Wall clock time and date at job start Tue Mar 31 2020 11:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35733 * 116.99902 * 2 1 4 4 C 1.39026 * 119.88729 * 359.71984 * 3 2 1 5 5 C 1.37659 * 120.11144 * 179.72099 * 4 3 2 6 6 C 1.39973 * 119.88652 * 0.57915 * 5 4 3 7 7 C 1.47005 * 120.11382 * 179.67691 * 6 5 4 8 8 C 1.34976 * 119.99943 * 43.43437 * 7 6 5 9 9 C 1.46257 * 119.99927 * 10.37289 * 8 7 6 10 10 O 1.21717 * 120.00283 * 6.62265 * 9 8 7 11 11 N 1.34777 * 120.00068 * 186.61447 * 9 8 7 12 12 C 1.46924 * 120.62997 * 354.93510 * 11 9 8 13 13 C 1.53198 * 108.77772 * 126.36597 * 12 11 9 14 14 C 1.53038 * 109.31214 * 54.63279 * 13 12 11 15 15 C 1.53038 * 109.53870 * 298.63657 * 14 13 12 16 16 H 1.09001 * 109.49836 * 301.41474 * 15 14 13 17 17 C 1.50699 * 109.49971 * 181.34713 * 15 14 13 18 18 H 1.08002 * 119.99860 * 0.02562 * 17 15 14 19 19 C 1.37875 * 120.00374 * 179.97438 * 17 15 14 20 20 N 1.31517 * 119.99759 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99923 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46949 * 90.00406 * 21 19 17 23 23 H 1.48506 * 109.46730 * 210.00058 * 21 19 17 24 24 H 1.48495 * 109.47369 * 330.00183 * 21 19 17 25 25 C 1.46925 * 120.63324 * 174.64879 * 11 9 8 26 26 C 1.39970 * 119.77474 * 359.69535 * 6 5 4 27 27 C 1.37661 * 119.88387 * 0.02562 * 26 6 5 28 28 H 1.08999 * 109.46884 * 60.00327 * 1 2 3 29 29 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47705 * 300.00165 * 1 2 3 31 31 H 1.07998 * 119.93916 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.05669 * 180.27875 * 5 4 3 33 33 H 1.07997 * 120.00352 * 223.43803 * 7 6 5 34 34 H 1.07996 * 120.00275 * 190.38074 * 8 7 6 35 35 H 1.09000 * 109.59051 * 246.15151 * 12 11 9 36 36 H 1.09002 * 109.58828 * 6.43489 * 12 11 9 37 37 H 1.09003 * 109.49669 * 174.58892 * 13 12 11 38 38 H 1.09005 * 109.49479 * 294.68290 * 13 12 11 39 39 H 1.08998 * 109.45991 * 58.65557 * 14 13 12 40 40 H 1.09000 * 109.45757 * 178.61876 * 14 13 12 41 41 H 0.96998 * 119.99839 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58417 * 353.42181 * 25 11 9 43 43 H 1.09003 * 109.58809 * 113.84709 * 25 11 9 44 44 H 1.07997 * 120.05671 * 180.02562 * 26 6 5 45 45 H 1.08002 * 119.94256 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2857 2.3739 -0.0059 5 6 1.9058 3.6029 -0.0001 6 6 3.3035 3.6789 -0.0006 7 6 3.9709 4.9887 -0.0016 8 6 3.5212 5.9759 0.8016 9 6 2.5245 5.6839 1.8314 10 8 2.1895 4.5334 2.0454 11 7 1.9770 6.6887 2.5435 12 6 2.4497 8.0696 2.3753 13 6 1.2486 8.9672 2.0613 14 6 0.1887 8.7941 3.1517 15 6 -0.2881 7.3401 3.1757 16 1 -0.6953 7.0745 2.2001 17 6 -1.3553 7.1780 4.2273 18 1 -1.6635 8.0271 4.8193 19 6 -1.9392 5.9460 4.4329 20 7 -1.5643 4.9121 3.7116 21 14 -3.2626 5.7454 5.7359 22 1 -4.5950 5.9989 5.1312 23 1 -3.2193 4.3630 6.2766 24 1 -3.0256 6.7147 6.8356 25 6 0.8918 6.4249 3.4982 26 6 4.0635 2.5035 -0.0004 27 6 3.4337 1.2794 -0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2074 2.3141 -0.0100 32 1 1.3149 4.5069 -0.0002 33 1 4.8209 5.1612 -0.6450 34 1 3.8972 6.9814 0.6838 35 1 2.9274 8.4070 3.2951 36 1 3.1656 8.1133 1.5545 37 1 1.5708 10.0080 2.0291 38 1 0.8269 8.6863 1.0962 39 1 0.6183 9.0514 4.1198 40 1 -0.6566 9.4500 2.9437 41 1 -1.9753 4.0455 3.8560 42 1 0.5781 5.3842 3.4165 43 1 1.2398 6.6253 4.5115 44 1 5.1422 2.5569 -0.0003 45 1 4.0192 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855258987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:16 Heat of formation + Delta-G solvation = -19.405476 kcal Electronic energy + Delta-G solvation = -26704.540159 eV Core-core repulsion = 23074.090433 eV Total energy + Delta-G solvation = -3630.449726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.01429 -39.32608 -37.53607 -36.38570 -33.47652 -33.05273 -31.75649 -30.72790 -29.89021 -28.94197 -27.02651 -25.24726 -24.84591 -23.02862 -22.04116 -21.78506 -20.88422 -19.17267 -18.02042 -17.78090 -17.13254 -16.21182 -15.82147 -15.52996 -15.39965 -14.64159 -14.55677 -14.24992 -13.95972 -13.74308 -13.62002 -13.41208 -13.00550 -12.82405 -12.66107 -12.51971 -12.26799 -12.03809 -11.86852 -11.80335 -11.32031 -11.07808 -10.98600 -10.81811 -10.53236 -10.50523 -10.33381 -10.24154 -9.89346 -9.37003 -9.25449 -9.11922 -8.87724 -8.50513 -8.43066 -7.63325 -7.39040 -6.02083 -4.10177 1.07125 1.80234 2.23040 3.28586 3.36343 3.38630 3.47827 3.84492 3.92537 4.18137 4.41143 4.93603 5.02298 5.11496 5.20681 5.27893 5.28714 5.30108 5.35824 5.51530 5.56576 5.57746 5.65189 5.68485 5.75112 6.00903 6.01377 6.16974 6.22403 6.29787 6.31422 6.44754 6.60016 6.62584 6.69363 6.77382 6.86954 6.96479 6.98382 7.04903 7.18985 7.33596 7.63968 7.64683 7.87158 7.99616 8.31761 8.38366 8.91600 8.99588 9.55330 11.03037 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.004866 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.731575 B = 5752.733853 C = 7958.704819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.322 6.322 3 C 0.136 3.864 4 C -0.214 4.214 5 C 0.021 3.979 6 C -0.112 4.112 7 C -0.030 4.030 8 C -0.214 4.214 9 C 0.528 3.472 10 O -0.526 6.526 11 N -0.601 5.601 12 C 0.106 3.894 13 C -0.134 4.134 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.027 0.973 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.113 3.887 26 C -0.064 4.064 27 C -0.174 4.174 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.262 0.738 42 H 0.123 0.877 43 H 0.039 0.961 44 H 0.123 0.877 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.152 -0.967 -9.651 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.236 6.236 3 C 0.091 3.909 4 C -0.233 4.233 5 C 0.002 3.998 6 C -0.112 4.112 7 C -0.050 4.050 8 C -0.235 4.235 9 C 0.318 3.682 10 O -0.405 6.405 11 N -0.332 5.332 12 C -0.017 4.017 13 C -0.172 4.172 14 C -0.149 4.149 15 C 0.021 3.979 16 H 0.045 0.955 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.517 5.517 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.007 4.007 26 C -0.082 4.082 27 C -0.193 4.193 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.057 0.943 44 H 0.141 0.859 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.991 -1.957 -9.516 13.936 hybrid contribution -1.011 0.283 0.927 1.401 sum 8.981 -1.674 -8.589 12.539 Atomic orbital electron populations 1.23042 0.78426 1.03440 1.01897 1.85956 1.21432 1.27524 1.88684 1.19157 0.92263 0.83883 0.95613 1.21062 0.99981 0.92187 1.10064 1.20881 0.93071 0.96853 0.88945 1.18725 0.93278 0.92566 1.06623 1.22227 0.95906 0.91579 0.95257 1.23249 1.01966 0.99612 0.98634 1.18342 0.81943 0.85417 0.82532 1.90873 1.62080 1.19504 1.68028 1.48488 1.36867 1.06125 1.41748 1.21706 0.96418 0.82831 1.00779 1.21950 0.96822 0.97939 1.00479 1.21625 0.96496 1.00307 0.96436 1.18887 0.92462 0.88773 0.97736 0.95484 1.21077 1.19969 0.95092 1.19743 0.92417 1.25035 0.96762 0.96078 0.96066 1.69883 1.41955 1.00446 1.39454 0.86609 0.82114 0.77401 0.81982 1.20700 1.21205 1.19896 1.22163 0.84378 1.05907 0.88245 1.20853 0.98866 0.90865 0.97635 1.20076 0.91114 0.98169 1.09948 0.92758 0.88639 0.92112 0.85667 0.86395 0.85376 0.85293 0.92209 0.90844 0.92300 0.92174 0.93231 0.93087 0.92781 0.85916 0.94274 0.85903 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.98 10.49 -18.91 -0.20 -5.18 16 3 C 0.14 2.26 6.70 -39.00 -0.26 2.00 16 4 C -0.21 -3.77 9.01 -39.50 -0.36 -4.12 16 5 C 0.02 0.38 6.54 -39.14 -0.26 0.12 16 6 C -0.11 -1.78 4.57 -105.05 -0.48 -2.27 16 7 C -0.03 -0.40 9.81 -37.19 -0.36 -0.77 16 8 C -0.21 -3.14 9.25 -37.52 -0.35 -3.48 16 9 C 0.53 10.39 6.65 -13.04 -0.09 10.31 16 10 O -0.53 -12.24 11.47 5.17 0.06 -12.18 16 11 N -0.60 -11.91 2.98 -174.73 -0.52 -12.43 16 12 C 0.11 1.63 6.35 -3.71 -0.02 1.61 16 13 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 14 C -0.11 -2.18 5.11 -26.69 -0.14 -2.32 16 15 C 0.04 0.99 2.24 -91.88 -0.21 0.78 16 16 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 17 C -0.52 -13.98 8.56 -34.44 -0.29 -14.28 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 20 N -0.88 -25.21 11.39 55.43 0.63 -24.57 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.11 2.73 5.37 -3.93 -0.02 2.71 16 26 C -0.06 -0.93 9.79 -39.14 -0.38 -1.31 16 27 C -0.17 -2.65 9.97 -39.50 -0.39 -3.04 16 28 H 0.05 0.60 7.64 -51.93 -0.40 0.20 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.80 7.66 -51.93 -0.40 0.41 16 31 H 0.13 2.11 6.27 -52.49 -0.33 1.78 16 32 H 0.12 2.29 6.94 -52.49 -0.36 1.92 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.47 5.86 -52.49 -0.31 1.16 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.89 5.30 -51.93 -0.28 0.62 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.12 3.45 5.15 -51.93 -0.27 3.18 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -31.75 358.47 -9.05 -40.80 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.53 Total: 5.38 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.88 Total: -13.36 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.11 Total: -37.00 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.14 Total: -17.36 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.75 -9.05 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855258987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.396 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds