Wall clock time and date at job start Tue Mar 31 2020 11:00:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.46429 * 111.00189 * 2 1
4 4 C 1.53378 * 108.66290 * 72.19349 * 3 2 1
5 5 C 1.53042 * 107.93163 * 68.23164 * 4 3 2
6 6 H 1.09000 * 109.43772 * 72.75076 * 5 4 3
7 7 C 1.50694 * 109.44277 * 192.63402 * 5 4 3
8 8 O 1.20833 * 119.99828 * 33.45984 * 7 5 4
9 9 O 1.34228 * 120.00480 * 213.45657 * 7 5 4
10 10 C 1.45197 * 117.00246 * 180.70917 * 9 7 5
11 11 C 1.53001 * 109.47173 * 186.68837 * 10 9 7
12 12 C 1.50699 * 115.54803 * 302.63113 * 11 10 9
13 13 H 1.08006 * 119.99191 * 143.30756 * 12 11 10
14 14 C 1.37876 * 120.00372 * 323.31015 * 12 11 10
15 15 N 1.31512 * 120.00034 * 169.32119 * 14 12 11
16 16 Si 1.86793 * 119.99841 * 349.32081 * 14 12 11
17 17 H 1.48504 * 109.47077 * 94.96351 * 16 14 12
18 18 H 1.48502 * 109.47073 * 214.96210 * 16 14 12
19 19 H 1.48502 * 109.47202 * 334.96151 * 16 14 12
20 20 C 1.53004 * 117.49716 * 156.96377 * 11 10 9
21 21 C 1.53001 * 117.49722 * 88.30647 * 11 10 9
22 22 C 1.50803 * 109.65573 * 312.69570 * 5 4 3
23 23 C 1.38613 * 118.12003 * 195.48100 * 22 5 4
24 24 C 1.38061 * 120.48806 * 180.39406 * 23 22 5
25 25 C 1.38312 * 119.88684 * 359.97438 * 24 23 22
26 26 C 1.37811 * 119.95323 * 359.87667 * 25 24 23
27 27 C 1.38375 * 122.01816 * 15.65717 * 22 5 4
28 28 H 1.08999 * 109.46699 * 297.21919 * 1 2 3
29 29 H 1.08994 * 109.47582 * 57.22277 * 1 2 3
30 30 H 1.09001 * 109.47010 * 177.22308 * 1 2 3
31 31 H 1.09001 * 109.60733 * 191.95145 * 3 2 1
32 32 H 1.09001 * 109.60400 * 312.44203 * 3 2 1
33 33 H 1.09000 * 109.76742 * 187.84398 * 4 3 2
34 34 H 1.09004 * 109.76628 * 308.57401 * 4 3 2
35 35 H 1.09001 * 109.46980 * 306.69385 * 10 9 7
36 36 H 1.09002 * 109.46790 * 66.69034 * 10 9 7
37 37 H 0.96993 * 120.00170 * 180.02562 * 15 14 12
38 38 H 1.08997 * 117.49884 * 0.02562 * 20 11 10
39 39 H 1.08999 * 117.49696 * 145.02001 * 20 11 10
40 40 H 1.08998 * 117.49380 * 214.97870 * 21 11 10
41 41 H 1.08998 * 117.49918 * 359.97015 * 21 11 10
42 42 H 1.08002 * 119.76035 * 0.44260 * 23 22 5
43 43 H 1.07995 * 120.05956 * 179.97438 * 24 23 22
44 44 H 1.07992 * 120.02445 * 180.15483 * 25 24 23
45 45 H 1.08000 * 119.79368 * 180.09993 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9938 1.3670 0.0000
4 6 1.7548 1.9845 1.3835
5 6 2.6507 1.2541 2.3866
6 1 3.6870 1.5550 2.2336
7 6 2.2277 1.6097 3.7886
8 8 1.0635 1.8211 4.0331
9 8 3.1443 1.6916 4.7658
10 6 2.6630 2.0232 6.0949
11 6 3.8548 2.2344 7.0309
12 6 4.8045 1.0701 7.1468
13 1 5.8657 1.2464 7.2427
14 6 4.3186 -0.2202 7.1306
15 7 5.1488 -1.2341 7.0198
16 14 2.4812 -0.5280 7.2658
17 1 1.9015 -0.6691 5.9059
18 1 2.2436 -1.7746 8.0370
19 1 1.8377 0.6150 7.9621
20 6 3.6295 3.0894 8.2796
21 6 4.4494 3.6419 7.1110
22 6 2.5259 -0.2355 2.1872
23 6 2.9928 -1.0703 3.1905
24 6 2.9104 -2.4418 3.0555
25 6 2.3579 -2.9898 1.9120
26 6 1.8888 -2.1661 0.9116
27 6 1.9686 -0.7784 1.0430
28 1 -0.3633 0.4701 0.9139
29 1 -0.3634 0.5563 -0.8640
30 1 -0.3633 -1.0265 -0.0498
31 1 3.0627 1.3485 -0.2126
32 1 1.4779 1.9568 -0.7578
33 1 2.0108 3.0438 1.3636
34 1 0.7089 1.8632 1.6657
35 1 2.0704 2.9369 6.0492
36 1 2.0453 1.2079 6.4715
37 1 4.8070 -2.1417 7.0080
38 1 2.6322 3.5011 8.4345
39 1 4.1685 2.8100 9.1848
40 1 5.5275 3.7256 7.2478
41 1 3.9919 4.4172 6.4965
42 1 3.4236 -0.6447 4.0848
43 1 3.2767 -3.0857 3.8413
44 1 2.2901 -4.0623 1.8051
45 1 1.4564 -2.5967 0.0206
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000849766990.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:30
Heat of formation + Delta-G solvation = -8.796133 kcal
Electronic energy + Delta-G solvation = -27587.229931 eV
Core-core repulsion = 23957.240261 eV
Total energy + Delta-G solvation = -3629.989671 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.06519 -39.60342 -37.24947 -36.91192 -35.44948 -33.96286 -32.26298 -30.40397
-29.81705 -28.20295 -27.15558 -25.37014 -24.53273 -23.24360 -22.39916 -21.54769
-20.53161 -19.42639 -19.21113 -17.58739 -17.08187 -16.80557 -16.29179 -16.12939
-15.64591 -15.42656 -14.74487 -14.48093 -14.14752 -14.00587 -13.81468 -13.35539
-13.06113 -12.99348 -12.81830 -12.57016 -12.42763 -12.18967 -12.10660 -12.06928
-11.80923 -11.34298 -11.05817 -10.88437 -10.84821 -10.69709 -10.63931 -10.48126
-10.18443 -9.72448 -9.58273 -9.32835 -9.31048 -8.74468 -8.60845 -8.45394
-7.91393 -6.22267 -4.14727 1.38376 1.53696 2.54768 3.06988 3.17218
3.25501 3.30852 3.65683 3.94609 4.26993 4.49963 4.61786 4.66420
4.79327 4.96386 5.14911 5.19258 5.20939 5.27693 5.34274 5.34498
5.43071 5.52568 5.55987 5.58918 5.62930 5.66180 5.67716 5.70844
5.86837 5.90305 6.06102 6.08038 6.20101 6.35869 6.37938 6.42875
6.52669 6.56550 6.75933 6.77436 6.84572 6.94175 7.01333 7.07598
7.37534 7.62584 8.19581 8.40755 8.82266 9.41861 10.90085
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.015857 B = 0.005467 C = 0.004520
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1765.390296 B = 5120.260008 C = 6193.424711
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.502 5.502
3 C 0.059 3.941
4 C -0.148 4.148
5 C -0.037 4.037
6 H 0.116 0.884
7 C 0.464 3.536
8 O -0.519 6.519
9 O -0.318 6.318
10 C 0.090 3.910
11 C 0.003 3.997
12 C -0.474 4.474
13 H 0.082 0.918
14 C 0.086 3.914
15 N -0.883 5.883
16 Si 0.869 3.131
17 H -0.276 1.276
18 H -0.293 1.293
19 H -0.264 1.264
20 C -0.197 4.197
21 C -0.183 4.183
22 C -0.115 4.115
23 C -0.090 4.090
24 C -0.127 4.127
25 C -0.104 4.104
26 C -0.127 4.127
27 C 0.115 3.885
28 H 0.038 0.962
29 H 0.073 0.927
30 H 0.072 0.928
31 H 0.086 0.914
32 H 0.088 0.912
33 H 0.083 0.917
34 H 0.085 0.915
35 H 0.057 0.943
36 H 0.063 0.937
37 H 0.266 0.734
38 H 0.069 0.931
39 H 0.093 0.907
40 H 0.088 0.912
41 H 0.073 0.927
42 H 0.138 0.862
43 H 0.126 0.874
44 H 0.124 0.876
45 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.406 2.026 -13.745 15.744
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.218 5.218
3 C -0.069 4.069
4 C -0.187 4.187
5 C -0.056 4.056
6 H 0.134 0.866
7 C 0.307 3.693
8 O -0.409 6.409
9 O -0.233 6.233
10 C 0.018 3.982
11 C 0.002 3.998
12 C -0.511 4.511
13 H 0.100 0.900
14 C -0.117 4.117
15 N -0.520 5.520
16 Si 0.701 3.299
17 H -0.203 1.203
18 H -0.220 1.220
19 H -0.191 1.191
20 C -0.235 4.235
21 C -0.220 4.220
22 C -0.118 4.118
23 C -0.108 4.108
24 C -0.145 4.145
25 C -0.122 4.122
26 C -0.147 4.147
27 C 0.020 3.980
28 H 0.057 0.943
29 H 0.092 0.908
30 H 0.091 0.909
31 H 0.104 0.896
32 H 0.107 0.893
33 H 0.101 0.899
34 H 0.104 0.896
35 H 0.075 0.925
36 H 0.081 0.919
37 H 0.076 0.924
38 H 0.088 0.912
39 H 0.111 0.889
40 H 0.106 0.894
41 H 0.091 0.909
42 H 0.156 0.844
43 H 0.144 0.856
44 H 0.142 0.858
45 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -7.580 1.694 -14.111 16.107
hybrid contribution -1.298 0.169 1.047 1.676
sum -8.877 1.862 -13.064 15.904
Atomic orbital electron populations
1.22500 0.85272 1.02863 1.01329 1.58789 1.08328 1.13000 1.41678
1.22240 1.01773 0.87180 0.95663 1.22218 1.01023 1.00282 0.95204
1.19877 1.03040 0.93444 0.89212 0.86580 1.23367 0.84529 0.73336
0.88094 1.90583 1.19874 1.46614 1.83825 1.86665 1.39061 1.79019
1.18518 1.23224 0.96877 0.99382 0.78733 1.19266 0.94912 0.92403
0.93256 1.20245 0.93597 0.87394 1.49879 0.90006 1.24848 0.96843
0.96063 0.93958 1.69893 1.34559 0.99012 1.48501 0.87270 0.87025
0.76998 0.78603 1.20312 1.22049 1.19078 1.23175 0.99432 1.06717
0.94211 1.22817 0.99140 0.97710 1.02357 1.19396 1.04794 0.93054
0.94581 1.21484 0.96765 0.93985 0.98595 1.21147 1.00147 0.95027
0.98218 1.21028 0.98007 0.99591 0.93605 1.20908 1.02869 0.91382
0.99537 1.18336 0.98516 0.92635 0.88560 0.94327 0.90778 0.90948
0.89567 0.89322 0.89865 0.89636 0.92511 0.91930 0.92399 0.91212
0.88858 0.89391 0.90879 0.84379 0.85594 0.85812 0.85703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 9.22 60.06 0.55 0.83 16
2 N -0.50 -6.15 4.74 -179.14 -0.85 -7.00 16
3 C 0.06 0.63 5.82 -3.88 -0.02 0.61 16
4 C -0.15 -1.91 5.18 -26.51 -0.14 -2.04 16
5 C -0.04 -0.59 2.76 -92.85 -0.26 -0.85 16
6 H 0.12 1.73 8.14 -51.93 -0.42 1.31 16
7 C 0.46 9.39 6.01 36.00 0.22 9.60 16
8 O -0.52 -11.38 15.65 -18.76 -0.29 -11.67 16
9 O -0.32 -7.16 9.09 -39.25 -0.36 -7.52 16
10 C 0.09 2.08 4.15 37.16 0.15 2.24 16
11 C 0.00 0.06 1.56 -155.66 -0.24 -0.18 16
12 C -0.47 -12.99 9.37 -34.44 -0.32 -13.31 16
13 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16
14 C 0.09 2.41 5.43 -17.82 -0.10 2.31 16
15 N -0.88 -25.67 13.96 55.43 0.77 -24.90 16
16 Si 0.87 21.89 24.10 -169.99 -4.10 17.79 16
17 H -0.28 -6.97 7.01 56.52 0.40 -6.57 16
18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
19 H -0.26 -6.46 6.40 56.52 0.36 -6.10 16
20 C -0.20 -4.08 9.96 -26.69 -0.27 -4.34 16
21 C -0.18 -3.69 9.94 -26.69 -0.27 -3.96 16
22 C -0.12 -1.97 5.40 -104.38 -0.56 -2.54 16
23 C -0.09 -1.72 9.07 -39.51 -0.36 -2.08 16
24 C -0.13 -2.14 10.05 -39.62 -0.40 -2.54 16
25 C -0.10 -1.45 10.04 -39.71 -0.40 -1.85 16
26 C -0.13 -1.73 9.29 -39.22 -0.36 -2.10 16
27 C 0.12 1.71 5.12 -83.85 -0.43 1.28 16
28 H 0.04 0.46 6.60 -51.93 -0.34 0.12 16
29 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16
30 H 0.07 0.72 7.70 -51.93 -0.40 0.32 16
31 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16
32 H 0.09 0.73 7.98 -51.93 -0.41 0.32 16
33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16
34 H 0.09 1.22 5.77 -51.93 -0.30 0.92 16
35 H 0.06 1.20 7.94 -51.93 -0.41 0.79 16
36 H 0.06 1.54 2.43 -51.93 -0.13 1.42 16
37 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16
38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16
39 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16
40 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16
41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
42 H 0.14 3.09 6.68 -52.49 -0.35 2.74 16
43 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16
44 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16
45 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16
LS Contribution 357.06 15.07 5.38 5.38
Total: -1.00 -31.09 357.06 -9.23 -40.32
By element:
Atomic # 1 Polarization: 13.11 SS G_CDS: -6.59 Total: 6.52 kcal
Atomic # 6 Polarization: -15.73 SS G_CDS: -3.20 Total: -18.93 kcal
Atomic # 7 Polarization: -31.82 SS G_CDS: -0.08 Total: -31.90 kcal
Atomic # 8 Polarization: -18.54 SS G_CDS: -0.65 Total: -19.19 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -4.10 Total: 17.79 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -31.09 -9.23 -40.32 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000849766990.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.526 kcal
(2) G-P(sol) polarization free energy of solvation -31.089 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.796 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds