Wall clock time and date at job start Tue Mar 31 2020 11:00:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.46429 * 111.00189 * 2 1
4 4 C 1.53378 * 108.66290 * 72.19349 * 3 2 1
5 5 C 1.53042 * 107.93163 * 68.23164 * 4 3 2
6 6 H 1.09000 * 109.43772 * 72.75076 * 5 4 3
7 7 C 1.50694 * 109.44277 * 192.63402 * 5 4 3
8 8 O 1.20833 * 119.99828 * 33.45984 * 7 5 4
9 9 O 1.34228 * 120.00480 * 213.45657 * 7 5 4
10 10 C 1.45197 * 117.00246 * 180.70917 * 9 7 5
11 11 C 1.53001 * 109.47173 * 186.68837 * 10 9 7
12 12 C 1.50699 * 115.54803 * 302.63113 * 11 10 9
13 13 H 1.08006 * 119.99191 * 143.30756 * 12 11 10
14 14 C 1.37876 * 120.00372 * 323.31015 * 12 11 10
15 15 N 1.31512 * 120.00034 * 169.32119 * 14 12 11
16 16 Si 1.86793 * 119.99841 * 349.32081 * 14 12 11
17 17 H 1.48504 * 109.47077 * 94.96351 * 16 14 12
18 18 H 1.48502 * 109.47073 * 214.96210 * 16 14 12
19 19 H 1.48502 * 109.47202 * 334.96151 * 16 14 12
20 20 C 1.53004 * 117.49716 * 156.96377 * 11 10 9
21 21 C 1.53001 * 117.49722 * 88.30647 * 11 10 9
22 22 C 1.50803 * 109.65573 * 312.69570 * 5 4 3
23 23 C 1.38613 * 118.12003 * 195.48100 * 22 5 4
24 24 C 1.38061 * 120.48806 * 180.39406 * 23 22 5
25 25 C 1.38312 * 119.88684 * 359.97438 * 24 23 22
26 26 C 1.37811 * 119.95323 * 359.87667 * 25 24 23
27 27 C 1.38375 * 122.01816 * 15.65717 * 22 5 4
28 28 H 1.08999 * 109.46699 * 297.21919 * 1 2 3
29 29 H 1.08994 * 109.47582 * 57.22277 * 1 2 3
30 30 H 1.09001 * 109.47010 * 177.22308 * 1 2 3
31 31 H 1.09001 * 109.60733 * 191.95145 * 3 2 1
32 32 H 1.09001 * 109.60400 * 312.44203 * 3 2 1
33 33 H 1.09000 * 109.76742 * 187.84398 * 4 3 2
34 34 H 1.09004 * 109.76628 * 308.57401 * 4 3 2
35 35 H 1.09001 * 109.46980 * 306.69385 * 10 9 7
36 36 H 1.09002 * 109.46790 * 66.69034 * 10 9 7
37 37 H 0.96993 * 120.00170 * 180.02562 * 15 14 12
38 38 H 1.08997 * 117.49884 * 0.02562 * 20 11 10
39 39 H 1.08999 * 117.49696 * 145.02001 * 20 11 10
40 40 H 1.08998 * 117.49380 * 214.97870 * 21 11 10
41 41 H 1.08998 * 117.49918 * 359.97015 * 21 11 10
42 42 H 1.08002 * 119.76035 * 0.44260 * 23 22 5
43 43 H 1.07995 * 120.05956 * 179.97438 * 24 23 22
44 44 H 1.07992 * 120.02445 * 180.15483 * 25 24 23
45 45 H 1.08000 * 119.79368 * 180.09993 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9938 1.3670 0.0000
4 6 1.7548 1.9845 1.3835
5 6 2.6507 1.2541 2.3866
6 1 3.6870 1.5550 2.2336
7 6 2.2277 1.6097 3.7886
8 8 1.0635 1.8211 4.0331
9 8 3.1443 1.6916 4.7658
10 6 2.6630 2.0232 6.0949
11 6 3.8548 2.2344 7.0309
12 6 4.8045 1.0701 7.1468
13 1 5.8657 1.2464 7.2427
14 6 4.3186 -0.2202 7.1306
15 7 5.1488 -1.2341 7.0198
16 14 2.4812 -0.5280 7.2658
17 1 1.9015 -0.6691 5.9059
18 1 2.2436 -1.7746 8.0370
19 1 1.8377 0.6150 7.9621
20 6 3.6295 3.0894 8.2796
21 6 4.4494 3.6419 7.1110
22 6 2.5259 -0.2355 2.1872
23 6 2.9928 -1.0703 3.1905
24 6 2.9104 -2.4418 3.0555
25 6 2.3579 -2.9898 1.9120
26 6 1.8888 -2.1661 0.9116
27 6 1.9686 -0.7784 1.0430
28 1 -0.3633 0.4701 0.9139
29 1 -0.3634 0.5563 -0.8640
30 1 -0.3633 -1.0265 -0.0498
31 1 3.0627 1.3485 -0.2126
32 1 1.4779 1.9568 -0.7578
33 1 2.0108 3.0438 1.3636
34 1 0.7089 1.8632 1.6657
35 1 2.0704 2.9369 6.0492
36 1 2.0453 1.2079 6.4715
37 1 4.8070 -2.1417 7.0080
38 1 2.6322 3.5011 8.4345
39 1 4.1685 2.8100 9.1848
40 1 5.5275 3.7256 7.2478
41 1 3.9919 4.4172 6.4965
42 1 3.4236 -0.6447 4.0848
43 1 3.2767 -3.0857 3.8413
44 1 2.2901 -4.0623 1.8051
45 1 1.4564 -2.5967 0.0206
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000849766990.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:00:29
Heat of formation + Delta-G solvation = -26.636237 kcal
Electronic energy + Delta-G solvation = -27588.003536 eV
Core-core repulsion = 23957.240261 eV
Total energy + Delta-G solvation = -3630.763275 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.37282 -41.04486 -38.94413 -38.04494 -37.13863 -35.15984 -34.39598 -31.50133
-30.98707 -29.76424 -28.41416 -27.28328 -25.71711 -24.33131 -23.71276 -23.17113
-21.93396 -21.22718 -20.46276 -19.14229 -18.80721 -18.42301 -17.82217 -17.25504
-17.14862 -16.82197 -16.32352 -15.66937 -15.49031 -15.33357 -15.12079 -15.01797
-14.71340 -14.36699 -14.26179 -13.98185 -13.91677 -13.47172 -13.21477 -13.14844
-13.01320 -12.85941 -12.77096 -12.44166 -12.35002 -12.23925 -12.08444 -11.81744
-11.77859 -11.49890 -11.43610 -11.31295 -10.65437 -10.46219 -10.40055 -9.85063
-9.00092 -8.40476 -6.33753 0.17225 0.29673 0.97484 1.13880 1.17940
1.23073 1.57565 2.16419 2.60115 2.77620 2.83847 3.27280 3.37792
3.45207 3.62261 3.76367 3.82639 3.88423 4.03470 4.09682 4.10532
4.16887 4.28549 4.31936 4.39521 4.41437 4.49526 4.53205 4.61934
4.64225 4.74650 4.77929 4.80421 4.82632 4.95828 4.97104 5.09294
5.11288 5.25176 5.33761 5.39695 5.44221 5.53358 5.59968 5.71167
5.94254 6.22413 6.27839 6.55733 6.64565 7.24731 8.76112
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.015857 B = 0.005467 C = 0.004520
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1765.390296 B = 5120.260008 C = 6193.424711
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.499 5.499
3 C 0.060 3.940
4 C -0.141 4.141
5 C -0.036 4.036
6 H 0.122 0.878
7 C 0.461 3.539
8 O -0.540 6.540
9 O -0.336 6.336
10 C 0.092 3.908
11 C -0.038 4.038
12 C -0.475 4.475
13 H 0.046 0.954
14 C 0.047 3.953
15 N -0.925 5.925
16 Si 0.920 3.080
17 H -0.287 1.287
18 H -0.294 1.294
19 H -0.249 1.249
20 C -0.180 4.180
21 C -0.161 4.161
22 C -0.133 4.133
23 C -0.123 4.123
24 C -0.149 4.149
25 C -0.093 4.093
26 C -0.121 4.121
27 C 0.119 3.881
28 H 0.020 0.980
29 H 0.104 0.896
30 H 0.079 0.921
31 H 0.091 0.909
32 H 0.124 0.876
33 H 0.103 0.897
34 H 0.071 0.929
35 H 0.078 0.922
36 H 0.044 0.956
37 H 0.267 0.733
38 H 0.097 0.903
39 H 0.092 0.908
40 H 0.086 0.914
41 H 0.101 0.899
42 H 0.093 0.907
43 H 0.118 0.882
44 H 0.159 0.841
45 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.528 3.157 -16.365 19.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.215 5.215
3 C -0.067 4.067
4 C -0.179 4.179
5 C -0.056 4.056
6 H 0.140 0.860
7 C 0.306 3.694
8 O -0.430 6.430
9 O -0.251 6.251
10 C 0.019 3.981
11 C -0.039 4.039
12 C -0.513 4.513
13 H 0.064 0.936
14 C -0.152 4.152
15 N -0.564 5.564
16 Si 0.751 3.249
17 H -0.215 1.215
18 H -0.222 1.222
19 H -0.174 1.174
20 C -0.217 4.217
21 C -0.199 4.199
22 C -0.136 4.136
23 C -0.142 4.142
24 C -0.167 4.167
25 C -0.111 4.111
26 C -0.140 4.140
27 C 0.023 3.977
28 H 0.038 0.962
29 H 0.123 0.877
30 H 0.098 0.902
31 H 0.109 0.891
32 H 0.142 0.858
33 H 0.121 0.879
34 H 0.090 0.910
35 H 0.096 0.904
36 H 0.061 0.939
37 H 0.076 0.924
38 H 0.116 0.884
39 H 0.110 0.890
40 H 0.105 0.895
41 H 0.120 0.880
42 H 0.111 0.889
43 H 0.136 0.864
44 H 0.177 0.823
45 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -9.709 2.856 -16.725 19.549
hybrid contribution -0.579 -0.153 1.803 1.900
sum -10.288 2.702 -14.922 18.326
Atomic orbital electron populations
1.22611 0.83865 1.03791 1.01770 1.58920 1.09329 1.13559 1.39659
1.22407 1.02676 0.86617 0.94964 1.22257 0.99192 1.01214 0.95268
1.20092 1.04274 0.93778 0.87406 0.86006 1.24185 0.84050 0.72228
0.88949 1.90549 1.20512 1.47667 1.84318 1.86690 1.40213 1.79396
1.18819 1.23115 0.96455 0.99438 0.79058 1.19250 0.95724 0.92794
0.96131 1.20378 0.92816 0.89098 1.48969 0.93586 1.25344 0.99855
0.95966 0.94079 1.69984 1.36178 0.99440 1.50798 0.86439 0.83422
0.77101 0.77960 1.21474 1.22166 1.17412 1.23206 1.00948 1.04380
0.93188 1.22889 0.99393 0.95710 1.01859 1.19497 1.05829 0.93066
0.95204 1.21288 0.99236 0.95445 0.98266 1.21241 1.01556 0.94196
0.99736 1.21360 0.96167 1.01494 0.92078 1.21329 1.01578 0.90859
1.00230 1.18582 0.97256 0.93719 0.88161 0.96172 0.87729 0.90195
0.89107 0.85752 0.87859 0.91036 0.90408 0.93864 0.92369 0.88450
0.88999 0.89502 0.88048 0.88898 0.86386 0.82312 0.82307
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.43 9.22 127.69 1.18 1.61 16
2 N -0.50 -10.55 4.74 -720.66 -3.42 -13.97 16
3 C 0.06 1.09 5.82 86.52 0.50 1.59 16
4 C -0.14 -3.34 5.18 30.74 0.16 -3.18 16
5 C -0.04 -1.19 2.76 -12.24 -0.03 -1.22 16
6 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16
7 C 0.46 19.02 6.01 71.23 0.43 19.44 16
8 O -0.54 -23.81 15.65 21.94 0.34 -23.47 16
9 O -0.34 -15.59 9.09 -51.40 -0.47 -16.05 16
10 C 0.09 4.24 4.15 71.98 0.30 4.54 16
11 C -0.04 -1.79 1.56 -52.93 -0.08 -1.88 16
12 C -0.48 -27.09 9.37 25.60 0.24 -26.85 16
13 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16
14 C 0.05 2.76 5.43 84.65 0.46 3.22 16
15 N -0.93 -56.93 13.96 21.45 0.30 -56.63 16
16 Si 0.92 47.29 24.10 68.60 1.65 48.94 16
17 H -0.29 -15.15 7.01 99.48 0.70 -14.45 16
18 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16
19 H -0.25 -11.97 6.40 99.48 0.64 -11.33 16
20 C -0.18 -7.06 9.96 30.62 0.30 -6.75 16
21 C -0.16 -6.24 9.94 30.62 0.30 -5.94 16
22 C -0.13 -4.59 5.40 -19.71 -0.11 -4.70 16
23 C -0.12 -5.02 9.07 22.32 0.20 -4.82 16
24 C -0.15 -5.22 10.05 22.25 0.22 -5.00 16
25 C -0.09 -2.44 10.04 22.19 0.22 -2.22 16
26 C -0.12 -2.95 9.29 22.50 0.21 -2.74 16
27 C 0.12 3.31 5.12 38.30 0.20 3.50 16
28 H 0.02 0.43 6.60 -2.39 -0.02 0.42 16
29 H 0.10 1.21 8.05 -2.39 -0.02 1.19 16
30 H 0.08 1.27 7.70 -2.39 -0.02 1.26 16
31 H 0.09 1.60 8.11 -2.39 -0.02 1.58 16
32 H 0.12 1.42 7.98 -2.39 -0.02 1.40 16
33 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
34 H 0.07 1.93 5.77 -2.38 -0.01 1.92 16
35 H 0.08 3.18 7.94 -2.39 -0.02 3.16 16
36 H 0.04 2.15 2.43 -2.39 -0.01 2.15 16
37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16
38 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16
39 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16
40 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16
41 H 0.10 3.35 8.14 -2.39 -0.02 3.34 16
42 H 0.09 4.57 6.68 -2.91 -0.02 4.55 16
43 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16
44 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16
45 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16
Total: -1.00 -72.20 357.06 4.03 -68.18
By element:
Atomic # 1 Polarization: 23.47 SS G_CDS: 0.91 Total: 24.38 kcal
Atomic # 6 Polarization: -36.09 SS G_CDS: 4.71 Total: -31.38 kcal
Atomic # 7 Polarization: -67.48 SS G_CDS: -3.12 Total: -70.60 kcal
Atomic # 8 Polarization: -39.40 SS G_CDS: -0.12 Total: -39.52 kcal
Atomic # 14 Polarization: 47.29 SS G_CDS: 1.65 Total: 48.94 kcal
Total: -72.20 4.03 -68.18 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000849766990.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.540 kcal
(2) G-P(sol) polarization free energy of solvation -72.202 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.663 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.636 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds