Wall clock time and date at job start Tue Mar 31 2020 10:49:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 N 1.46502 * 109.47222 * 262.80001 * 3 2 1
5 5 C 1.37104 * 120.00013 * 265.13622 * 4 3 2
6 6 H 1.07996 * 120.00371 * 52.54425 * 5 4 3
7 7 C 1.38950 * 119.99466 * 232.55495 * 5 4 3
8 8 N 1.31414 * 119.99752 * 200.43814 * 7 5 4
9 9 Si 1.86798 * 120.00407 * 20.43686 * 7 5 4
10 10 H 1.48504 * 109.46957 * 95.14503 * 9 7 5
11 11 H 1.48495 * 109.47273 * 215.14706 * 9 7 5
12 12 H 1.48500 * 109.46948 * 335.14881 * 9 7 5
13 13 C 1.34772 * 120.00129 * 85.13002 * 4 3 2
14 14 O 1.21293 * 119.99640 * 5.02388 * 13 4 3
15 15 C 1.50695 * 120.00378 * 185.03163 * 13 4 3
16 16 H 1.09008 * 109.46740 * 312.68246 * 15 13 4
17 17 C 1.53004 * 109.47387 * 72.67742 * 15 13 4
18 18 C 1.52998 * 109.47446 * 192.68277 * 15 13 4
19 19 C 1.50697 * 109.47405 * 174.99667 * 18 15 13
20 20 C 1.38268 * 119.94408 * 270.25936 * 19 18 15
21 21 C 1.38152 * 120.05558 * 180.25625 * 20 19 18
22 22 C 1.38726 * 119.94170 * 359.46580 * 21 20 19
23 23 O 1.35897 * 120.05780 * 180.30418 * 22 21 20
24 24 C 1.42898 * 117.00612 * 179.97438 * 23 22 21
25 25 C 1.52999 * 109.47356 * 179.97438 * 24 23 22
26 26 C 1.38740 * 119.89137 * 0.27253 * 22 21 20
27 27 C 1.38143 * 119.93981 * 0.02562 * 26 22 21
28 28 H 4.40649 * 5.51416 * 180.02562 * 4 1 2
29 29 H 1.09002 * 109.46772 * 142.80574 * 3 2 1
30 30 H 1.08992 * 109.47497 * 22.79919 * 3 2 1
31 31 H 0.96997 * 120.00146 * 179.97438 * 8 7 5
32 32 H 1.09006 * 109.46681 * 56.56232 * 17 15 13
33 33 H 1.09002 * 109.47139 * 176.55365 * 17 15 13
34 34 H 1.08994 * 109.47431 * 296.56213 * 17 15 13
35 35 H 1.09003 * 109.46949 * 54.99379 * 18 15 13
36 36 H 1.09000 * 109.46906 * 294.99373 * 18 15 13
37 37 H 1.08004 * 119.97703 * 0.02562 * 20 19 18
38 38 H 1.08001 * 120.02567 * 179.73381 * 21 20 19
39 39 H 1.08999 * 109.46550 * 299.99615 * 24 23 22
40 40 H 1.08998 * 109.47155 * 59.98858 * 24 23 22
41 41 H 1.08994 * 109.47533 * 59.99755 * 25 24 23
42 42 H 1.09006 * 109.47178 * 180.02562 * 25 24 23
43 43 H 1.08999 * 109.47057 * 299.99403 * 25 24 23
44 44 H 1.07999 * 120.02582 * 180.02562 * 26 22 21
45 45 H 1.08001 * 119.96694 * 179.97438 * 27 26 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1343 0.1740 1.3703
5 6 3.4571 1.4247 1.8300
6 1 2.7453 2.2322 1.7436
7 6 4.7004 1.6532 2.4068
8 7 4.8790 2.6905 3.1936
9 14 6.1180 0.4860 2.0640
10 1 6.9374 1.0176 0.9454
11 1 6.9615 0.3611 3.2797
12 1 5.5819 -0.8485 1.6942
13 6 3.2660 -0.8959 2.1792
14 8 3.0680 -2.0115 1.7462
15 6 3.6590 -0.7064 3.6216
16 1 4.5089 -0.0263 3.6801
17 6 2.4799 -0.1170 4.3984
18 6 4.0444 -2.0575 4.2271
19 6 4.5541 -1.8522 5.6303
20 6 5.9003 -1.6249 5.8492
21 6 6.3709 -1.4416 7.1351
22 6 5.4898 -1.4748 8.2062
23 8 5.9493 -1.2887 9.4715
24 6 4.9852 -1.3354 10.5253
25 6 5.6845 -1.1069 11.8668
26 6 4.1387 -1.6977 7.9834
27 6 3.6741 -1.8865 6.6962
28 1 -1.0501 -0.0002 0.0000
29 1 3.0089 0.8195 -0.6213
30 1 3.0098 -0.9465 -0.3982
31 1 5.7468 2.8499 3.5966
32 1 1.6117 -0.7670 4.2891
33 1 2.7433 -0.0369 5.4530
34 1 2.2447 0.8724 4.0064
35 1 4.8245 -2.5181 3.6208
36 1 3.1702 -2.7081 4.2497
37 1 6.5852 -1.5943 5.0146
38 1 7.4231 -1.2684 7.3060
39 1 4.2373 -0.5582 10.3681
40 1 4.4996 -2.3112 10.5305
41 1 6.1704 -0.1313 11.8618
42 1 4.9492 -1.1430 12.6707
43 1 6.4322 -1.8843 12.0238
44 1 3.4508 -1.7236 8.8155
45 1 2.6225 -2.0604 6.5223
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000840445436.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:33
Heat of formation + Delta-G solvation = -7.443268 kcal
Electronic energy + Delta-G solvation = -26443.173292 eV
Core-core repulsion = 22813.242286 eV
Total energy + Delta-G solvation = -3629.931006 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.42129 -40.89225 -38.89475 -36.93008 -35.79681 -34.47458 -33.32014 -32.72375
-31.95540 -30.81532 -28.56136 -27.36854 -26.41924 -25.07132 -23.98551 -23.00081
-21.94728 -20.75127 -19.69378 -19.23583 -18.82028 -17.42518 -17.20888 -17.01756
-16.96152 -16.47461 -16.14276 -15.75083 -15.55208 -15.16199 -14.84121 -14.59527
-14.54408 -14.39537 -14.24284 -14.14830 -13.75599 -13.40685 -13.32399 -13.11734
-12.95241 -12.87352 -12.77550 -12.55343 -12.24030 -12.10109 -12.03838 -11.68690
-11.63162 -11.57028 -11.44871 -11.11132 -10.94306 -10.42624 -9.96070 -9.65832
-9.03572 -8.54257 -6.29928 0.35667 0.41549 1.17554 1.27591 1.34838
1.68295 1.89686 1.96677 2.13429 2.26312 2.69383 2.82791 2.98840
3.63407 3.78475 3.81668 3.93747 4.04972 4.07790 4.12236 4.22941
4.26460 4.36652 4.41863 4.43828 4.49635 4.60004 4.66526 4.70315
4.80802 4.87592 4.92784 4.95652 5.00638 5.08432 5.11993 5.19581
5.23441 5.31190 5.37663 5.45593 5.68821 5.71530 5.75395 5.79599
6.39514 6.47239 6.73909 6.94161 7.29704 7.74959 8.57540
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.018104 B = 0.003754 C = 0.003497
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1546.242000 B = 7456.355469 C = 8006.072046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.225 4.225
3 C 0.202 3.798
4 N -0.476 5.476
5 C -0.346 4.346
6 H 0.072 0.928
7 C 0.064 3.936
8 N -0.876 5.876
9 Si 0.886 3.114
10 H -0.273 1.273
11 H -0.261 1.261
12 H -0.265 1.265
13 C 0.497 3.503
14 O -0.610 6.610
15 C -0.094 4.094
16 H 0.079 0.921
17 C -0.118 4.118
18 C -0.053 4.053
19 C -0.120 4.120
20 C -0.093 4.093
21 C -0.160 4.160
22 C 0.117 3.883
23 O -0.332 6.332
24 C 0.042 3.958
25 C -0.148 4.148
26 C -0.201 4.201
27 C -0.073 4.073
28 H 0.254 0.746
29 H 0.108 0.892
30 H 0.084 0.916
31 H 0.281 0.719
32 H 0.054 0.946
33 H 0.072 0.928
34 H 0.053 0.947
35 H 0.056 0.944
36 H 0.081 0.919
37 H 0.118 0.882
38 H 0.136 0.864
39 H 0.068 0.932
40 H 0.074 0.926
41 H 0.060 0.940
42 H 0.101 0.899
43 H 0.063 0.937
44 H 0.155 0.845
45 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.141 -6.842 12.641 14.419
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.226 4.226
3 C 0.080 3.920
4 N -0.197 5.197
5 C -0.474 4.474
6 H 0.089 0.911
7 C -0.143 4.143
8 N -0.511 5.511
9 Si 0.709 3.291
10 H -0.199 1.199
11 H -0.185 1.185
12 H -0.190 1.190
13 C 0.288 3.712
14 O -0.495 6.495
15 C -0.115 4.115
16 H 0.097 0.903
17 C -0.175 4.175
18 C -0.091 4.091
19 C -0.121 4.121
20 C -0.111 4.111
21 C -0.178 4.178
22 C 0.072 3.928
23 O -0.247 6.247
24 C -0.032 4.032
25 C -0.205 4.205
26 C -0.220 4.220
27 C -0.091 4.091
28 H 0.270 0.730
29 H 0.126 0.874
30 H 0.102 0.898
31 H 0.092 0.908
32 H 0.073 0.927
33 H 0.091 0.909
34 H 0.072 0.928
35 H 0.075 0.925
36 H 0.100 0.900
37 H 0.136 0.864
38 H 0.154 0.846
39 H 0.087 0.913
40 H 0.092 0.908
41 H 0.079 0.921
42 H 0.120 0.880
43 H 0.083 0.917
44 H 0.172 0.828
45 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -0.895 -7.195 12.619 14.554
hybrid contribution 0.646 0.006 -0.615 0.891
sum -0.250 -7.188 12.005 13.994
Atomic orbital electron populations
1.25671 0.96582 1.00825 0.98302 1.24070 0.95740 1.00760 1.02058
1.18549 0.84508 1.02778 0.86138 1.43717 1.59663 1.06875 1.09475
1.18571 1.00029 0.86807 1.41951 0.91081 1.25784 0.98501 0.96225
0.93824 1.69768 1.25441 1.29421 1.26426 0.86674 0.81651 0.81272
0.79458 1.19909 1.18514 1.18956 1.21029 0.77597 0.83884 0.88687
1.90498 1.56177 1.25388 1.77441 1.21151 1.01067 0.97902 0.91348
0.90287 1.21491 0.95609 1.00790 0.99631 1.20316 1.01310 0.95560
0.91945 1.19785 0.93851 1.03299 0.95143 1.20953 0.95445 0.98266
0.96405 1.20492 1.00292 1.06600 0.90464 1.19047 0.92804 0.96474
0.84512 1.86041 1.38606 1.86978 1.13043 1.23094 0.91665 1.02335
0.86103 1.21803 1.02101 1.02866 0.93763 1.21450 0.94397 1.07492
0.98649 1.21052 1.00037 0.96831 0.91175 0.73004 0.87362 0.89763
0.90831 0.92702 0.90879 0.92773 0.92521 0.90026 0.86398 0.84576
0.91342 0.90796 0.92099 0.88031 0.91744 0.82784 0.83972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -6.58 19.25 74.32 1.43 -5.15 16
2 C -0.23 -9.09 13.63 31.13 0.42 -8.66 16
3 C 0.20 8.65 5.86 84.57 0.50 9.14 16
4 N -0.48 -23.12 1.91 -645.43 -1.23 -24.35 16
5 C -0.35 -17.93 7.91 84.04 0.66 -17.26 16
6 H 0.07 4.02 8.06 -2.91 -0.02 3.99 16
7 C 0.06 3.28 4.01 84.93 0.34 3.62 16
8 N -0.88 -46.75 13.96 21.66 0.30 -46.44 16
9 Si 0.89 41.13 25.13 68.60 1.72 42.85 16
10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16
11 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16
12 H -0.26 -12.82 5.71 99.48 0.57 -12.25 16
13 C 0.50 24.16 4.44 87.66 0.39 24.55 16
14 O -0.61 -31.46 15.70 -3.07 -0.05 -31.50 16
15 C -0.09 -4.09 1.35 -11.54 -0.02 -4.10 16
16 H 0.08 3.72 3.30 -2.38 -0.01 3.71 16
17 C -0.12 -4.71 8.73 71.98 0.63 -4.08 16
18 C -0.05 -2.04 4.15 29.85 0.12 -1.91 16
19 C -0.12 -4.04 4.72 -19.85 -0.09 -4.14 16
20 C -0.09 -3.09 9.69 22.26 0.22 -2.88 16
21 C -0.16 -4.85 9.99 22.37 0.22 -4.63 16
22 C 0.12 3.27 6.69 22.51 0.15 3.42 16
23 O -0.33 -8.34 10.14 -92.40 -0.94 -9.28 16
24 C 0.04 0.71 5.46 71.98 0.39 1.11 16
25 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16
26 C -0.20 -5.10 9.04 22.37 0.20 -4.89 16
27 C -0.07 -2.07 7.88 22.25 0.18 -1.89 16
28 H 0.25 5.72 7.80 -4.41 -0.03 5.69 16
29 H 0.11 4.24 8.00 -2.39 -0.02 4.22 16
30 H 0.08 3.56 7.51 -2.39 -0.02 3.54 16
31 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16
32 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16
33 H 0.07 2.61 6.03 -2.39 -0.01 2.59 16
34 H 0.05 2.45 6.88 -2.39 -0.02 2.43 16
35 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16
36 H 0.08 2.96 8.05 -2.39 -0.02 2.95 16
37 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16
38 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16
39 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16
40 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16
41 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16
42 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16
43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16
44 H 0.15 2.88 6.30 -2.91 -0.02 2.86 16
45 H 0.14 3.48 8.01 -2.91 -0.02 3.45 16
Total: -1.00 -64.47 370.13 7.13 -57.33
By element:
Atomic # 1 Polarization: 29.44 SS G_CDS: 0.84 Total: 30.28 kcal
Atomic # 6 Polarization: -25.37 SS G_CDS: 6.49 Total: -18.88 kcal
Atomic # 7 Polarization: -69.87 SS G_CDS: -0.93 Total: -70.80 kcal
Atomic # 8 Polarization: -39.80 SS G_CDS: -0.98 Total: -40.79 kcal
Atomic # 14 Polarization: 41.13 SS G_CDS: 1.72 Total: 42.85 kcal
Total: -64.47 7.13 -57.33 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840445436.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.890 kcal
(2) G-P(sol) polarization free energy of solvation -64.467 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.578 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds