Wall clock time and date at job start Tue Mar 31 2020 11:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35956 * 117.00318 * 2 1 4 4 C 1.38311 * 120.06479 * 0.02562 * 3 2 1 5 5 C 1.38697 * 120.62320 * 180.22979 * 4 3 2 6 6 C 1.37737 * 120.32245 * 359.48391 * 5 4 3 7 7 C 1.39511 * 119.69838 * 0.50546 * 6 5 4 8 8 C 1.46790 * 134.29575 * 179.74983 * 7 6 5 9 9 C 1.34000 * 106.18932 * 180.02562 * 8 7 6 10 10 C 1.50709 * 124.93262 * 180.02562 * 9 8 7 11 11 N 1.46895 * 109.47043 * 89.99628 * 10 9 8 12 12 C 1.46842 * 111.00296 * 66.04808 * 11 10 9 13 13 C 1.53037 * 109.52819 * 185.83898 * 12 11 10 14 14 C 1.53129 * 109.27540 * 300.82029 * 13 12 11 15 15 C 1.53123 * 109.16015 * 57.65082 * 14 13 12 16 16 H 1.09001 * 109.50052 * 62.32390 * 15 14 13 17 17 C 1.50697 * 109.50293 * 182.40527 * 15 14 13 18 18 H 1.08000 * 120.00174 * 120.00321 * 17 15 14 19 19 C 1.37885 * 119.99690 * 300.00463 * 17 15 14 20 20 N 1.31508 * 119.99947 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99774 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47105 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47355 * 119.99759 * 21 19 17 24 24 H 1.48502 * 109.46682 * 240.00009 * 21 19 17 25 25 C 1.46851 * 110.99703 * 190.25488 * 11 10 9 26 26 O 1.34418 * 110.13490 * 359.97438 * 9 8 7 27 27 C 1.34887 * 110.87598 * 359.97438 * 26 9 8 28 28 H 1.09001 * 109.46998 * 299.99292 * 1 2 3 29 29 H 1.08999 * 109.47223 * 59.99579 * 1 2 3 30 30 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.68492 * 359.94399 * 4 3 2 32 32 H 1.07992 * 119.83559 * 179.71598 * 5 4 3 33 33 H 1.07996 * 120.15016 * 180.25782 * 6 5 4 34 34 H 1.07996 * 126.90181 * 0.03641 * 8 7 6 35 35 H 1.08998 * 109.46764 * 209.99664 * 10 9 8 36 36 H 1.09000 * 109.46962 * 329.99703 * 10 9 8 37 37 H 1.09003 * 109.46242 * 305.85443 * 12 11 10 38 38 H 1.09006 * 109.46442 * 65.82027 * 12 11 10 39 39 H 1.08999 * 109.50363 * 60.75622 * 13 12 11 40 40 H 1.08993 * 109.50525 * 180.88347 * 13 12 11 41 41 H 1.08989 * 109.52043 * 177.56033 * 14 13 12 42 42 H 1.09001 * 109.52162 * 297.68595 * 14 13 12 43 43 H 0.97006 * 119.99623 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.46600 * 294.17944 * 25 11 10 45 45 H 1.08998 * 109.46147 * 54.14758 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3722 0.0005 5 6 1.9120 3.6140 -0.0042 6 6 3.2862 3.7072 0.0011 7 6 4.0578 2.5449 0.0007 8 6 5.5001 2.2719 0.0007 9 6 5.6278 0.9380 -0.0004 10 6 6.9400 0.1968 -0.0003 11 7 7.3656 -0.0452 1.3847 12 6 6.4449 -0.9647 2.0651 13 6 6.8340 -1.0793 3.5408 14 6 8.2716 -1.5961 3.6459 15 6 9.2037 -0.6464 2.8882 16 1 9.1717 0.3403 3.3502 17 6 10.6125 -1.1793 2.9366 18 1 11.1313 -1.4183 2.0201 19 6 11.2391 -1.3618 4.1513 20 7 10.6075 -1.0704 5.2673 21 14 12.9857 -2.0217 4.2113 22 1 13.4693 -2.2686 2.8291 23 1 13.8677 -1.0282 4.8747 24 1 13.0082 -3.2934 4.9778 25 6 8.7458 -0.5445 1.4315 26 8 4.4157 0.3571 -0.0005 27 6 3.4375 1.2859 0.0011 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2160 2.3110 0.0000 32 1 1.3125 4.5123 -0.0084 33 1 3.7642 4.6756 0.0016 34 1 6.2978 2.9999 0.0016 35 1 6.8189 -0.7563 -0.5150 36 1 7.6944 0.7935 -0.5132 37 1 5.4268 -0.5835 1.9866 38 1 6.5016 -1.9477 1.5973 39 1 6.7643 -0.0992 4.0126 40 1 6.1601 -1.7740 4.0420 41 1 8.5678 -1.6381 4.6939 42 1 8.3330 -2.5931 3.2097 43 1 11.0482 -1.1992 6.1218 44 1 8.7917 -1.5293 0.9666 45 1 9.3988 0.1420 0.8928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826862211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:39 Heat of formation + Delta-G solvation = -8.102720 kcal Electronic energy + Delta-G solvation = -26018.046002 eV Core-core repulsion = 22388.086401 eV Total energy + Delta-G solvation = -3629.959602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.45605 -39.66021 -38.19595 -36.95996 -34.11689 -32.57007 -31.69359 -30.39756 -29.90175 -29.29176 -27.61508 -25.83389 -24.94695 -23.08306 -22.28808 -21.60027 -21.45204 -20.53571 -18.62202 -18.11162 -17.55897 -16.65563 -16.38951 -16.13194 -15.65100 -15.31712 -15.08938 -14.75485 -14.41147 -14.23706 -13.63311 -13.39391 -13.26129 -12.88847 -12.76480 -12.52709 -12.48704 -12.31239 -11.92371 -11.90320 -11.57578 -11.49423 -11.42997 -11.23969 -10.96151 -10.69267 -10.64602 -10.08150 -9.83631 -9.77486 -9.47761 -9.09751 -8.69894 -8.55237 -8.30495 -7.90801 -7.75499 -5.96976 -4.03370 0.85776 1.24124 2.36947 2.67082 3.00807 3.30465 3.38650 3.41953 3.58660 4.31597 4.42934 4.58971 4.59804 4.72213 4.84735 4.87268 5.02911 5.14540 5.18477 5.21053 5.33226 5.35519 5.45549 5.58866 5.73351 5.76537 5.85858 5.96393 6.08398 6.11473 6.25828 6.29473 6.36113 6.37107 6.50491 6.55769 6.73188 6.75567 6.89591 6.94341 7.21465 7.32783 7.37251 7.59323 7.70292 7.77768 8.07828 8.17911 8.47334 9.00788 9.60998 11.08971 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.002715 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.421220 B =10309.601461 C =10698.087770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.198 4.198 5 C -0.099 4.099 6 C -0.111 4.111 7 C -0.086 4.086 8 C -0.201 4.201 9 C 0.065 3.935 10 C 0.123 3.877 11 N -0.533 5.533 12 C 0.061 3.939 13 C -0.116 4.116 14 C -0.111 4.111 15 C 0.055 3.945 16 H 0.036 0.964 17 C -0.514 4.514 18 H 0.054 0.946 19 C 0.063 3.937 20 N -0.887 5.887 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.068 3.932 26 O -0.184 6.184 27 C 0.024 3.976 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.162 0.838 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.030 0.970 43 H 0.259 0.741 44 H 0.023 0.977 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.327 6.734 -11.518 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.099 3.901 4 C -0.217 4.217 5 C -0.117 4.117 6 C -0.129 4.129 7 C -0.087 4.087 8 C -0.221 4.221 9 C 0.017 3.983 10 C -0.004 4.004 11 N -0.258 5.258 12 C -0.067 4.067 13 C -0.154 4.154 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.054 0.946 17 C -0.553 4.553 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.058 4.058 26 O -0.085 6.085 27 C -0.024 4.024 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.179 0.821 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.270 6.673 -11.077 23.207 hybrid contribution 0.639 -0.897 -0.274 1.134 sum -18.631 5.777 -11.350 22.568 Atomic orbital electron populations 1.23079 0.78206 1.04122 1.01341 1.86172 1.21464 1.26291 1.88792 1.17720 0.86770 0.85441 1.00170 1.20867 0.99651 0.91138 1.10083 1.20729 0.94128 0.96823 1.00036 1.20435 0.92969 0.96902 1.02623 1.19799 0.93420 0.92644 1.02808 1.22187 0.93925 0.95188 1.10808 1.22463 0.84761 0.92344 0.98739 1.20716 0.88264 0.98672 0.92791 1.62089 1.04227 1.48099 1.11398 1.22098 0.95124 0.93303 0.96153 1.21669 0.99257 1.00903 0.93571 1.21668 0.91085 0.97597 1.04561 1.18671 0.93312 0.96358 0.87989 0.94633 1.21167 0.98366 1.43386 0.92402 0.92725 1.24938 0.97707 0.95462 0.95757 1.69904 1.36792 1.48540 0.97371 0.86569 0.85002 0.78582 0.78015 1.19852 1.21049 1.21122 1.22368 0.85099 0.96530 1.01840 1.84046 1.13329 1.35216 1.75892 1.18682 0.87496 0.87562 1.08642 0.92478 0.92586 0.88120 0.84576 0.85226 0.85298 0.82085 0.93247 0.87450 0.92233 0.95549 0.92103 0.93457 0.89028 0.95093 0.93098 0.95852 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -4.01 10.50 -19.60 -0.21 -4.21 16 3 C 0.14 1.93 6.70 -39.15 -0.26 1.66 16 4 C -0.20 -2.05 9.03 -39.38 -0.36 -2.40 16 5 C -0.10 -0.97 10.03 -39.59 -0.40 -1.36 16 6 C -0.11 -1.26 10.10 -39.29 -0.40 -1.66 16 7 C -0.09 -1.21 6.39 -105.17 -0.67 -1.89 16 8 C -0.20 -2.87 11.01 -37.62 -0.41 -3.29 16 9 C 0.07 1.02 5.82 -35.79 -0.21 0.81 16 10 C 0.12 1.88 5.47 -4.97 -0.03 1.85 16 11 N -0.53 -9.94 4.65 -236.11 -1.10 -11.03 16 12 C 0.06 1.15 5.31 -3.84 -0.02 1.13 16 13 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 14 C -0.11 -2.66 5.02 -26.60 -0.13 -2.79 16 15 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 16 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.51 -13.94 8.56 -34.44 -0.29 -14.24 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -25.28 11.35 55.43 0.63 -24.65 16 21 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 C 0.07 1.40 4.68 -3.83 -0.02 1.39 16 26 O -0.18 -3.09 9.77 3.77 0.04 -3.05 16 27 C 0.02 0.37 7.35 -38.38 -0.28 0.09 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.14 0.98 6.26 -52.49 -0.33 0.66 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 36 H 0.11 1.41 7.98 -51.93 -0.41 0.99 16 37 H 0.06 1.11 6.49 -51.93 -0.34 0.77 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 2.44 6.15 -51.94 -0.32 2.12 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 1.25 8.01 -51.93 -0.42 0.83 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -30.80 361.61 -9.97 -40.77 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.80 Total: -0.16 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.96 Total: -19.24 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.47 Total: -35.69 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.17 Total: -7.26 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.80 -9.97 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.667 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds