 2 1 5 5 C 1.37946 * 119.84487 * 179.97438 * 4 3 2 6 6 C 1.38359 * 120.15143 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.84343 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47343 * 24.99870 * 7 6 5 9 9 O 1.42907 * 109.46739 * 144.99789 * 7 6 5 10 10 C 1.52996 * 109.47304 * 264.99782 * 7 6 5 11 11 N 1.46897 * 109.47403 * 180.02562 * 10 7 6 12 12 C 1.46898 * 111.00165 * 180.02562 * 11 10 7 13 13 C 1.53043 * 109.46157 * 275.06676 * 12 11 10 14 14 C 1.53192 * 109.31500 * 178.61330 * 13 12 11 15 15 N 1.46921 * 108.77337 * 54.63244 * 14 13 12 16 16 C 1.36947 * 120.62715 * 126.41438 * 15 14 13 17 17 H 1.07994 * 119.99555 * 331.82166 * 16 15 14 18 18 C 1.38808 * 119.99622 * 151.82392 * 16 15 14 19 19 N 1.31620 * 120.00551 * 343.07485 * 18 16 15 20 20 Si 1.86801 * 119.99758 * 163.08225 * 18 16 15 21 21 H 1.48501 * 109.47125 * 59.99468 * 20 18 16 22 22 H 1.48493 * 109.47279 * 179.97438 * 20 18 16 23 23 H 1.48511 * 109.46928 * 299.99709 * 20 18 16 24 24 C 1.46926 * 118.74228 * 306.39346 * 15 14 13 25 25 C 1.53043 * 109.46153 * 154.99877 * 12 11 10 26 26 C 1.38356 * 120.30667 * 0.27573 * 6 5 4 27 27 C 1.37952 * 120.15282 * 359.48821 * 26 6 5 28 28 H 1.08001 * 120.07169 * 359.95757 * 4 3 2 29 29 H 1.07998 * 119.92158 * 179.97438 * 5 4 3 30 30 H 0.96700 * 113.99827 * 60.00077 * 9 7 6 31 31 H 1.09003 * 109.46992 * 300.00303 * 10 7 6 32 32 H 1.08996 * 109.47291 * 59.99831 * 10 7 6 33 33 H 1.00897 * 110.99944 * 56.04342 * 11 10 7 34 34 H 1.08999 * 109.45988 * 35.02719 * 12 11 10 35 35 H 1.09000 * 109.49708 * 298.57068 * 13 12 11 36 36 H 1.09004 * 109.49335 * 58.65833 * 13 12 11 37 37 H 1.09004 * 109.58341 * 294.85026 * 14 13 12 38 38 H 1.09002 * 109.70120 * 174.49364 * 14 13 12 39 39 H 0.96991 * 119.99920 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.58497 * 293.81849 * 24 15 14 41 41 H 1.09004 * 109.70348 * 173.46270 * 24 15 14 42 42 H 1.08997 * 109.49470 * 301.33705 * 25 12 11 43 43 H 1.08999 * 109.49543 * 61.43669 * 25 12 11 44 44 H 1.07999 * 119.92501 * 179.72573 * 26 6 5 45 45 H 1.07998 * 120.07720 * 180.25214 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1988 -0.1520 5 6 4.6483 1.1922 -0.1506 6 6 5.3374 0.0021 0.0016 7 6 6.8444 0.0030 0.0027 8 1 7.2069 0.9820 0.3161 9 8 7.3205 -0.9939 0.9092 10 6 7.3557 -0.3031 -1.4064 11 7 8.8246 -0.3028 -1.4052 12 6 9.3523 -0.5932 -2.7450 13 6 9.4165 -2.1084 -2.9504 14 6 9.9344 -2.4070 -4.3609 15 7 11.2181 -1.7176 -4.5490 16 6 12.3274 -2.4083 -4.9587 17 1 12.4282 -3.4572 -4.7223 18 6 13.3222 -1.7600 -5.6778 19 7 13.0714 -0.6023 -6.2516 20 14 15.0168 -2.5308 -5.8312 21 1 14.9002 -3.8549 -6.4934 22 1 15.8909 -1.6469 -6.6434 23 1 15.6062 -2.7037 -4.4791 24 6 11.2889 -0.2732 -4.2898 25 6 10.7559 0.0016 -2.8802 26 6 4.6493 -1.1893 0.1475 27 6 3.2698 -1.1968 0.1528 28 1 2.7320 2.1284 -0.2708 29 1 5.1915 2.1181 -0.2685 30 1 7.0359 -1.8919 0.6912 31 1 6.9931 -1.2821 -1.7198 32 1 6.9924 0.4572 -2.0978 33 1 9.1858 -0.9546 -0.7249 34 1 8.6973 -0.1525 -3.4966 35 1 10.0907 -2.5470 -2.2148 36 1 8.4202 -2.5342 -2.8308 37 1 9.2155 -2.0483 -5.0976 38 1 10.0754 -3.4812 -4.4808 39 1 13.7664 -0.1496 -6.7543 40 1 10.6807 0.2595 -5.0208 41 1 12.3235 0.0627 -4.3611 42 1 10.7130 1.0774 -2.7107 43 1 11.4176 -0.4569 -2.1453 44 1 5.1935 -2.1153 0.2615 45 1 2.7340 -2.1270 0.2709 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819033287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:02 Heat of formation + Delta-G solvation = 1.871032 kcal Electronic energy + Delta-G solvation = -25203.175328 eV Core-core repulsion = 21605.940972 eV Total energy + Delta-G solvation = -3597.234356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.86952 -39.64286 -38.43760 -37.28620 -36.16572 -33.91634 -32.91469 -31.99107 -31.76372 -31.03273 -28.57161 -26.47617 -24.67005 -23.78658 -23.68766 -22.86177 -22.39680 -20.83295 -19.92003 -18.76532 -18.16633 -17.09529 -16.94253 -16.56242 -15.90010 -15.73279 -15.51154 -15.43431 -15.27902 -15.10451 -14.88388 -14.73148 -14.52180 -14.37385 -14.10934 -13.88752 -13.77677 -13.45867 -13.19958 -13.01559 -12.96040 -12.87017 -12.54194 -12.45171 -12.14032 -12.00136 -11.91782 -11.90433 -11.76807 -11.38647 -11.32146 -10.90293 -10.51603 -9.95720 -9.75388 -9.18252 -8.65774 -7.85666 -5.31003 -0.26247 0.41869 1.47824 1.50436 1.57082 1.57615 1.87841 2.52842 2.81858 2.85290 3.16220 3.30886 3.58009 3.72461 3.88014 3.91646 3.97226 4.01627 4.14528 4.21103 4.31789 4.40624 4.45337 4.52913 4.59175 4.75696 4.77082 4.81438 4.92681 4.95524 5.03542 5.07338 5.14544 5.19925 5.24090 5.31722 5.34013 5.38627 5.55638 5.58349 5.67392 5.78006 5.84624 6.18821 6.40462 6.41772 6.60294 6.84880 7.17212 7.89093 8.40198 9.20514 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031226 B = 0.002155 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.480971 B =12991.284487 C =13097.809762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.279 3.721 3 C -0.047 4.047 4 C -0.065 4.065 5 C -0.112 4.112 6 C -0.084 4.084 7 C 0.156 3.844 8 H 0.115 0.885 9 O -0.562 6.562 10 C 0.034 3.966 11 N -0.682 5.682 12 C 0.109 3.891 13 C -0.143 4.143 14 C 0.143 3.857 15 N -0.611 5.611 16 C -0.263 4.263 17 H 0.065 0.935 18 C -0.052 4.052 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.278 1.278 24 C 0.177 3.823 25 C -0.112 4.112 26 C -0.114 4.114 27 C -0.064 4.064 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.385 0.615 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.347 0.653 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.012 0.988 38 H 0.051 0.949 39 H 0.250 0.750 40 H -0.006 1.006 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.153 0.847 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.392 1.040 15.381 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.035 4.035 3 C -0.050 4.050 4 C -0.086 4.086 5 C -0.130 4.130 6 C -0.086 4.086 7 C 0.097 3.903 8 H 0.133 0.867 9 O -0.370 6.370 10 C -0.095 4.095 11 N -0.313 5.313 12 C -0.001 4.001 13 C -0.184 4.184 14 C 0.017 3.983 15 N -0.335 5.335 16 C -0.394 4.394 17 H 0.083 0.917 18 C -0.248 4.248 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.204 1.204 24 C 0.051 3.949 25 C -0.151 4.151 26 C -0.132 4.132 27 C -0.085 4.085 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.235 0.765 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.167 0.833 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.030 0.970 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.013 0.987 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.171 0.829 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.749 2.320 15.499 24.436 hybrid contribution 0.895 -1.542 -1.032 2.060 sum -17.854 0.779 14.467 22.992 Atomic orbital electron populations 1.81296 1.13565 1.08864 1.10868 1.26027 0.92919 0.92366 0.92216 1.16145 0.83147 0.96322 1.09414 1.21359 0.94372 0.96996 0.95852 1.21178 0.93502 0.98808 0.99527 1.20877 0.96546 0.94303 0.96871 1.20825 0.87358 0.93767 0.88359 0.86707 1.86674 1.76826 1.19987 1.53473 1.22661 0.88176 1.01327 0.97338 1.60492 1.07064 1.57493 1.06250 1.21239 0.95224 0.93380 0.90277 1.22511 1.00605 0.97371 0.97881 1.20994 0.86809 0.95936 0.94603 1.44326 1.05949 1.05164 1.78012 1.19466 0.97298 0.95075 1.27512 0.91716 1.25808 1.03113 0.98529 0.97301 1.70174 1.33187 1.18588 1.36136 0.85358 0.80013 0.77628 0.77549 1.20114 1.22074 1.20431 1.20591 0.99037 0.83584 0.91714 1.21936 0.95995 0.99896 0.97315 1.21070 0.93555 0.98689 0.99908 1.21331 0.94338 0.96963 0.95829 0.83468 0.83039 0.76501 0.93844 0.90155 0.83339 0.91774 0.92534 0.90363 0.97045 0.93075 0.94127 0.98749 0.93054 0.91793 0.93567 0.82948 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.43 18.54 19.00 0.35 -10.07 16 2 C 0.28 4.60 15.33 88.33 1.35 5.96 16 3 C -0.05 -0.54 5.73 -21.36 -0.12 -0.66 16 4 C -0.07 -0.62 9.76 22.54 0.22 -0.40 16 5 C -0.11 -1.02 9.66 22.23 0.21 -0.81 16 6 C -0.08 -0.84 5.01 -19.81 -0.10 -0.94 16 7 C 0.16 1.94 3.48 29.85 0.10 2.04 16 8 H 0.12 1.57 8.05 -2.39 -0.02 1.56 16 9 O -0.56 -7.48 12.47 -148.98 -1.86 -9.34 16 10 C 0.03 0.54 5.17 86.30 0.45 0.99 16 11 N -0.68 -15.24 6.25 -491.44 -3.07 -18.31 16 12 C 0.11 3.19 2.43 44.94 0.11 3.30 16 13 C -0.14 -4.27 5.33 30.67 0.16 -4.10 16 14 C 0.14 5.67 6.52 86.36 0.56 6.23 16 15 N -0.61 -30.35 2.99 -699.11 -2.09 -32.44 16 16 C -0.26 -14.44 9.58 84.03 0.81 -13.64 16 17 H 0.07 3.45 7.88 -2.91 -0.02 3.43 16 18 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 19 N -0.93 -55.43 11.19 21.65 0.24 -55.19 16 20 Si 0.97 44.78 29.59 68.60 2.03 46.80 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 C 0.18 8.50 5.30 86.36 0.46 8.95 16 25 C -0.11 -4.12 5.69 30.67 0.17 -3.95 16 26 C -0.11 -0.92 9.31 22.23 0.21 -0.71 16 27 C -0.06 -0.57 9.76 22.54 0.22 -0.35 16 28 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 29 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 30 H 0.38 2.53 7.38 -74.06 -0.55 1.98 16 31 H 0.04 0.62 7.41 -2.39 -0.02 0.60 16 32 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 33 H 0.35 7.62 7.87 -89.70 -0.71 6.91 16 34 H 0.06 1.97 7.80 -2.39 -0.02 1.95 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.83 7.42 -2.39 -0.02 1.81 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 39 H 0.25 14.37 8.31 -92.72 -0.77 13.60 16 40 H -0.01 -0.29 8.14 -2.39 -0.02 -0.30 16 41 H 0.05 2.82 6.07 -2.38 -0.01 2.81 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.15 0.53 6.60 -2.91 -0.02 0.51 16 45 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -69.23 370.98 0.60 -68.63 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -0.24 Total: 10.51 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.23 Total: -0.59 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -4.57 Total: -116.02 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -1.86 Total: -9.34 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.23 0.60 -68.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819033287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.499 kcal (2) G-P(sol) polarization free energy of solvation -69.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds