Wall clock time and date at job start Tue Mar 31 2020 11:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35739 * 116.99869 * 2 1 4 4 C 1.39014 * 119.88317 * 179.97438 * 3 2 1 5 5 C 1.37667 * 120.11331 * 179.97438 * 4 3 2 6 6 C 1.39970 * 119.88336 * 0.03038 * 5 4 3 7 7 C 1.46999 * 120.10877 * 179.97438 * 6 5 4 8 8 C 1.34987 * 119.99861 * 179.97438 * 7 6 5 9 9 C 1.46255 * 120.00114 * 179.97438 * 8 7 6 10 10 O 1.21724 * 119.99764 * 5.22192 * 9 8 7 11 11 N 1.34770 * 119.99871 * 185.21645 * 9 8 7 12 12 C 1.46924 * 120.63287 * 354.88548 * 11 9 8 13 13 C 1.53195 * 108.77532 * 126.43480 * 12 11 9 14 14 C 1.53036 * 109.31381 * 54.63366 * 13 12 11 15 15 C 1.53041 * 109.54265 * 298.63787 * 14 13 12 16 16 H 1.09005 * 109.49181 * 301.38097 * 15 14 13 17 17 C 1.50697 * 109.50073 * 181.31505 * 15 14 13 18 18 H 1.07994 * 119.99998 * 0.06469 * 17 15 14 19 19 C 1.37878 * 119.99877 * 179.78521 * 17 15 14 20 20 N 1.31518 * 119.99921 * 0.28211 * 19 17 15 21 21 Si 1.86804 * 119.99886 * 180.27404 * 19 17 15 22 22 H 1.48502 * 109.46925 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46726 * 120.00411 * 21 19 17 24 24 H 1.48497 * 109.47070 * 240.00496 * 21 19 17 25 25 C 1.46938 * 120.60360 * 174.90817 * 11 9 8 26 26 C 1.39964 * 119.77660 * 0.26923 * 6 5 4 27 27 C 1.37667 * 119.88310 * 359.44739 * 26 6 5 28 28 H 1.08996 * 109.47281 * 300.00371 * 1 2 3 29 29 H 1.09004 * 109.47007 * 59.99746 * 1 2 3 30 30 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.94906 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.05697 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.00688 * 0.02562 * 7 6 5 34 34 H 1.07996 * 119.99761 * 0.02562 * 8 7 6 35 35 H 1.09003 * 109.58598 * 6.64773 * 12 11 9 36 36 H 1.08997 * 109.58710 * 246.21831 * 12 11 9 37 37 H 1.09006 * 109.49605 * 294.68223 * 13 12 11 38 38 H 1.08994 * 109.49884 * 174.59059 * 13 12 11 39 39 H 1.08998 * 109.46218 * 178.61495 * 14 13 12 40 40 H 1.09004 * 109.44573 * 58.64943 * 14 13 12 41 41 H 0.96998 * 119.99429 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.55973 * 113.76373 * 25 11 9 43 43 H 1.08997 * 109.61407 * 353.33679 * 25 11 9 44 44 H 1.07994 * 120.05995 * 179.72543 * 26 6 5 45 45 H 1.07998 * 119.94480 * 180.27061 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.4336 1.2794 0.0005 5 6 4.0635 2.5035 0.0000 6 6 3.3035 3.6789 -0.0004 7 6 3.9709 4.9886 -0.0004 8 6 3.2358 6.1208 -0.0014 9 6 3.8998 7.4239 -0.0008 10 8 5.1116 7.4895 -0.0954 11 7 3.1700 8.5520 0.1044 12 6 1.7018 8.4963 0.1067 13 6 1.1825 9.2303 1.3470 14 6 1.7577 10.6482 1.3739 15 6 3.2843 10.5798 1.4569 16 1 3.5757 10.0317 2.3530 17 6 3.8480 11.9762 1.5159 18 1 3.1841 12.8277 1.4972 19 6 5.2110 12.1664 1.5995 20 7 6.0196 11.1294 1.6223 21 14 5.9093 13.8972 1.6803 22 1 4.7982 14.8816 1.6393 23 1 6.6720 14.0647 2.9434 24 1 6.8125 14.1211 0.5231 25 6 3.8281 9.8608 0.2183 26 6 1.9059 3.6030 0.0054 27 6 1.2858 2.3739 0.0000 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0192 0.3719 0.0005 32 1 5.1423 2.5568 0.0000 33 1 5.0495 5.0452 -0.0005 34 1 2.1573 6.0642 -0.0017 35 1 1.3756 7.4566 0.1342 36 1 1.3164 8.9788 -0.7914 37 1 1.4936 8.6944 2.2438 38 1 0.0943 9.2798 1.3115 39 1 1.3703 11.1809 2.2424 40 1 1.4668 11.1752 0.4651 41 1 6.9785 11.2633 1.6807 42 1 3.6165 10.4543 -0.6710 43 1 4.9044 9.7216 0.3197 44 1 1.3151 4.5069 0.0095 45 1 0.2075 2.3141 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855258985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:13 Heat of formation + Delta-G solvation = -33.903512 kcal Electronic energy + Delta-G solvation = -25347.395255 eV Core-core repulsion = 21716.316847 eV Total energy + Delta-G solvation = -3631.078408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39548 -39.39497 -37.92170 -36.66773 -33.64861 -33.22405 -31.72187 -31.37363 -29.97987 -29.25923 -27.51722 -25.28405 -24.88261 -23.51508 -22.52929 -21.82096 -20.80878 -19.19057 -18.55603 -17.99570 -17.24398 -16.27602 -16.17160 -16.08366 -15.41323 -15.04414 -14.71449 -14.47936 -14.28302 -14.05941 -13.68671 -13.64594 -13.24235 -13.11412 -12.81598 -12.60596 -12.32500 -12.25395 -12.13709 -11.86275 -11.66238 -11.61416 -11.02440 -10.97865 -10.81484 -10.48093 -10.34611 -10.22648 -9.88788 -9.83392 -9.29902 -9.28990 -9.10326 -8.84667 -8.42075 -7.98591 -7.64179 -5.98593 -4.07300 0.58419 1.11784 2.08289 2.92914 3.30830 3.39227 3.42214 3.56122 3.78511 3.99514 4.43849 4.44022 4.57314 4.69781 4.72035 4.77005 5.01686 5.04957 5.11478 5.14349 5.25646 5.31573 5.41931 5.49728 5.51799 5.68637 5.78095 5.91971 5.99866 6.06149 6.09804 6.18578 6.32271 6.42605 6.46223 6.61820 6.64913 6.70740 6.88864 6.98777 7.06067 7.19513 7.32872 7.66712 7.89298 8.02106 8.30951 8.40531 8.91986 8.98835 9.58384 11.06890 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.027361 B = 0.002468 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.114876 B =11343.041637 C =12140.078899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.129 3.871 4 C -0.153 4.153 5 C -0.059 4.059 6 C -0.099 4.099 7 C -0.038 4.038 8 C -0.200 4.200 9 C 0.535 3.465 10 O -0.543 6.543 11 N -0.601 5.601 12 C 0.107 3.893 13 C -0.134 4.134 14 C -0.111 4.111 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.520 4.520 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.112 3.888 26 C -0.065 4.065 27 C -0.209 4.209 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.041 0.959 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 -20.116 -3.945 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.084 3.916 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.100 4.100 7 C -0.058 4.058 8 C -0.221 4.221 9 C 0.325 3.675 10 O -0.423 6.423 11 N -0.333 5.333 12 C -0.016 4.016 13 C -0.173 4.173 14 C -0.149 4.149 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.008 4.008 26 C -0.083 4.083 27 C -0.228 4.228 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.140 0.860 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.722 -20.280 -3.987 23.761 hybrid contribution -0.055 1.105 0.092 1.110 sum -11.776 -19.175 -3.895 22.837 Atomic orbital electron populations 1.23081 0.78263 1.03990 1.01542 1.86030 1.21522 1.27099 1.88444 1.19232 0.92408 0.84098 0.95892 1.20359 0.91232 0.98725 1.06857 1.21221 1.00135 0.90589 0.95768 1.19020 0.93026 0.93194 1.04715 1.22248 1.00403 0.89915 0.93237 1.23222 1.00222 0.93071 1.05543 1.18186 0.87092 0.84431 0.77836 1.90813 1.13777 1.87310 1.50403 1.48403 1.05935 1.08322 1.70603 1.21708 0.81232 1.00153 0.98545 1.21959 0.98993 0.98610 0.97709 1.21626 0.99167 0.93503 1.00559 1.18981 0.89051 0.95906 0.94040 0.95341 1.21113 0.91684 0.91637 1.51449 0.92306 1.25067 0.97313 0.96866 0.94863 1.69900 1.03602 1.29011 1.49287 0.86535 0.79072 0.84750 0.77643 1.19798 1.21020 1.20960 1.22288 1.01623 0.78610 0.98251 1.21227 0.93844 0.97298 0.95902 1.21159 1.00089 0.92162 1.09349 0.92486 0.92521 0.88213 0.84939 0.84593 0.84674 0.85658 0.91033 0.92029 0.92108 0.92272 0.93020 0.93182 0.92697 0.94022 0.85953 0.85183 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.95 10.49 -18.92 -0.20 -3.15 16 3 C 0.13 1.30 6.70 -39.00 -0.26 1.04 16 4 C -0.15 -1.52 9.97 -39.50 -0.39 -1.92 16 5 C -0.06 -0.62 9.79 -39.14 -0.38 -1.00 16 6 C -0.10 -1.17 5.87 -105.05 -0.62 -1.78 16 7 C -0.04 -0.54 9.45 -37.19 -0.35 -0.89 16 8 C -0.20 -3.06 8.74 -37.52 -0.33 -3.39 16 9 C 0.54 11.03 7.61 -13.04 -0.10 10.93 16 10 O -0.54 -13.53 15.68 5.17 0.08 -13.45 16 11 N -0.60 -12.28 2.97 -174.46 -0.52 -12.80 16 12 C 0.11 1.67 6.35 -3.71 -0.02 1.64 16 13 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 14 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 15 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -14.18 8.56 -34.44 -0.29 -14.47 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 20 N -0.88 -25.94 11.40 55.43 0.63 -25.31 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.11 2.77 5.39 -3.70 -0.02 2.75 16 26 C -0.06 -0.67 9.40 -39.14 -0.37 -1.04 16 27 C -0.21 -1.95 9.01 -39.50 -0.36 -2.31 16 28 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16 29 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.14 2.01 7.53 -52.48 -0.40 1.62 16 34 H 0.13 1.52 3.86 -52.49 -0.20 1.32 16 35 H 0.07 0.88 5.30 -51.93 -0.28 0.61 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.12 3.53 5.16 -51.93 -0.27 3.26 16 44 H 0.13 1.16 6.16 -52.49 -0.32 0.84 16 45 H 0.13 0.90 6.27 -52.49 -0.33 0.57 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -33.14 363.66 -9.00 -42.14 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.36 Total: 2.26 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.10 Total: -11.55 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.11 Total: -38.11 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.12 Total: -16.60 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.14 -9.00 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855258985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.240 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds