Wall clock time and date at job start Tue Mar 31 2020 10:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20761 * 120.00093 * 2 1 4 4 C 1.50704 * 119.99912 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.58407 * 359.36064 * 4 2 1 6 6 C 1.53192 * 109.70229 * 119.71118 * 4 2 1 7 7 C 1.53032 * 109.31679 * 174.49348 * 6 4 2 8 8 C 1.53043 * 109.53827 * 298.64053 * 7 6 4 9 9 C 1.52755 * 109.38465 * 61.23309 * 8 7 6 10 10 N 1.46922 * 109.58776 * 239.07379 * 4 2 1 11 11 C 1.34776 * 120.63333 * 6.43790 * 10 4 2 12 12 O 1.21277 * 119.99842 * 354.19808 * 11 10 4 13 13 C 1.50694 * 119.99844 * 174.19685 * 11 10 4 14 14 C 1.50701 * 109.46809 * 180.02562 * 13 11 10 15 15 C 1.37643 * 120.12748 * 265.00002 * 14 13 11 16 16 C 1.38610 * 120.24882 * 180.02562 * 15 14 13 17 17 C 1.38660 * 120.50292 * 359.97438 * 16 15 14 18 18 C 1.37598 * 120.24609 * 0.02562 * 17 16 15 19 19 C 1.40696 * 120.13072 * 85.02345 * 14 13 11 20 20 C 1.41393 * 120.24105 * 359.95256 * 19 14 13 21 21 H 1.07998 * 120.00086 * 338.79695 * 20 19 14 22 22 C 1.39946 * 119.99904 * 158.79277 * 20 19 14 23 23 N 1.30823 * 120.00164 * 340.79026 * 22 20 19 24 24 Si 1.86804 * 120.00282 * 160.79035 * 22 20 19 25 25 H 1.48499 * 109.46861 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46928 * 119.99715 * 24 22 20 27 27 H 1.48499 * 109.47390 * 240.00202 * 24 22 20 28 28 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47358 * 300.00782 * 1 2 3 30 30 H 1.09006 * 109.47083 * 60.00776 * 1 2 3 31 31 H 1.09002 * 109.49941 * 294.44584 * 6 4 2 32 32 H 1.09007 * 109.49437 * 54.50993 * 6 4 2 33 33 H 1.08999 * 109.45914 * 58.65459 * 7 6 4 34 34 H 1.08994 * 109.46313 * 178.63089 * 7 6 4 35 35 H 1.09001 * 109.49967 * 181.31500 * 8 7 6 36 36 H 1.09003 * 109.49259 * 301.37437 * 8 7 6 37 37 H 1.09006 * 109.51134 * 185.70655 * 9 8 7 38 38 H 1.09004 * 109.43422 * 65.42988 * 9 8 7 39 39 H 1.08997 * 109.47201 * 60.00486 * 13 11 10 40 40 H 1.09000 * 109.47365 * 300.00063 * 13 11 10 41 41 H 1.08004 * 119.87365 * 359.97438 * 15 14 13 42 42 H 1.08003 * 119.75094 * 180.02562 * 16 15 14 43 43 H 1.08000 * 119.87516 * 179.74828 * 17 16 15 44 44 H 1.07999 * 120.12526 * 179.97438 * 18 17 16 45 45 H 0.97007 * 120.00383 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 1 1.5538 -2.1350 0.0124 6 6 3.1377 -1.3956 -1.2520 7 6 4.0005 -2.6572 -1.1758 8 6 4.9143 -2.5791 0.0494 9 6 4.0611 -2.4991 1.3140 10 7 3.1228 -1.3755 1.1880 11 6 3.0584 -0.4245 2.1408 12 8 2.3616 0.5541 1.9747 13 6 3.8522 -0.5772 3.4126 14 6 3.6058 0.6124 4.3044 15 6 4.4702 1.6833 4.2822 16 6 4.2463 2.7785 5.1017 17 6 3.1512 2.8094 5.9517 18 6 2.2739 1.7500 5.9905 19 6 2.4915 0.6325 5.1632 20 6 1.5965 -0.4616 5.1942 21 1 1.5471 -1.1427 4.3576 22 6 0.7746 -0.6619 6.3090 23 7 1.0737 -0.0995 7.4517 24 14 -0.7496 -1.7323 6.1656 25 1 -0.8633 -2.2482 4.7778 26 1 -0.6438 -2.8733 7.1102 27 1 -1.9530 -0.9269 6.4949 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 2.5039 -1.4413 -2.1376 32 1 3.7809 -0.5174 -1.3099 33 1 3.3567 -3.5329 -1.0933 34 1 4.6080 -2.7367 -2.0772 35 1 5.5450 -3.4672 0.0901 36 1 5.5416 -1.6904 -0.0207 37 1 4.7058 -2.3416 2.1787 38 1 3.5044 -3.4283 1.4352 39 1 4.9138 -0.6385 3.1732 40 1 3.5426 -1.4869 3.9272 41 1 5.3267 1.6698 3.6243 42 1 4.9296 3.6146 5.0775 43 1 2.9887 3.6661 6.5888 44 1 1.4218 1.7760 6.6535 45 1 0.5038 -0.2380 8.2244 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854725351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:00 Heat of formation + Delta-G solvation = -64.144080 kcal Electronic energy + Delta-G solvation = -27513.031183 eV Core-core repulsion = 23880.641445 eV Total energy + Delta-G solvation = -3632.389738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89052 -39.81451 -38.87910 -38.13032 -35.54464 -34.07486 -33.33727 -32.61794 -31.34468 -30.61622 -28.70393 -27.04742 -26.06806 -24.60087 -22.87573 -22.55271 -21.30701 -20.90779 -19.61767 -19.05692 -18.00611 -17.38721 -17.07541 -16.73935 -16.30806 -16.13085 -15.75180 -15.53233 -15.34795 -15.24343 -14.83640 -14.71415 -14.44416 -14.35732 -14.02920 -13.71656 -13.48323 -13.37011 -13.07267 -12.95111 -12.88652 -12.71810 -12.64437 -12.49612 -12.42309 -12.10801 -12.02450 -11.71444 -11.57174 -11.34666 -11.21697 -10.99439 -10.43657 -10.19064 -9.56583 -9.28160 -9.18170 -8.61857 -6.28560 0.96145 1.08184 1.19421 1.35588 1.49429 1.53371 1.83594 2.18870 2.23186 2.75613 3.05602 3.69492 3.82376 3.89092 4.08314 4.11451 4.12453 4.26993 4.30360 4.34734 4.37890 4.51806 4.57403 4.60592 4.66783 4.68984 4.71068 4.77288 4.90697 4.91794 5.00223 5.10039 5.12072 5.15758 5.17643 5.24024 5.36951 5.46689 5.54415 5.65677 5.74645 6.02651 6.15017 6.20628 6.39700 6.43022 6.72208 6.85578 6.97794 7.10468 7.42659 8.33491 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.005297 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.192423 B = 5284.972729 C = 6020.730733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.354 3.646 3 O -0.479 6.479 4 C 0.091 3.909 5 H 0.120 0.880 6 C -0.118 4.118 7 C -0.110 4.110 8 C -0.133 4.133 9 C 0.100 3.900 10 N -0.610 5.610 11 C 0.505 3.495 12 O -0.546 6.546 13 C -0.060 4.060 14 C -0.191 4.191 15 C -0.092 4.092 16 C -0.250 4.250 17 C -0.116 4.116 18 C -0.201 4.201 19 C 0.097 3.903 20 C -0.475 4.475 21 H 0.074 0.926 22 C 0.035 3.965 23 N -0.820 5.820 24 Si 0.972 3.028 25 H -0.256 1.256 26 H -0.259 1.259 27 H -0.271 1.271 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 -12.455 -14.987 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.230 3.770 3 O -0.353 6.353 4 C -0.013 4.013 5 H 0.138 0.862 6 C -0.157 4.157 7 C -0.147 4.147 8 C -0.171 4.171 9 C -0.022 4.022 10 N -0.347 5.347 11 C 0.295 3.705 12 O -0.423 6.423 13 C -0.100 4.100 14 C -0.193 4.193 15 C -0.110 4.110 16 C -0.269 4.269 17 C -0.134 4.134 18 C -0.220 4.220 19 C 0.095 3.905 20 C -0.504 4.504 21 H 0.092 0.908 22 C -0.180 4.180 23 N -0.446 5.446 24 Si 0.793 3.207 25 H -0.180 1.180 26 H -0.184 1.184 27 H -0.196 1.196 28 H 0.125 0.875 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.125 -11.374 -14.819 18.801 hybrid contribution -0.682 0.342 0.615 0.980 sum 1.443 -11.032 -14.205 18.043 Atomic orbital electron populations 1.22205 0.92887 1.05783 1.04063 1.24698 0.92885 0.89844 0.69548 1.90386 1.72450 1.36718 1.35720 1.22027 0.93792 0.98022 0.87416 0.86237 1.21837 0.98555 0.99731 0.95535 1.21498 0.98062 0.96623 0.98547 1.21875 0.98023 1.03230 0.94001 1.21992 0.91589 0.88554 1.00016 1.48196 1.40990 1.26182 1.19365 1.21286 0.82379 0.81621 0.85214 1.90807 1.42078 1.31033 1.78414 1.20231 0.99763 0.98700 0.91281 1.19498 0.97933 0.97520 1.04376 1.20673 0.98483 0.93891 0.97932 1.20646 1.01843 1.00283 1.04146 1.20932 0.95939 0.97702 0.98856 1.21397 1.01224 0.94666 1.04713 1.17728 0.90477 0.92299 0.90044 1.19645 1.18494 1.10032 1.02207 0.90837 1.26756 1.00717 0.96787 0.93716 1.69902 1.36085 1.37499 1.01118 0.85306 0.77211 0.78293 0.79871 1.17965 1.18364 1.19567 0.87519 0.91603 0.87785 0.88514 0.93870 0.89399 0.89780 0.87602 0.93240 0.89196 0.88941 0.88125 0.88308 0.87546 0.87182 0.87807 0.87878 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.17 10.33 71.23 0.74 -4.44 16 2 C 0.35 11.96 4.19 29.10 0.12 12.09 16 3 O -0.48 -21.42 14.75 22.92 0.34 -21.08 16 4 C 0.09 2.32 3.25 44.23 0.14 2.47 16 5 H 0.12 2.25 7.70 -2.39 -0.02 2.23 16 6 C -0.12 -2.33 5.33 30.67 0.16 -2.16 16 7 C -0.11 -1.44 5.89 30.62 0.18 -1.26 16 8 C -0.13 -2.00 6.06 30.53 0.19 -1.82 16 9 C 0.10 1.98 6.29 86.22 0.54 2.52 16 10 N -0.61 -18.11 2.98 -800.02 -2.38 -20.50 16 11 C 0.51 20.69 7.20 87.66 0.63 21.32 16 12 O -0.55 -27.78 11.20 21.35 0.24 -27.54 16 13 C -0.06 -2.44 3.60 29.10 0.10 -2.34 16 14 C -0.19 -9.71 4.43 -19.40 -0.09 -9.80 16 15 C -0.09 -4.49 9.66 22.22 0.21 -4.27 16 16 C -0.25 -12.30 10.05 22.46 0.23 -12.07 16 17 C -0.12 -6.04 10.02 22.22 0.22 -5.82 16 18 C -0.20 -11.50 8.73 22.73 0.20 -11.30 16 19 C 0.10 5.47 5.61 -21.29 -0.12 5.35 16 20 C -0.47 -25.73 8.25 23.46 0.19 -25.54 16 21 H 0.07 3.84 6.54 -2.91 -0.02 3.82 16 22 C 0.04 1.80 5.14 85.26 0.44 2.24 16 23 N -0.82 -43.57 10.83 21.83 0.24 -43.33 16 24 Si 0.97 38.43 29.60 68.60 2.03 40.46 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 27 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 28 H 0.11 2.04 7.70 -2.39 -0.02 2.02 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.13 7.98 -2.38 -0.02 1.11 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.80 5.97 -2.38 -0.01 1.78 16 38 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.10 3.40 7.35 -2.39 -0.02 3.38 16 40 H 0.10 3.87 6.97 -2.39 -0.02 3.86 16 41 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 42 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 43 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 44 H 0.10 6.12 5.97 -2.91 -0.02 6.10 16 45 H 0.29 13.74 8.30 -92.70 -0.77 12.97 16 Total: -1.00 -77.99 358.50 5.54 -72.44 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.99 Total: 34.38 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 4.10 Total: -34.83 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -2.15 Total: -63.83 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: 0.58 Total: -48.62 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -77.99 5.54 -72.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854725351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.298 kcal (2) G-P(sol) polarization free energy of solvation -77.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds