Wall clock time and date at job start Tue Mar 31 2020 10:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47222 * 262.80001 * 3 2 1 5 5 C 1.37104 * 120.00013 * 265.13622 * 4 3 2 6 6 H 1.07996 * 120.00371 * 52.54425 * 5 4 3 7 7 C 1.38950 * 119.99466 * 232.55495 * 5 4 3 8 8 N 1.31414 * 119.99752 * 200.43814 * 7 5 4 9 9 Si 1.86798 * 120.00407 * 20.43686 * 7 5 4 10 10 H 1.48504 * 109.46957 * 95.14503 * 9 7 5 11 11 H 1.48495 * 109.47273 * 215.14706 * 9 7 5 12 12 H 1.48500 * 109.46948 * 335.14881 * 9 7 5 13 13 C 1.34772 * 120.00129 * 85.13002 * 4 3 2 14 14 O 1.21293 * 119.99640 * 5.02388 * 13 4 3 15 15 C 1.50695 * 120.00378 * 185.03163 * 13 4 3 16 16 H 1.09008 * 109.46740 * 312.68246 * 15 13 4 17 17 C 1.53004 * 109.47387 * 72.67742 * 15 13 4 18 18 C 1.52998 * 109.47446 * 192.68277 * 15 13 4 19 19 C 1.50697 * 109.47405 * 174.99667 * 18 15 13 20 20 C 1.38268 * 119.94408 * 270.25936 * 19 18 15 21 21 C 1.38152 * 120.05558 * 180.25625 * 20 19 18 22 22 C 1.38726 * 119.94170 * 359.46580 * 21 20 19 23 23 O 1.35897 * 120.05780 * 180.30418 * 22 21 20 24 24 C 1.42898 * 117.00612 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47356 * 179.97438 * 24 23 22 26 26 C 1.38740 * 119.89137 * 0.27253 * 22 21 20 27 27 C 1.38143 * 119.93981 * 0.02562 * 26 22 21 28 28 H 4.40649 * 5.51416 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.46772 * 142.80574 * 3 2 1 30 30 H 1.08992 * 109.47497 * 22.79919 * 3 2 1 31 31 H 0.96997 * 120.00146 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.46681 * 56.56232 * 17 15 13 33 33 H 1.09002 * 109.47139 * 176.55365 * 17 15 13 34 34 H 1.08994 * 109.47431 * 296.56213 * 17 15 13 35 35 H 1.09003 * 109.46949 * 54.99379 * 18 15 13 36 36 H 1.09000 * 109.46906 * 294.99373 * 18 15 13 37 37 H 1.08004 * 119.97703 * 0.02562 * 20 19 18 38 38 H 1.08001 * 120.02567 * 179.73381 * 21 20 19 39 39 H 1.08999 * 109.46550 * 299.99615 * 24 23 22 40 40 H 1.08998 * 109.47155 * 59.98858 * 24 23 22 41 41 H 1.08994 * 109.47533 * 59.99755 * 25 24 23 42 42 H 1.09006 * 109.47178 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.47057 * 299.99403 * 25 24 23 44 44 H 1.07999 * 120.02582 * 180.02562 * 26 22 21 45 45 H 1.08001 * 119.96694 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1740 1.3703 5 6 3.4571 1.4247 1.8300 6 1 2.7453 2.2322 1.7436 7 6 4.7004 1.6532 2.4068 8 7 4.8790 2.6905 3.1936 9 14 6.1180 0.4860 2.0640 10 1 6.9374 1.0176 0.9454 11 1 6.9615 0.3611 3.2797 12 1 5.5819 -0.8485 1.6942 13 6 3.2660 -0.8959 2.1792 14 8 3.0680 -2.0115 1.7462 15 6 3.6590 -0.7064 3.6216 16 1 4.5089 -0.0263 3.6801 17 6 2.4799 -0.1170 4.3984 18 6 4.0444 -2.0575 4.2271 19 6 4.5541 -1.8522 5.6303 20 6 5.9003 -1.6249 5.8492 21 6 6.3709 -1.4416 7.1351 22 6 5.4898 -1.4748 8.2062 23 8 5.9493 -1.2887 9.4715 24 6 4.9852 -1.3354 10.5253 25 6 5.6845 -1.1069 11.8668 26 6 4.1387 -1.6977 7.9834 27 6 3.6741 -1.8865 6.6962 28 1 -1.0501 -0.0002 0.0000 29 1 3.0089 0.8195 -0.6213 30 1 3.0098 -0.9465 -0.3982 31 1 5.7468 2.8499 3.5966 32 1 1.6117 -0.7670 4.2891 33 1 2.7433 -0.0369 5.4530 34 1 2.2447 0.8724 4.0064 35 1 4.8245 -2.5181 3.6208 36 1 3.1702 -2.7081 4.2497 37 1 6.5852 -1.5943 5.0146 38 1 7.4231 -1.2684 7.3060 39 1 4.2373 -0.5582 10.3681 40 1 4.4996 -2.3112 10.5305 41 1 6.1704 -0.1313 11.8618 42 1 4.9492 -1.1430 12.6707 43 1 6.4322 -1.8843 12.0238 44 1 3.4508 -1.7236 8.8155 45 1 2.6225 -2.0604 6.5223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840445436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:33 Heat of formation + Delta-G solvation = -7.443268 kcal Electronic energy + Delta-G solvation = -26443.173292 eV Core-core repulsion = 22813.242286 eV Total energy + Delta-G solvation = -3629.931006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42129 -40.89225 -38.89475 -36.93008 -35.79681 -34.47458 -33.32014 -32.72375 -31.95540 -30.81532 -28.56136 -27.36854 -26.41924 -25.07132 -23.98551 -23.00081 -21.94728 -20.75127 -19.69378 -19.23583 -18.82028 -17.42518 -17.20888 -17.01756 -16.96152 -16.47461 -16.14276 -15.75083 -15.55208 -15.16199 -14.84121 -14.59527 -14.54408 -14.39537 -14.24284 -14.14830 -13.75599 -13.40685 -13.32399 -13.11734 -12.95241 -12.87352 -12.77550 -12.55343 -12.24030 -12.10109 -12.03838 -11.68690 -11.63162 -11.57028 -11.44871 -11.11132 -10.94306 -10.42624 -9.96070 -9.65832 -9.03572 -8.54257 -6.29928 0.35667 0.41549 1.17554 1.27591 1.34838 1.68295 1.89686 1.96677 2.13429 2.26312 2.69383 2.82791 2.98840 3.63407 3.78475 3.81668 3.93747 4.04972 4.07790 4.12236 4.22941 4.26460 4.36652 4.41863 4.43828 4.49635 4.60004 4.66526 4.70315 4.80802 4.87592 4.92784 4.95652 5.00638 5.08432 5.11993 5.19581 5.23441 5.31190 5.37663 5.45593 5.68821 5.71530 5.75395 5.79599 6.39514 6.47239 6.73909 6.94161 7.29704 7.74959 8.57540 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003754 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.242000 B = 7456.355469 C = 8006.072046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.225 4.225 3 C 0.202 3.798 4 N -0.476 5.476 5 C -0.346 4.346 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.876 5.876 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.261 1.261 12 H -0.265 1.265 13 C 0.497 3.503 14 O -0.610 6.610 15 C -0.094 4.094 16 H 0.079 0.921 17 C -0.118 4.118 18 C -0.053 4.053 19 C -0.120 4.120 20 C -0.093 4.093 21 C -0.160 4.160 22 C 0.117 3.883 23 O -0.332 6.332 24 C 0.042 3.958 25 C -0.148 4.148 26 C -0.201 4.201 27 C -0.073 4.073 28 H 0.254 0.746 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.281 0.719 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.155 0.845 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -6.842 12.641 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.226 4.226 3 C 0.080 3.920 4 N -0.197 5.197 5 C -0.474 4.474 6 H 0.089 0.911 7 C -0.143 4.143 8 N -0.511 5.511 9 Si 0.709 3.291 10 H -0.199 1.199 11 H -0.185 1.185 12 H -0.190 1.190 13 C 0.288 3.712 14 O -0.495 6.495 15 C -0.115 4.115 16 H 0.097 0.903 17 C -0.175 4.175 18 C -0.091 4.091 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.178 4.178 22 C 0.072 3.928 23 O -0.247 6.247 24 C -0.032 4.032 25 C -0.205 4.205 26 C -0.220 4.220 27 C -0.091 4.091 28 H 0.270 0.730 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.083 0.917 44 H 0.172 0.828 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.895 -7.195 12.619 14.554 hybrid contribution 0.646 0.006 -0.615 0.891 sum -0.250 -7.188 12.005 13.994 Atomic orbital electron populations 1.25671 0.96582 1.00825 0.98302 1.24070 0.95740 1.00760 1.02058 1.18549 0.84508 1.02778 0.86138 1.43717 1.59663 1.06875 1.09475 1.18571 1.00029 0.86807 1.41951 0.91081 1.25784 0.98501 0.96225 0.93824 1.69768 1.25441 1.29421 1.26426 0.86674 0.81651 0.81272 0.79458 1.19909 1.18514 1.18956 1.21029 0.77597 0.83884 0.88687 1.90498 1.56177 1.25388 1.77441 1.21151 1.01067 0.97902 0.91348 0.90287 1.21491 0.95609 1.00790 0.99631 1.20316 1.01310 0.95560 0.91945 1.19785 0.93851 1.03299 0.95143 1.20953 0.95445 0.98266 0.96405 1.20492 1.00292 1.06600 0.90464 1.19047 0.92804 0.96474 0.84512 1.86041 1.38606 1.86978 1.13043 1.23094 0.91665 1.02335 0.86103 1.21803 1.02101 1.02866 0.93763 1.21450 0.94397 1.07492 0.98649 1.21052 1.00037 0.96831 0.91175 0.73004 0.87362 0.89763 0.90831 0.92702 0.90879 0.92773 0.92521 0.90026 0.86398 0.84576 0.91342 0.90796 0.92099 0.88031 0.91744 0.82784 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.58 19.25 74.32 1.43 -5.15 16 2 C -0.23 -9.09 13.63 31.13 0.42 -8.66 16 3 C 0.20 8.65 5.86 84.57 0.50 9.14 16 4 N -0.48 -23.12 1.91 -645.43 -1.23 -24.35 16 5 C -0.35 -17.93 7.91 84.04 0.66 -17.26 16 6 H 0.07 4.02 8.06 -2.91 -0.02 3.99 16 7 C 0.06 3.28 4.01 84.93 0.34 3.62 16 8 N -0.88 -46.75 13.96 21.66 0.30 -46.44 16 9 Si 0.89 41.13 25.13 68.60 1.72 42.85 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.26 -12.82 5.71 99.48 0.57 -12.25 16 13 C 0.50 24.16 4.44 87.66 0.39 24.55 16 14 O -0.61 -31.46 15.70 -3.07 -0.05 -31.50 16 15 C -0.09 -4.09 1.35 -11.54 -0.02 -4.10 16 16 H 0.08 3.72 3.30 -2.38 -0.01 3.71 16 17 C -0.12 -4.71 8.73 71.98 0.63 -4.08 16 18 C -0.05 -2.04 4.15 29.85 0.12 -1.91 16 19 C -0.12 -4.04 4.72 -19.85 -0.09 -4.14 16 20 C -0.09 -3.09 9.69 22.26 0.22 -2.88 16 21 C -0.16 -4.85 9.99 22.37 0.22 -4.63 16 22 C 0.12 3.27 6.69 22.51 0.15 3.42 16 23 O -0.33 -8.34 10.14 -92.40 -0.94 -9.28 16 24 C 0.04 0.71 5.46 71.98 0.39 1.11 16 25 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 26 C -0.20 -5.10 9.04 22.37 0.20 -4.89 16 27 C -0.07 -2.07 7.88 22.25 0.18 -1.89 16 28 H 0.25 5.72 7.80 -4.41 -0.03 5.69 16 29 H 0.11 4.24 8.00 -2.39 -0.02 4.22 16 30 H 0.08 3.56 7.51 -2.39 -0.02 3.54 16 31 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.07 2.61 6.03 -2.39 -0.01 2.59 16 34 H 0.05 2.45 6.88 -2.39 -0.02 2.43 16 35 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16 36 H 0.08 2.96 8.05 -2.39 -0.02 2.95 16 37 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 40 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.15 2.88 6.30 -2.91 -0.02 2.86 16 45 H 0.14 3.48 8.01 -2.91 -0.02 3.45 16 Total: -1.00 -64.47 370.13 7.13 -57.33 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.84 Total: 30.28 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 6.49 Total: -18.88 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -0.93 Total: -70.80 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.98 Total: -40.79 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.72 Total: 42.85 kcal Total: -64.47 7.13 -57.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840445436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.890 kcal (2) G-P(sol) polarization free energy of solvation -64.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds