Wall clock time and date at job start Tue Mar 31 2020 10:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47222 * 262.80001 * 3 2 1 5 5 C 1.37104 * 120.00013 * 265.13622 * 4 3 2 6 6 H 1.07996 * 120.00371 * 52.54425 * 5 4 3 7 7 C 1.38950 * 119.99466 * 232.55495 * 5 4 3 8 8 N 1.31414 * 119.99752 * 200.43814 * 7 5 4 9 9 Si 1.86798 * 120.00407 * 20.43686 * 7 5 4 10 10 H 1.48504 * 109.46957 * 95.14503 * 9 7 5 11 11 H 1.48495 * 109.47273 * 215.14706 * 9 7 5 12 12 H 1.48500 * 109.46948 * 335.14881 * 9 7 5 13 13 C 1.34772 * 120.00129 * 85.13002 * 4 3 2 14 14 O 1.21293 * 119.99640 * 5.02388 * 13 4 3 15 15 C 1.50695 * 120.00378 * 185.03163 * 13 4 3 16 16 H 1.09008 * 109.46740 * 312.68246 * 15 13 4 17 17 C 1.53004 * 109.47387 * 72.67742 * 15 13 4 18 18 C 1.52998 * 109.47446 * 192.68277 * 15 13 4 19 19 C 1.50697 * 109.47405 * 174.99667 * 18 15 13 20 20 C 1.38268 * 119.94408 * 270.25936 * 19 18 15 21 21 C 1.38152 * 120.05558 * 180.25625 * 20 19 18 22 22 C 1.38726 * 119.94170 * 359.46580 * 21 20 19 23 23 O 1.35897 * 120.05780 * 180.30418 * 22 21 20 24 24 C 1.42898 * 117.00612 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47356 * 179.97438 * 24 23 22 26 26 C 1.38740 * 119.89137 * 0.27253 * 22 21 20 27 27 C 1.38143 * 119.93981 * 0.02562 * 26 22 21 28 28 H 4.40649 * 5.51416 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.46772 * 142.80574 * 3 2 1 30 30 H 1.08992 * 109.47497 * 22.79919 * 3 2 1 31 31 H 0.96997 * 120.00146 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.46681 * 56.56232 * 17 15 13 33 33 H 1.09002 * 109.47139 * 176.55365 * 17 15 13 34 34 H 1.08994 * 109.47431 * 296.56213 * 17 15 13 35 35 H 1.09003 * 109.46949 * 54.99379 * 18 15 13 36 36 H 1.09000 * 109.46906 * 294.99373 * 18 15 13 37 37 H 1.08004 * 119.97703 * 0.02562 * 20 19 18 38 38 H 1.08001 * 120.02567 * 179.73381 * 21 20 19 39 39 H 1.08999 * 109.46550 * 299.99615 * 24 23 22 40 40 H 1.08998 * 109.47155 * 59.98858 * 24 23 22 41 41 H 1.08994 * 109.47533 * 59.99755 * 25 24 23 42 42 H 1.09006 * 109.47178 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.47057 * 299.99403 * 25 24 23 44 44 H 1.07999 * 120.02582 * 180.02562 * 26 22 21 45 45 H 1.08001 * 119.96694 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1740 1.3703 5 6 3.4571 1.4247 1.8300 6 1 2.7453 2.2322 1.7436 7 6 4.7004 1.6532 2.4068 8 7 4.8790 2.6905 3.1936 9 14 6.1180 0.4860 2.0640 10 1 6.9374 1.0176 0.9454 11 1 6.9615 0.3611 3.2797 12 1 5.5819 -0.8485 1.6942 13 6 3.2660 -0.8959 2.1792 14 8 3.0680 -2.0115 1.7462 15 6 3.6590 -0.7064 3.6216 16 1 4.5089 -0.0263 3.6801 17 6 2.4799 -0.1170 4.3984 18 6 4.0444 -2.0575 4.2271 19 6 4.5541 -1.8522 5.6303 20 6 5.9003 -1.6249 5.8492 21 6 6.3709 -1.4416 7.1351 22 6 5.4898 -1.4748 8.2062 23 8 5.9493 -1.2887 9.4715 24 6 4.9852 -1.3354 10.5253 25 6 5.6845 -1.1069 11.8668 26 6 4.1387 -1.6977 7.9834 27 6 3.6741 -1.8865 6.6962 28 1 -1.0501 -0.0002 0.0000 29 1 3.0089 0.8195 -0.6213 30 1 3.0098 -0.9465 -0.3982 31 1 5.7468 2.8499 3.5966 32 1 1.6117 -0.7670 4.2891 33 1 2.7433 -0.0369 5.4530 34 1 2.2447 0.8724 4.0064 35 1 4.8245 -2.5181 3.6208 36 1 3.1702 -2.7081 4.2497 37 1 6.5852 -1.5943 5.0146 38 1 7.4231 -1.2684 7.3060 39 1 4.2373 -0.5582 10.3681 40 1 4.4996 -2.3112 10.5305 41 1 6.1704 -0.1313 11.8618 42 1 4.9492 -1.1430 12.6707 43 1 6.4322 -1.8843 12.0238 44 1 3.4508 -1.7236 8.8155 45 1 2.6225 -2.0604 6.5223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840445436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:34 Heat of formation + Delta-G solvation = 7.712322 kcal Electronic energy + Delta-G solvation = -26442.516096 eV Core-core repulsion = 22813.242286 eV Total energy + Delta-G solvation = -3629.273810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.14004 -39.27934 -37.71028 -35.09775 -34.20605 -32.81496 -31.84460 -31.53526 -30.80780 -29.52942 -26.87620 -25.93006 -24.53311 -24.09453 -22.47058 -21.93195 -20.63460 -18.96813 -18.19380 -18.03324 -17.12989 -16.16583 -15.85837 -15.55927 -15.50362 -14.85456 -14.63060 -14.30171 -13.90948 -13.71789 -13.47506 -13.37683 -13.23288 -13.00731 -12.78325 -12.67660 -12.56981 -12.09266 -11.87664 -11.79598 -11.58343 -11.37790 -11.24156 -10.91547 -10.87694 -10.74393 -10.59274 -10.26901 -10.20659 -9.99314 -9.83658 -9.51343 -9.06343 -8.81146 -8.53660 -7.84701 -7.73061 -6.53776 -4.28232 1.53220 1.62078 3.05567 3.17630 3.19185 3.24878 3.28452 3.47246 3.73835 3.93896 4.07210 4.60775 4.73580 4.76246 4.82641 4.97273 5.03480 5.07624 5.07980 5.26080 5.30586 5.52313 5.57418 5.59040 5.67031 5.78591 5.84457 5.86119 5.95108 6.15070 6.17124 6.30252 6.32842 6.39817 6.45179 6.49611 6.52994 6.54528 6.66354 6.85108 6.95651 6.99857 7.16033 7.50887 7.64644 7.66016 8.21761 8.43745 8.92674 9.21854 9.65817 10.54768 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003754 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.242000 B = 7456.355469 C = 8006.072046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.163 4.163 3 C 0.205 3.795 4 N -0.470 5.470 5 C -0.351 4.351 6 H 0.097 0.903 7 C 0.083 3.917 8 N -0.849 5.849 9 Si 0.845 3.155 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.252 1.252 13 C 0.505 3.495 14 O -0.590 6.590 15 C -0.092 4.092 16 H 0.096 0.904 17 C -0.129 4.129 18 C -0.064 4.064 19 C -0.102 4.102 20 C -0.078 4.078 21 C -0.148 4.148 22 C 0.117 3.883 23 O -0.320 6.320 24 C 0.055 3.945 25 C -0.151 4.151 26 C -0.207 4.207 27 C -0.073 4.073 28 H 0.210 0.790 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.277 0.723 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -6.174 10.896 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.164 4.164 3 C 0.083 3.917 4 N -0.192 5.192 5 C -0.478 4.478 6 H 0.115 0.885 7 C -0.126 4.126 8 N -0.483 5.483 9 Si 0.669 3.331 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.176 1.176 13 C 0.295 3.705 14 O -0.474 6.474 15 C -0.113 4.113 16 H 0.114 0.886 17 C -0.187 4.187 18 C -0.101 4.101 19 C -0.102 4.102 20 C -0.096 4.096 21 C -0.167 4.167 22 C 0.072 3.928 23 O -0.234 6.234 24 C -0.021 4.021 25 C -0.208 4.208 26 C -0.225 4.225 27 C -0.091 4.091 28 H 0.227 0.773 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.142 0.858 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.148 -6.540 10.874 12.690 hybrid contribution 0.430 -0.213 -0.127 0.496 sum 0.577 -6.752 10.747 12.705 Atomic orbital electron populations 1.24662 0.95694 1.03742 1.01410 1.23976 0.95205 0.98014 0.99209 1.18517 0.83285 1.02398 0.87494 1.43617 1.59766 1.07488 1.08291 1.18855 1.00429 0.86881 1.41629 0.88505 1.25519 0.97366 0.95483 0.94248 1.69723 1.24783 1.28129 1.25622 0.87292 0.83337 0.83272 0.79189 1.20189 1.19767 1.17598 1.20573 0.77987 0.84170 0.87766 1.90527 1.55151 1.24842 1.76857 1.21114 1.01233 0.96591 0.92330 0.88642 1.21601 0.95696 1.02367 0.99013 1.20462 1.01556 0.97244 0.90888 1.19894 0.93313 1.01199 0.95775 1.20918 0.95405 0.97396 0.95881 1.20345 0.99413 1.06382 0.90547 1.18908 0.92502 0.97375 0.83965 1.86035 1.37002 1.87335 1.13038 1.22730 0.91686 1.01232 0.86433 1.21767 1.01543 1.03259 0.94277 1.21155 0.94250 1.08901 0.98237 1.20854 0.99484 0.97482 0.91249 0.77310 0.88414 0.89597 0.91254 0.93927 0.92688 0.90012 0.91191 0.90480 0.85732 0.85544 0.92047 0.92242 0.91521 0.90532 0.91667 0.85823 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.24 19.25 29.55 0.57 -3.67 16 2 C -0.16 -3.32 13.63 -37.12 -0.51 -3.83 16 3 C 0.21 4.33 5.86 -6.83 -0.04 4.29 16 4 N -0.47 -11.23 1.91 -117.94 -0.22 -11.46 16 5 C -0.35 -8.89 7.91 -14.93 -0.12 -9.01 16 6 H 0.10 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.08 2.10 4.01 -17.47 -0.07 2.03 16 8 N -0.85 -22.42 13.96 55.50 0.77 -21.65 16 9 Si 0.84 19.70 25.13 -169.99 -4.27 15.43 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.25 -6.04 5.71 56.52 0.32 -5.72 16 13 C 0.50 12.14 4.44 -10.99 -0.05 12.10 16 14 O -0.59 -15.09 15.70 5.55 0.09 -15.00 16 15 C -0.09 -2.00 1.35 -91.77 -0.12 -2.12 16 16 H 0.10 2.23 3.30 -51.92 -0.17 2.06 16 17 C -0.13 -2.61 8.73 37.16 0.32 -2.29 16 18 C -0.06 -1.22 4.15 -27.89 -0.12 -1.33 16 19 C -0.10 -1.74 4.72 -104.60 -0.49 -2.23 16 20 C -0.08 -1.31 9.69 -39.60 -0.38 -1.69 16 21 C -0.15 -2.31 9.99 -39.43 -0.39 -2.70 16 22 C 0.12 1.75 6.69 -39.22 -0.26 1.49 16 23 O -0.32 -4.35 10.14 -19.42 -0.20 -4.55 16 24 C 0.05 0.54 5.46 37.16 0.20 0.74 16 25 C -0.15 -1.15 10.28 37.16 0.38 -0.76 16 26 C -0.21 -2.90 9.04 -39.43 -0.36 -3.25 16 27 C -0.07 -1.10 7.88 -39.61 -0.31 -1.42 16 28 H 0.21 2.81 7.80 -54.09 -0.42 2.39 16 29 H 0.10 1.87 8.00 -51.93 -0.42 1.45 16 30 H 0.09 1.77 7.51 -51.93 -0.39 1.38 16 31 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 1.01 6.03 -51.93 -0.31 0.70 16 34 H 0.08 1.84 6.88 -51.93 -0.36 1.48 16 35 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 36 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 37 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 38 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 40 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.12 1.40 6.30 -52.49 -0.33 1.07 16 45 H 0.13 1.71 8.01 -52.49 -0.42 1.29 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -29.79 370.13 -6.63 -36.41 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.63 Total: 8.90 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -1.75 Total: -13.67 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.55 Total: -33.10 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.11 Total: -19.55 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.27 Total: 15.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.79 -6.63 -36.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840445436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.127 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds