Wall clock time and date at job start Tue Mar 31 2020 11:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35733 * 116.99902 * 2 1 4 4 C 1.39026 * 119.88729 * 359.71984 * 3 2 1 5 5 C 1.37659 * 120.11144 * 179.72099 * 4 3 2 6 6 C 1.39973 * 119.88652 * 0.57915 * 5 4 3 7 7 C 1.47005 * 120.11382 * 179.67691 * 6 5 4 8 8 C 1.34976 * 119.99943 * 43.43437 * 7 6 5 9 9 C 1.46257 * 119.99927 * 10.37289 * 8 7 6 10 10 O 1.21717 * 120.00283 * 6.62265 * 9 8 7 11 11 N 1.34777 * 120.00068 * 186.61447 * 9 8 7 12 12 C 1.46924 * 120.62997 * 354.93510 * 11 9 8 13 13 C 1.53198 * 108.77772 * 126.36597 * 12 11 9 14 14 C 1.53038 * 109.31214 * 54.63279 * 13 12 11 15 15 C 1.53038 * 109.53870 * 298.63657 * 14 13 12 16 16 H 1.09001 * 109.49836 * 301.41474 * 15 14 13 17 17 C 1.50699 * 109.49971 * 181.34713 * 15 14 13 18 18 H 1.08002 * 119.99860 * 0.02562 * 17 15 14 19 19 C 1.37875 * 120.00374 * 179.97438 * 17 15 14 20 20 N 1.31517 * 119.99759 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99923 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46949 * 90.00406 * 21 19 17 23 23 H 1.48506 * 109.46730 * 210.00058 * 21 19 17 24 24 H 1.48495 * 109.47369 * 330.00183 * 21 19 17 25 25 C 1.46925 * 120.63324 * 174.64879 * 11 9 8 26 26 C 1.39970 * 119.77474 * 359.69535 * 6 5 4 27 27 C 1.37661 * 119.88387 * 0.02562 * 26 6 5 28 28 H 1.08999 * 109.46884 * 60.00327 * 1 2 3 29 29 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47705 * 300.00165 * 1 2 3 31 31 H 1.07998 * 119.93916 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.05669 * 180.27875 * 5 4 3 33 33 H 1.07997 * 120.00352 * 223.43803 * 7 6 5 34 34 H 1.07996 * 120.00275 * 190.38074 * 8 7 6 35 35 H 1.09000 * 109.59051 * 246.15151 * 12 11 9 36 36 H 1.09002 * 109.58828 * 6.43489 * 12 11 9 37 37 H 1.09003 * 109.49669 * 174.58892 * 13 12 11 38 38 H 1.09005 * 109.49479 * 294.68290 * 13 12 11 39 39 H 1.08998 * 109.45991 * 58.65557 * 14 13 12 40 40 H 1.09000 * 109.45757 * 178.61876 * 14 13 12 41 41 H 0.96998 * 119.99839 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58417 * 353.42181 * 25 11 9 43 43 H 1.09003 * 109.58809 * 113.84709 * 25 11 9 44 44 H 1.07997 * 120.05671 * 180.02562 * 26 6 5 45 45 H 1.08002 * 119.94256 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2857 2.3739 -0.0059 5 6 1.9058 3.6029 -0.0001 6 6 3.3035 3.6789 -0.0006 7 6 3.9709 4.9887 -0.0016 8 6 3.5212 5.9759 0.8016 9 6 2.5245 5.6839 1.8314 10 8 2.1895 4.5334 2.0454 11 7 1.9770 6.6887 2.5435 12 6 2.4497 8.0696 2.3753 13 6 1.2486 8.9672 2.0613 14 6 0.1887 8.7941 3.1517 15 6 -0.2881 7.3401 3.1757 16 1 -0.6953 7.0745 2.2001 17 6 -1.3553 7.1780 4.2273 18 1 -1.6635 8.0271 4.8193 19 6 -1.9392 5.9460 4.4329 20 7 -1.5643 4.9121 3.7116 21 14 -3.2626 5.7454 5.7359 22 1 -4.5950 5.9989 5.1312 23 1 -3.2193 4.3630 6.2766 24 1 -3.0256 6.7147 6.8356 25 6 0.8918 6.4249 3.4982 26 6 4.0635 2.5035 -0.0004 27 6 3.4337 1.2794 -0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2074 2.3141 -0.0100 32 1 1.3149 4.5069 -0.0002 33 1 4.8209 5.1612 -0.6450 34 1 3.8972 6.9814 0.6838 35 1 2.9274 8.4070 3.2951 36 1 3.1656 8.1133 1.5545 37 1 1.5708 10.0080 2.0291 38 1 0.8269 8.6863 1.0962 39 1 0.6183 9.0514 4.1198 40 1 -0.6566 9.4500 2.9437 41 1 -1.9753 4.0455 3.8560 42 1 0.5781 5.3842 3.4165 43 1 1.2398 6.6253 4.5115 44 1 5.1422 2.5569 -0.0003 45 1 4.0192 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855258987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:16 Heat of formation + Delta-G solvation = -38.087422 kcal Electronic energy + Delta-G solvation = -26705.350269 eV Core-core repulsion = 23074.090433 eV Total energy + Delta-G solvation = -3631.259836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.33802 -40.69793 -38.89382 -37.83916 -35.31206 -34.32912 -33.41071 -31.98094 -31.59330 -30.18308 -28.17712 -27.13589 -26.35171 -24.39409 -23.44826 -23.19961 -22.25172 -20.77242 -19.33046 -19.12983 -18.58295 -18.10358 -17.07853 -16.86823 -16.68138 -16.54163 -15.97934 -15.68127 -15.30949 -15.17207 -14.90913 -14.63961 -14.50675 -14.32670 -14.20845 -13.95146 -13.65625 -13.45643 -13.43716 -12.91496 -12.86357 -12.68812 -12.50658 -12.30214 -12.26441 -12.08783 -11.81670 -11.68088 -11.60425 -11.07503 -10.94288 -10.57222 -10.50411 -10.43582 -9.82960 -9.22588 -8.63880 -8.13422 -6.30003 -0.12276 0.54273 1.01701 1.36508 1.37904 1.48185 2.33449 2.35956 2.42978 2.52775 2.93295 3.15197 3.83107 3.84822 3.89765 3.98616 4.13593 4.19980 4.26227 4.29052 4.33857 4.41990 4.52489 4.54820 4.61829 4.64579 4.78759 4.80647 4.86081 4.89701 5.08305 5.10255 5.15364 5.23375 5.27058 5.30700 5.37008 5.45953 5.53462 5.54646 5.68270 5.78864 5.86999 5.90659 6.00704 6.32741 6.42696 6.81019 6.82742 7.39283 7.49923 8.89254 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.004866 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.731575 B = 5752.733853 C = 7958.704819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.330 6.330 3 C 0.121 3.879 4 C -0.237 4.237 5 C 0.000 4.000 6 C -0.125 4.125 7 C -0.009 4.009 8 C -0.223 4.223 9 C 0.514 3.486 10 O -0.575 6.575 11 N -0.609 5.609 12 C 0.101 3.899 13 C -0.126 4.126 14 C -0.106 4.106 15 C 0.040 3.960 16 H -0.015 1.015 17 C -0.537 4.537 18 H 0.060 0.940 19 C 0.011 3.989 20 N -0.912 5.912 21 Si 0.955 3.045 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.263 1.263 25 C 0.129 3.871 26 C -0.057 4.057 27 C -0.179 4.179 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.041 0.959 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.185 0.815 34 H 0.173 0.827 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.258 0.742 42 H 0.075 0.925 43 H 0.025 0.975 44 H 0.166 0.834 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.101 0.535 -10.510 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.244 6.244 3 C 0.076 3.924 4 C -0.256 4.256 5 C -0.019 4.019 6 C -0.126 4.126 7 C -0.028 4.028 8 C -0.243 4.243 9 C 0.306 3.694 10 O -0.458 6.458 11 N -0.340 5.340 12 C -0.020 4.020 13 C -0.164 4.164 14 C -0.144 4.144 15 C 0.021 3.979 16 H 0.003 0.997 17 C -0.575 4.575 18 H 0.078 0.922 19 C -0.188 4.188 20 N -0.550 5.550 21 Si 0.780 3.220 22 H -0.200 1.200 23 H -0.215 1.215 24 H -0.187 1.187 25 C 0.007 3.993 26 C -0.075 4.075 27 C -0.197 4.197 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.059 0.941 31 H 0.132 0.868 32 H 0.107 0.893 33 H 0.202 0.798 34 H 0.190 0.810 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.183 0.817 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.951 -0.405 -10.386 16.606 hybrid contribution -1.965 -0.249 1.173 2.302 sum 10.986 -0.654 -9.213 14.353 Atomic orbital electron populations 1.23234 0.77152 1.05394 1.01352 1.85936 1.22801 1.27008 1.88635 1.19395 0.93210 0.83741 0.96083 1.21109 0.99845 0.93114 1.11572 1.20790 0.94545 0.95742 0.90799 1.19117 0.92410 0.94976 1.06060 1.22736 0.96052 0.89361 0.94651 1.23267 1.01007 1.02115 0.97945 1.19340 0.82311 0.84618 0.83096 1.90859 1.63873 1.21612 1.69429 1.48512 1.35908 1.08565 1.41006 1.22070 0.96939 0.79789 1.03248 1.21912 0.95611 1.00704 0.98155 1.21520 0.97961 0.96453 0.98482 1.18804 0.92162 0.92265 0.94658 0.99676 1.21521 1.20716 0.95119 1.20178 0.92190 1.25863 0.98995 0.95862 0.98113 1.70090 1.43122 1.00654 1.41143 0.85604 0.79525 0.77223 0.79641 1.19965 1.21455 1.18678 1.21494 0.85990 1.03083 0.88771 1.21330 1.00815 0.89738 0.95586 1.20523 0.90569 0.99760 1.08876 0.91982 0.85343 0.94072 0.86810 0.89301 0.79821 0.81022 0.90792 0.86479 0.87828 0.93011 0.92782 0.93156 0.93345 0.90623 0.95628 0.81666 0.83447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 16 2 O -0.33 -10.44 10.49 -90.57 -0.95 -11.39 16 3 C 0.12 4.15 6.70 22.65 0.15 4.30 16 4 C -0.24 -9.05 9.01 22.32 0.20 -8.85 16 5 C 0.00 0.00 6.54 22.55 0.15 0.14 16 6 C -0.13 -3.87 4.57 -20.14 -0.09 -3.96 16 7 C -0.01 -0.20 9.81 23.82 0.23 0.03 16 8 C -0.22 -5.88 9.25 23.60 0.22 -5.66 16 9 C 0.51 20.44 6.65 86.33 0.57 21.01 16 10 O -0.58 -28.30 11.47 -4.40 -0.05 -28.35 16 11 N -0.61 -24.34 2.98 -824.92 -2.46 -26.80 16 12 C 0.10 2.81 6.35 86.37 0.55 3.36 16 13 C -0.13 -3.65 6.08 30.67 0.19 -3.46 16 14 C -0.11 -4.15 5.11 30.62 0.16 -3.99 16 15 C 0.04 2.06 2.24 -11.61 -0.03 2.03 16 16 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 17 C -0.54 -30.03 8.56 25.60 0.22 -29.81 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 19 C 0.01 0.64 5.31 84.65 0.45 1.08 16 20 N -0.91 -55.83 11.39 21.45 0.24 -55.59 16 21 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 25 C 0.13 6.58 5.37 86.22 0.46 7.04 16 26 C -0.06 -1.51 9.79 22.55 0.22 -1.29 16 27 C -0.18 -5.22 9.97 22.32 0.22 -5.00 16 28 H 0.06 1.47 7.64 -2.39 -0.02 1.45 16 29 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.04 1.20 7.66 -2.39 -0.02 1.18 16 31 H 0.11 4.35 6.27 -2.91 -0.02 4.34 16 32 H 0.09 3.80 6.94 -2.91 -0.02 3.78 16 33 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.17 2.94 5.86 -2.91 -0.02 2.93 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.12 2.25 5.30 -2.39 -0.01 2.23 16 37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.26 15.27 8.31 -92.71 -0.77 14.49 16 42 H 0.08 4.60 5.15 -2.39 -0.01 4.59 16 43 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 45 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -77.93 358.47 4.78 -73.14 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.98 Total: 23.39 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 4.99 Total: -21.31 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.21 Total: -82.39 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.00 Total: -39.74 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -77.93 4.78 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855258987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.056 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds