Wall clock time and date at job start Tue Mar 31 2020 11:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35956 * 117.00318 * 2 1 4 4 C 1.38311 * 120.06479 * 0.02562 * 3 2 1 5 5 C 1.38697 * 120.62320 * 180.22979 * 4 3 2 6 6 C 1.37737 * 120.32245 * 359.48391 * 5 4 3 7 7 C 1.39511 * 119.69838 * 0.50546 * 6 5 4 8 8 C 1.46790 * 134.29575 * 179.74983 * 7 6 5 9 9 C 1.34000 * 106.18932 * 180.02562 * 8 7 6 10 10 C 1.50709 * 124.93262 * 180.02562 * 9 8 7 11 11 N 1.46895 * 109.47043 * 89.99628 * 10 9 8 12 12 C 1.46842 * 111.00296 * 66.04808 * 11 10 9 13 13 C 1.53037 * 109.52819 * 185.83898 * 12 11 10 14 14 C 1.53129 * 109.27540 * 300.82029 * 13 12 11 15 15 C 1.53123 * 109.16015 * 57.65082 * 14 13 12 16 16 H 1.09001 * 109.50052 * 62.32390 * 15 14 13 17 17 C 1.50697 * 109.50293 * 182.40527 * 15 14 13 18 18 H 1.08000 * 120.00174 * 120.00321 * 17 15 14 19 19 C 1.37885 * 119.99690 * 300.00463 * 17 15 14 20 20 N 1.31508 * 119.99947 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99774 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47105 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47355 * 119.99759 * 21 19 17 24 24 H 1.48502 * 109.46682 * 240.00009 * 21 19 17 25 25 C 1.46851 * 110.99703 * 190.25488 * 11 10 9 26 26 O 1.34418 * 110.13490 * 359.97438 * 9 8 7 27 27 C 1.34887 * 110.87598 * 359.97438 * 26 9 8 28 28 H 1.09001 * 109.46998 * 299.99292 * 1 2 3 29 29 H 1.08999 * 109.47223 * 59.99579 * 1 2 3 30 30 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.68492 * 359.94399 * 4 3 2 32 32 H 1.07992 * 119.83559 * 179.71598 * 5 4 3 33 33 H 1.07996 * 120.15016 * 180.25782 * 6 5 4 34 34 H 1.07996 * 126.90181 * 0.03641 * 8 7 6 35 35 H 1.08998 * 109.46764 * 209.99664 * 10 9 8 36 36 H 1.09000 * 109.46962 * 329.99703 * 10 9 8 37 37 H 1.09003 * 109.46242 * 305.85443 * 12 11 10 38 38 H 1.09006 * 109.46442 * 65.82027 * 12 11 10 39 39 H 1.08999 * 109.50363 * 60.75622 * 13 12 11 40 40 H 1.08993 * 109.50525 * 180.88347 * 13 12 11 41 41 H 1.08989 * 109.52043 * 177.56033 * 14 13 12 42 42 H 1.09001 * 109.52162 * 297.68595 * 14 13 12 43 43 H 0.97006 * 119.99623 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.46600 * 294.17944 * 25 11 10 45 45 H 1.08998 * 109.46147 * 54.14758 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3722 0.0005 5 6 1.9120 3.6140 -0.0042 6 6 3.2862 3.7072 0.0011 7 6 4.0578 2.5449 0.0007 8 6 5.5001 2.2719 0.0007 9 6 5.6278 0.9380 -0.0004 10 6 6.9400 0.1968 -0.0003 11 7 7.3656 -0.0452 1.3847 12 6 6.4449 -0.9647 2.0651 13 6 6.8340 -1.0793 3.5408 14 6 8.2716 -1.5961 3.6459 15 6 9.2037 -0.6464 2.8882 16 1 9.1717 0.3403 3.3502 17 6 10.6125 -1.1793 2.9366 18 1 11.1313 -1.4183 2.0201 19 6 11.2391 -1.3618 4.1513 20 7 10.6075 -1.0704 5.2673 21 14 12.9857 -2.0217 4.2113 22 1 13.4693 -2.2686 2.8291 23 1 13.8677 -1.0282 4.8747 24 1 13.0082 -3.2934 4.9778 25 6 8.7458 -0.5445 1.4315 26 8 4.4157 0.3571 -0.0005 27 6 3.4375 1.2859 0.0011 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2160 2.3110 0.0000 32 1 1.3125 4.5123 -0.0084 33 1 3.7642 4.6756 0.0016 34 1 6.2978 2.9999 0.0016 35 1 6.8189 -0.7563 -0.5150 36 1 7.6944 0.7935 -0.5132 37 1 5.4268 -0.5835 1.9866 38 1 6.5016 -1.9477 1.5973 39 1 6.7643 -0.0992 4.0126 40 1 6.1601 -1.7740 4.0420 41 1 8.5678 -1.6381 4.6939 42 1 8.3330 -2.5931 3.2097 43 1 11.0482 -1.1992 6.1218 44 1 8.7917 -1.5293 0.9666 45 1 9.3988 0.1420 0.8928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826862211.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:38 Heat of formation + Delta-G solvation = -25.944820 kcal Electronic energy + Delta-G solvation = -26018.819694 eV Core-core repulsion = 22388.086401 eV Total energy + Delta-G solvation = -3630.733293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.48359 -40.52928 -39.77975 -37.83666 -35.84401 -34.08902 -33.05090 -31.78474 -31.23336 -30.41568 -28.35162 -27.01136 -26.92640 -24.16068 -23.71515 -23.23642 -22.40538 -21.76022 -20.40682 -19.01558 -18.51600 -18.41883 -17.59039 -17.24096 -16.74828 -16.50938 -16.17161 -16.04028 -15.91014 -15.57800 -15.02872 -14.80968 -14.46875 -14.29238 -14.14561 -14.04435 -13.54207 -13.44547 -13.24919 -13.13323 -12.87708 -12.79724 -12.59032 -12.47554 -12.30375 -12.21988 -12.17819 -11.86301 -11.75529 -11.41435 -11.00087 -10.68558 -10.66322 -10.38374 -9.56905 -9.26131 -8.80444 -8.06508 -6.20519 -0.08381 0.34054 1.30809 1.42071 1.44029 1.55090 1.67435 2.26019 2.44467 2.69919 3.08081 3.20990 3.35958 3.82151 3.89725 4.02568 4.08248 4.15554 4.18711 4.28602 4.34634 4.39335 4.39857 4.44051 4.46034 4.57137 4.60180 4.68587 4.71713 4.79598 4.84642 4.94168 5.02923 5.14436 5.14591 5.19204 5.33333 5.40118 5.48221 5.49041 5.64876 5.70717 5.90910 5.97516 6.08518 6.16099 6.18167 6.42885 6.44267 6.92239 7.47499 8.98549 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.002715 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.421220 B =10309.601461 C =10698.087770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.344 6.344 3 C 0.123 3.877 4 C -0.187 4.187 5 C -0.090 4.090 6 C -0.118 4.118 7 C -0.106 4.106 8 C -0.197 4.197 9 C 0.041 3.959 10 C 0.128 3.872 11 N -0.542 5.542 12 C 0.070 3.930 13 C -0.109 4.109 14 C -0.103 4.103 15 C 0.053 3.947 16 H -0.001 1.001 17 C -0.532 4.532 18 H 0.056 0.944 19 C 0.012 3.988 20 N -0.917 5.917 21 Si 0.955 3.045 22 H -0.265 1.265 23 H -0.281 1.281 24 H -0.283 1.283 25 C 0.081 3.919 26 O -0.208 6.208 27 C -0.013 4.013 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.171 0.829 32 H 0.170 0.830 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.055 0.945 36 H 0.130 0.870 37 H 0.064 0.936 38 H 0.029 0.971 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.260 0.740 44 H 0.023 0.977 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.914 7.943 -12.828 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.258 6.258 3 C 0.077 3.923 4 C -0.205 4.205 5 C -0.108 4.108 6 C -0.136 4.136 7 C -0.107 4.107 8 C -0.217 4.217 9 C -0.007 4.007 10 C 0.001 3.999 11 N -0.267 5.267 12 C -0.057 4.057 13 C -0.146 4.146 14 C -0.141 4.141 15 C 0.034 3.966 16 H 0.017 0.983 17 C -0.571 4.571 18 H 0.074 0.926 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.781 3.219 22 H -0.189 1.189 23 H -0.207 1.207 24 H -0.209 1.209 25 C -0.045 4.045 26 O -0.111 6.111 27 C -0.060 4.060 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.188 0.812 32 H 0.187 0.813 33 H 0.169 0.831 34 H 0.195 0.805 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.873 7.889 -12.404 25.530 hybrid contribution 0.956 -1.194 0.129 1.535 sum -19.917 6.695 -12.275 24.335 Atomic orbital electron populations 1.23411 0.75707 1.05697 1.02840 1.86128 1.24172 1.26586 1.88949 1.18078 0.86435 0.86668 1.01082 1.21353 1.01217 0.90298 1.07647 1.21246 0.93816 0.98066 0.97667 1.20833 0.93812 0.96912 1.02073 1.20093 0.93398 0.93357 1.03889 1.22495 0.94804 0.95103 1.09282 1.22440 0.84582 0.92817 1.00832 1.20751 0.89056 0.99454 0.90642 1.61978 1.03097 1.47631 1.13960 1.21959 0.95335 0.93625 0.94830 1.21565 0.97436 1.00412 0.95225 1.21476 0.93106 0.97262 1.02290 1.18588 0.93082 0.94299 0.90598 0.98278 1.21537 0.99620 1.43332 0.92564 0.92556 1.25738 1.01637 0.95784 0.95471 1.70051 1.38340 1.49425 0.97815 0.85550 0.80242 0.77824 0.78280 1.18925 1.20728 1.20884 1.22060 0.86615 0.96974 0.98900 1.83976 1.13969 1.36320 1.76792 1.19272 0.88423 0.87975 1.10314 0.91103 0.90759 0.86751 0.81216 0.81277 0.83075 0.80498 0.92728 0.85243 0.91779 0.95299 0.93328 0.91673 0.92197 0.95649 0.93133 0.95837 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.59 10.50 -93.05 -0.98 -9.57 16 3 C 0.12 3.17 6.70 22.55 0.15 3.32 16 4 C -0.19 -3.30 9.03 22.40 0.20 -3.10 16 5 C -0.09 -1.43 10.03 22.26 0.22 -1.21 16 6 C -0.12 -2.41 10.10 22.46 0.23 -2.18 16 7 C -0.11 -2.94 6.39 -20.22 -0.13 -3.07 16 8 C -0.20 -5.55 11.01 23.54 0.26 -5.29 16 9 C 0.04 1.28 5.82 24.72 0.14 1.43 16 10 C 0.13 3.85 5.47 85.56 0.47 4.31 16 11 N -0.54 -20.21 4.65 -900.92 -4.19 -24.39 16 12 C 0.07 2.68 5.31 86.33 0.46 3.14 16 13 C -0.11 -4.54 6.09 30.65 0.19 -4.35 16 14 C -0.10 -5.09 5.02 30.68 0.15 -4.94 16 15 C 0.05 2.72 2.26 -11.49 -0.03 2.69 16 16 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 17 C -0.53 -29.32 8.56 25.60 0.22 -29.10 16 18 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 19 C 0.01 0.68 5.30 84.66 0.45 1.13 16 20 N -0.92 -53.70 11.35 21.45 0.24 -53.46 16 21 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 C 0.08 3.38 4.68 86.33 0.40 3.78 16 26 O -0.21 -7.16 9.77 -9.42 -0.09 -7.25 16 27 C -0.01 -0.40 7.35 23.05 0.17 -0.23 16 28 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 29 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 30 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.17 1.72 6.26 -2.91 -0.02 1.71 16 32 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.18 4.16 8.06 -2.91 -0.02 4.13 16 35 H 0.05 1.58 8.12 -2.39 -0.02 1.56 16 36 H 0.13 3.23 7.98 -2.39 -0.02 3.22 16 37 H 0.06 2.41 6.49 -2.39 -0.02 2.40 16 38 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.06 3.33 6.15 -2.39 -0.01 3.32 16 42 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.26 14.45 8.31 -92.70 -0.77 13.67 16 44 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 2.87 8.01 -2.39 -0.02 2.85 16 Total: -1.00 -69.40 361.61 2.67 -66.74 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.98 Total: 14.48 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 4.67 Total: -32.35 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.94 Total: -77.85 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -1.07 Total: -16.82 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -69.40 2.67 -66.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826862211.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.792 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds