Wall clock time and date at job start Tue Mar 31 2020 11:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35741 * 117.00303 * 2 1 4 4 C 1.39017 * 119.88442 * 180.02562 * 3 2 1 5 5 C 1.37669 * 120.10965 * 179.97438 * 4 3 2 6 6 C 1.39965 * 119.88449 * 0.02562 * 5 4 3 7 7 C 1.47006 * 120.11082 * 180.02562 * 6 5 4 8 8 C 1.34981 * 119.99824 * 132.03216 * 7 6 5 9 9 C 1.46256 * 120.00225 * 349.04084 * 8 7 6 10 10 O 1.21724 * 120.00032 * 352.68511 * 9 8 7 11 11 N 1.34780 * 119.99924 * 172.68057 * 9 8 7 12 12 C 1.46922 * 120.63070 * 354.16777 * 11 9 8 13 13 C 1.53194 * 108.89598 * 233.56001 * 12 11 9 14 14 C 1.53070 * 109.29305 * 305.58375 * 13 12 11 15 15 C 1.53034 * 109.66100 * 61.15153 * 14 13 12 16 16 H 1.08996 * 109.49917 * 58.65140 * 15 14 13 17 17 C 1.50704 * 109.49975 * 178.74978 * 15 14 13 18 18 H 1.08003 * 119.99767 * 5.46182 * 17 15 14 19 19 C 1.37878 * 120.00374 * 185.46699 * 17 15 14 20 20 N 1.31513 * 119.99456 * 5.38229 * 19 17 15 21 21 Si 1.86800 * 119.99878 * 185.38386 * 19 17 15 22 22 H 1.48504 * 109.46971 * 94.99948 * 21 19 17 23 23 H 1.48504 * 109.46744 * 214.99520 * 21 19 17 24 24 H 1.48497 * 109.47437 * 334.99601 * 21 19 17 25 25 C 1.46922 * 120.62589 * 174.19547 * 11 9 8 26 26 C 1.39970 * 119.77872 * 0.27632 * 6 5 4 27 27 C 1.37672 * 119.88029 * 359.42112 * 26 6 5 28 28 H 1.09000 * 109.47592 * 59.99609 * 1 2 3 29 29 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46688 * 299.99265 * 1 2 3 31 31 H 1.07995 * 119.94521 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.05417 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.00015 * 312.02450 * 7 6 5 34 34 H 1.07996 * 119.99908 * 169.05417 * 8 7 6 35 35 H 1.09000 * 109.58602 * 353.42096 * 12 11 9 36 36 H 1.09006 * 109.58500 * 113.69778 * 12 11 9 37 37 H 1.08996 * 109.49168 * 65.39010 * 13 12 11 38 38 H 1.09000 * 109.49720 * 185.48642 * 13 12 11 39 39 H 1.09004 * 109.34376 * 301.12247 * 14 13 12 40 40 H 1.09001 * 109.43913 * 181.23700 * 14 13 12 41 41 H 0.97003 * 119.99427 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.58503 * 246.15231 * 25 11 9 43 43 H 1.08994 * 109.59298 * 6.58209 * 25 11 9 44 44 H 1.08000 * 120.06335 * 179.70366 * 26 6 5 45 45 H 1.08002 * 119.93989 * 180.31535 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4337 1.2793 -0.0005 5 6 4.0636 2.5035 -0.0011 6 6 3.3036 3.6788 -0.0005 7 6 3.9710 4.9886 -0.0017 8 6 3.5791 5.9450 -0.8698 9 6 2.6655 5.6113 -1.9621 10 8 2.3636 4.4506 -2.1699 11 7 2.1579 6.5891 -2.7385 12 6 2.4097 8.0018 -2.4235 13 6 1.0691 8.7389 -2.3435 14 6 0.2882 8.5103 -3.6401 15 6 0.0114 7.0158 -3.8178 16 1 -0.5540 6.6462 -2.9624 17 6 -0.7839 6.7980 -5.0793 18 1 -0.9886 7.6284 -5.7387 19 6 -1.2503 5.5386 -5.3915 20 7 -1.0934 4.5494 -4.5392 21 14 -2.1048 5.2375 -7.0251 22 1 -1.1190 4.7308 -8.0134 23 1 -3.1830 4.2329 -6.8418 24 1 -2.6916 6.5092 -7.5186 25 6 1.3417 6.2622 -3.9157 26 6 1.9060 3.6029 0.0064 27 6 1.2858 2.3738 0.0006 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 4.0192 0.3718 -0.0005 32 1 5.1423 2.5567 -0.0019 33 1 4.7749 5.1857 0.6922 34 1 3.9402 6.9566 -0.7579 35 1 2.9254 8.0764 -1.4661 36 1 3.0251 8.4465 -3.2056 37 1 0.4928 8.3553 -1.5016 38 1 1.2478 9.8054 -2.2070 39 1 0.8748 8.8740 -4.4838 40 1 -0.6568 9.0518 -3.5947 41 1 -1.4212 3.6633 -4.7590 42 1 1.8678 6.5658 -4.8208 43 1 1.1526 5.1892 -3.9428 44 1 1.3151 4.5069 0.0117 45 1 0.2074 2.3141 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855258981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:07 Heat of formation + Delta-G solvation = -23.856700 kcal Electronic energy + Delta-G solvation = -26646.718699 eV Core-core repulsion = 23016.075953 eV Total energy + Delta-G solvation = -3630.642746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.99584 -39.32409 -37.52436 -36.38990 -33.44150 -33.06260 -31.73045 -30.77376 -29.92563 -28.96046 -27.04796 -25.22159 -24.85731 -23.00229 -22.07518 -21.80330 -20.88490 -19.21616 -18.04180 -17.75144 -17.12675 -16.19972 -15.86257 -15.54295 -15.41459 -14.62726 -14.51685 -14.22362 -13.98160 -13.74933 -13.66176 -13.41227 -13.07277 -12.84421 -12.66452 -12.50066 -12.28956 -12.07706 -11.85088 -11.83106 -11.33385 -11.05857 -10.96126 -10.82748 -10.57936 -10.53459 -10.36318 -10.23844 -9.86834 -9.37241 -9.26318 -9.05357 -8.87172 -8.58546 -8.41458 -7.65426 -7.45893 -6.00957 -4.07064 1.09836 1.75736 2.15267 3.30299 3.38178 3.40076 3.46374 3.82594 3.90722 4.13009 4.43406 4.92650 5.00953 5.08238 5.17875 5.25715 5.29075 5.30997 5.33738 5.52193 5.54504 5.55786 5.61622 5.68299 5.72669 5.97734 5.99834 6.16910 6.19166 6.27728 6.31781 6.40528 6.58254 6.62512 6.66963 6.72707 6.85219 6.92245 6.97405 7.02055 7.16346 7.30862 7.62403 7.64732 7.86290 7.98624 8.29291 8.39477 8.95110 8.99991 9.57766 11.06044 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.004773 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.664481 B = 5864.312368 C = 7915.741079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.322 6.322 3 C 0.132 3.868 4 C -0.166 4.166 5 C -0.067 4.067 6 C -0.098 4.098 7 C -0.034 4.034 8 C -0.208 4.208 9 C 0.527 3.473 10 O -0.523 6.523 11 N -0.603 5.603 12 C 0.109 3.891 13 C -0.134 4.134 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.034 0.966 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.877 5.877 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.118 3.882 26 C 0.000 4.000 27 C -0.205 4.205 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.261 0.739 42 H 0.041 0.959 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 -0.021 11.955 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.236 6.236 3 C 0.087 3.913 4 C -0.185 4.185 5 C -0.085 4.085 6 C -0.098 4.098 7 C -0.054 4.054 8 C -0.229 4.229 9 C 0.316 3.684 10 O -0.402 6.402 11 N -0.335 5.335 12 C -0.015 4.015 13 C -0.172 4.172 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.052 0.948 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.514 5.514 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.003 4.003 26 C -0.018 4.018 27 C -0.224 4.224 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.707 -1.025 11.834 14.728 hybrid contribution -0.739 0.183 -1.121 1.355 sum 7.968 -0.842 10.713 13.378 Atomic orbital electron populations 1.23044 0.78457 1.03495 1.01811 1.85962 1.21403 1.27459 1.88740 1.19129 0.92275 0.83895 0.96048 1.20108 0.91136 0.98211 1.09020 1.20846 0.98929 0.90830 0.97915 1.18706 0.93219 0.92599 1.05319 1.22235 0.95683 0.91715 0.95726 1.23281 1.02586 0.99674 0.97367 1.18364 0.81190 0.85732 0.83119 1.90907 1.59790 1.18640 1.70829 1.48431 1.51028 1.05034 1.28990 1.21660 0.97332 0.82346 1.00155 1.21952 0.96375 0.98579 1.00271 1.21631 0.98312 1.00277 0.94590 1.18954 0.92145 0.88826 0.97953 0.94818 1.21064 1.33950 0.94260 1.06780 0.92469 1.25034 0.95678 0.96441 0.96692 1.69969 1.45851 1.01258 1.34319 0.86643 0.79312 0.78015 0.84434 1.20681 1.21271 1.19886 1.22148 0.90733 1.04627 0.82762 1.20840 0.93061 0.96785 0.91139 1.21047 0.99901 0.92222 1.09254 0.92110 0.88604 0.92821 0.85800 0.85849 0.85300 0.85323 0.90944 0.92274 0.92199 0.92253 0.93344 0.93028 0.92861 0.94086 0.87325 0.86595 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.95 10.49 -18.93 -0.20 -5.15 16 3 C 0.13 2.17 6.70 -39.00 -0.26 1.91 16 4 C -0.17 -2.52 9.97 -39.50 -0.39 -2.92 16 5 C -0.07 -0.97 9.79 -39.14 -0.38 -1.35 16 6 C -0.10 -1.55 4.33 -105.05 -0.46 -2.00 16 7 C -0.03 -0.45 9.77 -37.19 -0.36 -0.81 16 8 C -0.21 -3.01 9.12 -37.52 -0.34 -3.35 16 9 C 0.53 10.33 6.81 -13.04 -0.09 10.24 16 10 O -0.52 -12.26 11.92 5.17 0.06 -12.20 16 11 N -0.60 -11.88 2.97 -174.47 -0.52 -12.40 16 12 C 0.11 1.66 6.29 -3.71 -0.02 1.63 16 13 C -0.13 -2.12 6.09 -26.59 -0.16 -2.28 16 14 C -0.11 -2.18 5.10 -26.68 -0.14 -2.32 16 15 C 0.04 0.99 2.12 -91.65 -0.19 0.80 16 16 H 0.03 0.93 8.12 -51.93 -0.42 0.51 16 17 C -0.52 -14.13 8.49 -34.44 -0.29 -14.43 16 18 H 0.06 1.52 7.75 -52.48 -0.41 1.12 16 19 C 0.06 1.80 5.29 -17.82 -0.09 1.70 16 20 N -0.88 -25.57 12.03 55.43 0.67 -24.90 16 21 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 25 C 0.12 2.82 5.49 -3.71 -0.02 2.80 16 26 C 0.00 0.00 6.78 -39.14 -0.27 -0.26 16 27 C -0.21 -3.54 9.01 -39.50 -0.36 -3.89 16 28 H 0.06 0.80 7.65 -51.93 -0.40 0.40 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 31 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.43 6.11 -52.49 -0.32 1.11 16 35 H 0.07 0.88 5.47 -51.93 -0.28 0.59 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.11 3.06 5.75 -51.93 -0.30 2.76 16 44 H 0.12 2.11 7.46 -52.49 -0.39 1.72 16 45 H 0.13 2.02 6.27 -52.49 -0.33 1.69 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -32.44 360.94 -9.02 -41.46 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.61 Total: 4.65 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -2.84 Total: -13.21 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.15 Total: -37.30 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.14 Total: -17.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.44 -9.02 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855258981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.607 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds