Wall clock time and date at job start Tue Mar 31 2020 11:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35739 * 116.99869 * 2 1 4 4 C 1.39014 * 119.88317 * 179.97438 * 3 2 1 5 5 C 1.37667 * 120.11331 * 179.97438 * 4 3 2 6 6 C 1.39970 * 119.88336 * 0.03038 * 5 4 3 7 7 C 1.46999 * 120.10877 * 179.97438 * 6 5 4 8 8 C 1.34987 * 119.99861 * 179.97438 * 7 6 5 9 9 C 1.46255 * 120.00114 * 179.97438 * 8 7 6 10 10 O 1.21724 * 119.99764 * 5.22192 * 9 8 7 11 11 N 1.34770 * 119.99871 * 185.21645 * 9 8 7 12 12 C 1.46924 * 120.63287 * 354.88548 * 11 9 8 13 13 C 1.53195 * 108.77532 * 126.43480 * 12 11 9 14 14 C 1.53036 * 109.31381 * 54.63366 * 13 12 11 15 15 C 1.53041 * 109.54265 * 298.63787 * 14 13 12 16 16 H 1.09005 * 109.49181 * 301.38097 * 15 14 13 17 17 C 1.50697 * 109.50073 * 181.31505 * 15 14 13 18 18 H 1.07994 * 119.99998 * 0.06469 * 17 15 14 19 19 C 1.37878 * 119.99877 * 179.78521 * 17 15 14 20 20 N 1.31518 * 119.99921 * 0.28211 * 19 17 15 21 21 Si 1.86804 * 119.99886 * 180.27404 * 19 17 15 22 22 H 1.48502 * 109.46925 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46726 * 120.00411 * 21 19 17 24 24 H 1.48497 * 109.47070 * 240.00496 * 21 19 17 25 25 C 1.46938 * 120.60360 * 174.90817 * 11 9 8 26 26 C 1.39964 * 119.77660 * 0.26923 * 6 5 4 27 27 C 1.37667 * 119.88310 * 359.44739 * 26 6 5 28 28 H 1.08996 * 109.47281 * 300.00371 * 1 2 3 29 29 H 1.09004 * 109.47007 * 59.99746 * 1 2 3 30 30 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.94906 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.05697 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.00688 * 0.02562 * 7 6 5 34 34 H 1.07996 * 119.99761 * 0.02562 * 8 7 6 35 35 H 1.09003 * 109.58598 * 6.64773 * 12 11 9 36 36 H 1.08997 * 109.58710 * 246.21831 * 12 11 9 37 37 H 1.09006 * 109.49605 * 294.68223 * 13 12 11 38 38 H 1.08994 * 109.49884 * 174.59059 * 13 12 11 39 39 H 1.08998 * 109.46218 * 178.61495 * 14 13 12 40 40 H 1.09004 * 109.44573 * 58.64943 * 14 13 12 41 41 H 0.96998 * 119.99429 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.55973 * 113.76373 * 25 11 9 43 43 H 1.08997 * 109.61407 * 353.33679 * 25 11 9 44 44 H 1.07994 * 120.05995 * 179.72543 * 26 6 5 45 45 H 1.07998 * 119.94480 * 180.27061 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 3.4336 1.2794 0.0005 5 6 4.0635 2.5035 0.0000 6 6 3.3035 3.6789 -0.0004 7 6 3.9709 4.9886 -0.0004 8 6 3.2358 6.1208 -0.0014 9 6 3.8998 7.4239 -0.0008 10 8 5.1116 7.4895 -0.0954 11 7 3.1700 8.5520 0.1044 12 6 1.7018 8.4963 0.1067 13 6 1.1825 9.2303 1.3470 14 6 1.7577 10.6482 1.3739 15 6 3.2843 10.5798 1.4569 16 1 3.5757 10.0317 2.3530 17 6 3.8480 11.9762 1.5159 18 1 3.1841 12.8277 1.4972 19 6 5.2110 12.1664 1.5995 20 7 6.0196 11.1294 1.6223 21 14 5.9093 13.8972 1.6803 22 1 4.7982 14.8816 1.6393 23 1 6.6720 14.0647 2.9434 24 1 6.8125 14.1211 0.5231 25 6 3.8281 9.8608 0.2183 26 6 1.9059 3.6030 0.0054 27 6 1.2858 2.3739 0.0000 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0192 0.3719 0.0005 32 1 5.1423 2.5568 0.0000 33 1 5.0495 5.0452 -0.0005 34 1 2.1573 6.0642 -0.0017 35 1 1.3756 7.4566 0.1342 36 1 1.3164 8.9788 -0.7914 37 1 1.4936 8.6944 2.2438 38 1 0.0943 9.2798 1.3115 39 1 1.3703 11.1809 2.2424 40 1 1.4668 11.1752 0.4651 41 1 6.9785 11.2633 1.6807 42 1 3.6165 10.4543 -0.6710 43 1 4.9044 9.7216 0.3197 44 1 1.3151 4.5069 0.0095 45 1 0.2075 2.3141 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855258985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:12 Heat of formation + Delta-G solvation = -53.661427 kcal Electronic energy + Delta-G solvation = -25348.252022 eV Core-core repulsion = 21716.316847 eV Total energy + Delta-G solvation = -3631.935176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.18758 -40.87516 -38.76580 -38.24863 -35.33750 -34.55235 -33.40985 -32.11314 -31.62493 -30.25104 -28.16906 -27.11766 -26.37084 -24.57754 -23.50168 -23.33202 -21.99826 -20.72446 -19.43275 -19.22970 -18.66818 -18.09678 -17.20027 -16.64658 -16.62430 -16.52227 -16.12094 -15.94219 -15.49864 -15.20614 -14.96403 -14.69644 -14.56580 -14.36168 -14.12748 -13.91169 -13.72786 -13.49604 -13.29571 -12.93243 -12.88404 -12.66499 -12.53513 -12.32002 -12.27756 -12.19465 -11.79232 -11.66061 -11.62394 -11.14341 -10.95236 -10.83215 -10.62734 -10.51059 -10.04047 -9.41279 -8.78060 -8.12033 -6.29240 -0.39459 0.38456 1.03581 1.38852 1.40103 1.52452 2.23874 2.35521 2.39800 2.43143 2.89892 3.16414 3.58675 3.69950 3.90871 3.96073 4.11671 4.19855 4.21754 4.27948 4.34327 4.41279 4.43400 4.48725 4.61357 4.67528 4.75855 4.78217 4.82092 4.87398 5.02181 5.07980 5.11328 5.16014 5.26752 5.28826 5.30452 5.34947 5.49277 5.55418 5.67079 5.68665 5.71572 5.89868 6.00166 6.32767 6.40886 6.72117 6.84537 7.35749 7.41707 8.91828 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.027361 B = 0.002468 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.114876 B =11343.041637 C =12140.078899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.130 3.870 4 C -0.165 4.165 5 C -0.060 4.060 6 C -0.126 4.126 7 C -0.013 4.013 8 C -0.217 4.217 9 C 0.524 3.476 10 O -0.606 6.606 11 N -0.606 5.606 12 C 0.100 3.900 13 C -0.127 4.127 14 C -0.106 4.106 15 C 0.038 3.962 16 H -0.015 1.015 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.917 5.917 21 Si 0.959 3.041 22 H -0.259 1.259 23 H -0.282 1.282 24 H -0.283 1.283 25 C 0.124 3.876 26 C -0.060 4.060 27 C -0.210 4.210 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.165 0.835 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.107 0.893 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.259 0.741 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.150 0.850 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 -21.542 -4.325 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.084 3.916 4 C -0.184 4.184 5 C -0.078 4.078 6 C -0.126 4.126 7 C -0.033 4.033 8 C -0.237 4.237 9 C 0.317 3.683 10 O -0.490 6.490 11 N -0.337 5.337 12 C -0.021 4.021 13 C -0.164 4.164 14 C -0.144 4.144 15 C 0.019 3.981 16 H 0.003 0.997 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.193 4.193 20 N -0.556 5.556 21 Si 0.785 3.215 22 H -0.183 1.183 23 H -0.208 1.208 24 H -0.209 1.209 25 C 0.002 3.998 26 C -0.078 4.078 27 C -0.228 4.228 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.182 0.818 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.167 0.833 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.485 -21.713 -4.365 27.024 hybrid contribution 1.053 1.342 0.213 1.719 sum -14.433 -20.371 -4.152 25.308 Atomic orbital electron populations 1.23401 0.76194 1.05734 1.02546 1.86026 1.23711 1.26775 1.88029 1.19470 0.92645 0.84847 0.94635 1.20555 0.91832 0.98925 1.07076 1.21386 1.00775 0.90591 0.95017 1.18941 0.94031 0.91982 1.07630 1.22311 0.99655 0.91131 0.90206 1.22976 1.01680 0.89989 1.09023 1.19093 0.86610 0.86211 0.76401 1.90772 1.16625 1.88279 1.53347 1.48429 1.08277 1.06674 1.70287 1.22119 0.77724 1.03098 0.99156 1.21926 1.01580 0.95426 0.97515 1.21526 0.95194 0.96765 1.00929 1.18914 0.92927 0.94180 0.92110 0.99658 1.21566 0.92042 0.93049 1.50612 0.91859 1.25944 0.97905 1.00765 0.94659 1.70108 1.03520 1.31336 1.50667 0.85483 0.78488 0.80137 0.77430 1.18272 1.20818 1.20899 1.21692 0.99421 0.80976 0.97721 1.21465 0.93136 0.98575 0.94608 1.21436 1.01509 0.91333 1.08549 0.91477 0.91396 0.86334 0.83735 0.83781 0.86689 0.81793 0.86803 0.90185 0.93026 0.87485 0.92913 0.92444 0.93166 0.94744 0.90796 0.83284 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.23 10.49 -90.63 -0.95 -6.18 16 3 C 0.13 2.27 6.70 22.64 0.15 2.42 16 4 C -0.17 -3.00 9.97 22.32 0.22 -2.78 16 5 C -0.06 -1.18 9.79 22.55 0.22 -0.96 16 6 C -0.13 -2.76 5.87 -20.14 -0.12 -2.87 16 7 C -0.01 -0.36 9.45 23.82 0.23 -0.14 16 8 C -0.22 -6.43 8.74 23.61 0.21 -6.22 16 9 C 0.52 22.35 7.61 86.33 0.66 23.01 16 10 O -0.61 -32.46 15.68 -4.42 -0.07 -32.53 16 11 N -0.61 -25.13 2.97 -824.08 -2.45 -27.58 16 12 C 0.10 2.83 6.35 86.36 0.55 3.38 16 13 C -0.13 -3.67 6.08 30.67 0.19 -3.48 16 14 C -0.11 -4.13 5.11 30.62 0.16 -3.97 16 15 C 0.04 1.96 2.25 -11.46 -0.03 1.93 16 16 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 17 C -0.53 -29.98 8.56 25.60 0.22 -29.76 16 18 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 19 C 0.01 0.36 5.31 84.65 0.45 0.81 16 20 N -0.92 -57.25 11.40 21.45 0.24 -57.00 16 21 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 25 C 0.12 6.44 5.39 86.36 0.47 6.91 16 26 C -0.06 -1.05 9.40 22.55 0.21 -0.84 16 27 C -0.21 -3.17 9.01 22.32 0.20 -2.96 16 28 H 0.07 0.38 7.65 -2.39 -0.02 0.36 16 29 H 0.07 0.37 7.65 -2.39 -0.02 0.35 16 30 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 33 H 0.12 3.64 7.53 -2.91 -0.02 3.62 16 34 H 0.17 3.39 3.86 -2.91 -0.01 3.38 16 35 H 0.11 2.27 5.30 -2.39 -0.01 2.25 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 4.59 5.16 -2.39 -0.01 4.58 16 44 H 0.15 1.96 6.16 -2.91 -0.02 1.94 16 45 H 0.16 1.44 6.27 -2.91 -0.02 1.42 16 Total: -1.00 -79.24 363.66 4.89 -74.35 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.99 Total: 16.10 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 5.09 Total: -14.30 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -2.21 Total: -84.58 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.02 Total: -38.71 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -79.24 4.89 -74.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855258985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.692 kcal (2) G-P(sol) polarization free energy of solvation -79.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds