Wall clock time and date at job start Tue Mar 31 2020 11:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35741 * 117.00303 * 2 1 4 4 C 1.39017 * 119.88442 * 180.02562 * 3 2 1 5 5 C 1.37669 * 120.10965 * 179.97438 * 4 3 2 6 6 C 1.39965 * 119.88449 * 0.02562 * 5 4 3 7 7 C 1.47006 * 120.11082 * 180.02562 * 6 5 4 8 8 C 1.34981 * 119.99824 * 132.03216 * 7 6 5 9 9 C 1.46256 * 120.00225 * 349.04084 * 8 7 6 10 10 O 1.21724 * 120.00032 * 352.68511 * 9 8 7 11 11 N 1.34780 * 119.99924 * 172.68057 * 9 8 7 12 12 C 1.46922 * 120.63070 * 354.16777 * 11 9 8 13 13 C 1.53194 * 108.89598 * 233.56001 * 12 11 9 14 14 C 1.53070 * 109.29305 * 305.58375 * 13 12 11 15 15 C 1.53034 * 109.66100 * 61.15153 * 14 13 12 16 16 H 1.08996 * 109.49917 * 58.65140 * 15 14 13 17 17 C 1.50704 * 109.49975 * 178.74978 * 15 14 13 18 18 H 1.08003 * 119.99767 * 5.46182 * 17 15 14 19 19 C 1.37878 * 120.00374 * 185.46699 * 17 15 14 20 20 N 1.31513 * 119.99456 * 5.38229 * 19 17 15 21 21 Si 1.86800 * 119.99878 * 185.38386 * 19 17 15 22 22 H 1.48504 * 109.46971 * 94.99948 * 21 19 17 23 23 H 1.48504 * 109.46744 * 214.99520 * 21 19 17 24 24 H 1.48497 * 109.47437 * 334.99601 * 21 19 17 25 25 C 1.46922 * 120.62589 * 174.19547 * 11 9 8 26 26 C 1.39970 * 119.77872 * 0.27632 * 6 5 4 27 27 C 1.37672 * 119.88029 * 359.42112 * 26 6 5 28 28 H 1.09000 * 109.47592 * 59.99609 * 1 2 3 29 29 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46688 * 299.99265 * 1 2 3 31 31 H 1.07995 * 119.94521 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.05417 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.00015 * 312.02450 * 7 6 5 34 34 H 1.07996 * 119.99908 * 169.05417 * 8 7 6 35 35 H 1.09000 * 109.58602 * 353.42096 * 12 11 9 36 36 H 1.09006 * 109.58500 * 113.69778 * 12 11 9 37 37 H 1.08996 * 109.49168 * 65.39010 * 13 12 11 38 38 H 1.09000 * 109.49720 * 185.48642 * 13 12 11 39 39 H 1.09004 * 109.34376 * 301.12247 * 14 13 12 40 40 H 1.09001 * 109.43913 * 181.23700 * 14 13 12 41 41 H 0.97003 * 119.99427 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.58503 * 246.15231 * 25 11 9 43 43 H 1.08994 * 109.59298 * 6.58209 * 25 11 9 44 44 H 1.08000 * 120.06335 * 179.70366 * 26 6 5 45 45 H 1.08002 * 119.93989 * 180.31535 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 3.4337 1.2793 -0.0005 5 6 4.0636 2.5035 -0.0011 6 6 3.3036 3.6788 -0.0005 7 6 3.9710 4.9886 -0.0017 8 6 3.5791 5.9450 -0.8698 9 6 2.6655 5.6113 -1.9621 10 8 2.3636 4.4506 -2.1699 11 7 2.1579 6.5891 -2.7385 12 6 2.4097 8.0018 -2.4235 13 6 1.0691 8.7389 -2.3435 14 6 0.2882 8.5103 -3.6401 15 6 0.0114 7.0158 -3.8178 16 1 -0.5540 6.6462 -2.9624 17 6 -0.7839 6.7980 -5.0793 18 1 -0.9886 7.6284 -5.7387 19 6 -1.2503 5.5386 -5.3915 20 7 -1.0934 4.5494 -4.5392 21 14 -2.1048 5.2375 -7.0251 22 1 -1.1190 4.7308 -8.0134 23 1 -3.1830 4.2329 -6.8418 24 1 -2.6916 6.5092 -7.5186 25 6 1.3417 6.2622 -3.9157 26 6 1.9060 3.6029 0.0064 27 6 1.2858 2.3738 0.0006 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 4.0192 0.3718 -0.0005 32 1 5.1423 2.5567 -0.0019 33 1 4.7749 5.1857 0.6922 34 1 3.9402 6.9566 -0.7579 35 1 2.9254 8.0764 -1.4661 36 1 3.0251 8.4465 -3.2056 37 1 0.4928 8.3553 -1.5016 38 1 1.2478 9.8054 -2.2070 39 1 0.8748 8.8740 -4.4838 40 1 -0.6568 9.0518 -3.5947 41 1 -1.4212 3.6633 -4.7590 42 1 1.8678 6.5658 -4.8208 43 1 1.1526 5.1892 -3.9428 44 1 1.3151 4.5069 0.0117 45 1 0.2074 2.3141 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855258981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:06 Heat of formation + Delta-G solvation = -43.216386 kcal Electronic energy + Delta-G solvation = -26647.558198 eV Core-core repulsion = 23016.075953 eV Total energy + Delta-G solvation = -3631.482245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.29391 -40.70031 -38.85639 -37.85208 -35.27728 -34.34279 -33.39421 -32.00202 -31.63258 -30.18693 -28.17864 -27.11447 -26.36446 -24.35377 -23.46385 -23.22596 -22.24210 -20.81756 -19.33143 -19.08986 -18.57128 -18.11212 -17.09108 -16.85751 -16.68024 -16.55460 -15.93955 -15.64677 -15.29670 -15.15403 -14.97981 -14.62709 -14.49856 -14.34452 -14.25979 -13.93531 -13.71684 -13.45685 -13.43533 -12.91176 -12.87490 -12.71508 -12.49541 -12.33317 -12.25724 -12.06696 -11.82600 -11.71095 -11.59837 -11.10307 -10.88206 -10.56652 -10.49952 -10.44163 -9.86686 -9.25372 -8.68824 -8.15215 -6.28967 -0.07715 0.51743 0.95540 1.36279 1.37697 1.48196 2.33470 2.35988 2.42610 2.50886 2.90409 3.15787 3.82447 3.84357 3.89809 3.97092 4.12887 4.21091 4.25627 4.28979 4.34065 4.40905 4.53339 4.53908 4.61802 4.64196 4.77860 4.79586 4.84684 4.88072 5.07158 5.09627 5.12745 5.21426 5.25300 5.29879 5.34625 5.44385 5.52358 5.55426 5.67138 5.76178 5.86082 5.90489 5.94735 6.32966 6.42483 6.80421 6.84812 7.39898 7.50371 8.90373 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.004773 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.664481 B = 5864.312368 C = 7915.741079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.331 6.331 3 C 0.115 3.885 4 C -0.173 4.173 5 C -0.063 4.063 6 C -0.112 4.112 7 C -0.012 4.012 8 C -0.217 4.217 9 C 0.513 3.487 10 O -0.576 6.576 11 N -0.610 5.610 12 C 0.103 3.897 13 C -0.126 4.126 14 C -0.106 4.106 15 C 0.040 3.960 16 H -0.013 1.013 17 C -0.536 4.536 18 H 0.060 0.940 19 C 0.011 3.989 20 N -0.913 5.913 21 Si 0.953 3.047 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.260 1.260 25 C 0.134 3.866 26 C -0.021 4.021 27 C -0.229 4.229 28 H 0.040 0.960 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.146 0.854 32 H 0.163 0.837 33 H 0.185 0.815 34 H 0.174 0.826 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.257 0.743 42 H 0.036 0.964 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 1.852 12.904 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.245 6.245 3 C 0.070 3.930 4 C -0.191 4.191 5 C -0.081 4.081 6 C -0.112 4.112 7 C -0.031 4.031 8 C -0.237 4.237 9 C 0.305 3.695 10 O -0.458 6.458 11 N -0.341 5.341 12 C -0.018 4.018 13 C -0.164 4.164 14 C -0.143 4.143 15 C 0.021 3.979 16 H 0.005 0.995 17 C -0.575 4.575 18 H 0.078 0.922 19 C -0.188 4.188 20 N -0.551 5.551 21 Si 0.778 3.222 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.184 1.184 25 C 0.011 3.989 26 C -0.039 4.039 27 C -0.247 4.247 28 H 0.059 0.941 29 H 0.146 0.854 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.202 0.798 34 H 0.191 0.809 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.448 0.903 12.795 17.192 hybrid contribution -1.637 -0.450 -1.392 2.195 sum 9.811 0.453 11.403 15.050 Atomic orbital electron populations 1.23243 0.77121 1.05419 1.01386 1.85939 1.22850 1.27015 1.88718 1.19378 0.93184 0.83867 0.96577 1.20535 0.90711 0.99716 1.08175 1.21307 1.00774 0.89878 0.96152 1.19110 0.92534 0.94897 1.04681 1.22737 0.95431 0.89468 0.95488 1.23286 1.01996 1.02183 0.96238 1.19368 0.81220 0.84936 0.83951 1.90889 1.61694 1.20881 1.72301 1.48464 1.50413 1.07512 1.27761 1.22032 0.97479 0.79224 1.03072 1.21921 0.95943 1.01443 0.97136 1.21521 0.99185 0.96171 0.97470 1.18864 0.91658 0.92399 0.94997 0.99526 1.21519 1.33934 0.94316 1.07702 0.92151 1.25866 0.96626 0.96319 1.00010 1.70157 1.47227 1.01433 1.36309 0.85624 0.78156 0.78230 0.80190 1.20357 1.21281 1.18423 1.21483 0.91301 1.01349 0.84746 1.20820 0.94436 0.95939 0.92721 1.21139 0.99955 0.93059 1.10584 0.94101 0.85437 0.91748 0.83591 0.81937 0.79819 0.80922 0.86649 0.90345 0.93460 0.87730 0.92488 0.93365 0.93413 0.94613 0.92420 0.88730 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.33 -10.49 10.49 -90.65 -0.95 -11.44 16 3 C 0.12 3.94 6.70 22.64 0.15 4.09 16 4 C -0.17 -5.12 9.97 22.32 0.22 -4.90 16 5 C -0.06 -1.71 9.79 22.55 0.22 -1.49 16 6 C -0.11 -3.41 4.33 -20.14 -0.09 -3.50 16 7 C -0.01 -0.27 9.77 23.82 0.23 -0.04 16 8 C -0.22 -5.57 9.12 23.61 0.22 -5.36 16 9 C 0.51 20.19 6.81 86.33 0.59 20.78 16 10 O -0.58 -28.40 11.92 -4.43 -0.05 -28.46 16 11 N -0.61 -24.05 2.97 -824.09 -2.45 -26.50 16 12 C 0.10 2.82 6.29 86.36 0.54 3.36 16 13 C -0.13 -3.69 6.09 30.68 0.19 -3.50 16 14 C -0.11 -4.13 5.10 30.63 0.16 -3.97 16 15 C 0.04 2.06 2.12 -11.46 -0.02 2.03 16 16 H -0.01 -0.81 8.12 -2.39 -0.02 -0.83 16 17 C -0.54 -30.12 8.49 25.60 0.22 -29.90 16 18 H 0.06 3.27 7.75 -2.91 -0.02 3.24 16 19 C 0.01 0.66 5.29 84.66 0.45 1.10 16 20 N -0.91 -56.78 12.03 21.45 0.26 -56.52 16 21 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 25 C 0.13 6.74 5.49 86.37 0.47 7.21 16 26 C -0.02 -0.77 6.78 22.56 0.15 -0.61 16 27 C -0.23 -8.49 9.01 22.32 0.20 -8.28 16 28 H 0.04 1.18 7.65 -2.39 -0.02 1.16 16 29 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.06 1.46 7.65 -2.39 -0.02 1.45 16 31 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 32 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.17 2.83 6.11 -2.91 -0.02 2.81 16 35 H 0.12 2.18 5.47 -2.39 -0.01 2.17 16 36 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.06 3.50 5.75 -2.39 -0.01 3.48 16 44 H 0.09 3.76 7.46 -2.91 -0.02 3.74 16 45 H 0.12 4.29 6.27 -2.91 -0.02 4.27 16 Total: -1.00 -79.39 360.94 4.82 -74.57 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.98 Total: 22.43 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 5.01 Total: -21.28 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.19 Total: -83.02 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.00 Total: -39.90 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -79.39 4.82 -74.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855258981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.356 kcal (2) G-P(sol) polarization free energy of solvation -79.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds