Wall clock time and date at job start Tue Mar 31 2020 11:28:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 C 1.53007 * 109.47363 * 53.62000 * 3 2 1
5 5 N 1.46497 * 109.47204 * 179.97438 * 4 3 2
6 6 C 1.46493 * 120.00227 * 269.99918 * 5 4 3
7 7 C 1.53008 * 109.47166 * 270.00091 * 6 5 4
8 8 O 1.42896 * 109.46853 * 64.99754 * 7 6 5
9 9 C 1.42899 * 113.99801 * 180.02562 * 8 7 6
10 10 C 1.34779 * 119.99929 * 89.99937 * 5 4 3
11 11 O 1.21282 * 119.99913 * 359.97438 * 10 5 4
12 12 C 1.50694 * 120.00074 * 180.02562 * 10 5 4
13 13 C 1.50697 * 109.47339 * 179.97438 * 12 10 5
14 14 C 1.37641 * 120.13047 * 264.99854 * 13 12 10
15 15 C 1.38614 * 120.25108 * 179.97438 * 14 13 12
16 16 C 1.38651 * 120.49947 * 0.02948 * 15 14 13
17 17 C 1.37597 * 120.25407 * 0.02562 * 16 15 14
18 18 C 1.40702 * 120.12779 * 84.72570 * 13 12 10
19 19 C 1.41392 * 120.24484 * 359.97438 * 18 13 12
20 20 H 1.08008 * 119.99829 * 333.89019 * 19 18 13
21 21 C 1.39936 * 120.00157 * 153.88802 * 19 18 13
22 22 N 1.30823 * 120.00218 * 343.72133 * 21 19 18
23 23 Si 1.86806 * 120.00088 * 163.72365 * 21 19 18
24 24 H 1.48497 * 109.46918 * 60.00210 * 23 21 19
25 25 H 1.48502 * 109.47252 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.46900 * 300.00273 * 23 21 19
27 27 H 4.44652 * 5.63378 * 180.02562 * 4 1 2
28 28 H 1.08994 * 109.47552 * 293.61597 * 3 2 1
29 29 H 1.09005 * 109.46892 * 173.61360 * 3 2 1
30 30 H 1.08994 * 109.47116 * 59.99330 * 4 3 2
31 31 H 1.09005 * 109.46594 * 299.99543 * 4 3 2
32 32 H 1.09007 * 109.47072 * 29.99768 * 6 5 4
33 33 H 1.08999 * 109.47530 * 149.99880 * 6 5 4
34 34 H 1.08996 * 109.47031 * 184.99794 * 7 6 5
35 35 H 1.08998 * 109.46850 * 304.99771 * 7 6 5
36 36 H 1.08997 * 109.47546 * 300.00237 * 9 8 7
37 37 H 1.09003 * 109.46979 * 60.00227 * 9 8 7
38 38 H 1.09003 * 109.47341 * 179.97438 * 9 8 7
39 39 H 1.09001 * 109.47013 * 299.99658 * 12 10 5
40 40 H 1.09002 * 109.47501 * 59.99861 * 12 10 5
41 41 H 1.08005 * 119.87545 * 0.02562 * 14 13 12
42 42 H 1.08001 * 119.74551 * 179.97438 * 15 14 13
43 43 H 1.08005 * 119.87756 * 180.02562 * 16 15 14
44 44 H 1.07991 * 120.13234 * 179.97438 * 17 16 15
45 45 H 0.97001 * 120.00340 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1565 -0.8547 -1.1614
5 7 4.6214 -0.8536 -1.1617
6 6 5.3530 0.1683 -1.9145
7 6 5.6081 -0.3318 -3.3379
8 8 4.3616 -0.4839 -4.0198
9 6 4.4880 -0.9497 -5.3649
10 6 5.2962 -1.7926 -0.4694
11 8 4.6906 -2.6384 0.1542
12 6 6.8032 -1.7911 -0.4692
13 6 7.3066 -2.9342 0.3740
14 6 7.6345 -2.7265 1.6945
15 6 8.0973 -3.7762 2.4725
16 6 8.2360 -5.0452 1.9315
17 6 7.9154 -5.2758 0.6135
18 6 7.4380 -4.2191 -0.1841
19 6 7.0983 -4.4457 -1.5378
20 1 6.3738 -3.8109 -2.0263
21 6 7.7007 -5.4925 -2.2445
22 7 8.7873 -6.0546 -1.7810
23 14 6.9534 -6.0873 -3.8500
24 1 6.9208 -4.9680 -4.8253
25 1 7.7751 -7.1965 -4.3975
26 1 5.5708 -6.5697 -3.6036
27 1 -1.0498 0.0000 -0.0004
28 1 3.0096 -0.4108 0.9415
29 1 3.0089 1.0222 -0.1143
30 1 2.7929 -0.4432 -2.1029
31 1 2.7936 -1.8762 -1.0471
32 1 4.7631 1.0842 -1.9515
33 1 6.3053 0.3690 -1.4238
34 1 6.2281 0.3892 -3.8706
35 1 6.1205 -1.2930 -3.2989
36 1 5.0849 -0.2419 -5.9400
37 1 4.9770 -1.9238 -5.3675
38 1 3.4983 -1.0391 -5.8129
39 1 7.1667 -1.9049 -1.4905
40 1 7.1656 -0.8492 -0.0574
41 1 7.5299 -1.7421 2.1264
42 1 8.3525 -3.6040 3.5077
43 1 8.5972 -5.8559 2.5470
44 1 8.0246 -6.2649 0.1940
45 1 9.2047 -6.7805 -2.2707
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000856390201.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:56
Heat of formation + Delta-G solvation = -13.097569 kcal
Electronic energy + Delta-G solvation = -26605.399074 eV
Core-core repulsion = 22975.222880 eV
Total energy + Delta-G solvation = -3630.176195 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-39.69351 -37.86016 -37.31335 -35.59701 -34.05808 -33.60102 -31.79824 -30.51838
-29.43327 -28.84074 -26.80787 -26.25779 -25.05036 -23.46160 -22.88209 -20.90635
-19.93855 -18.46449 -18.13109 -17.13664 -16.91461 -16.41127 -15.91386 -15.48962
-15.36206 -15.11056 -14.51764 -14.36865 -14.23091 -13.83545 -13.52860 -13.25366
-13.11266 -12.67235 -12.51323 -12.27289 -12.11161 -11.91541 -11.72079 -11.55155
-11.43209 -11.18505 -11.07862 -10.95116 -10.91889 -10.66663 -10.39305 -10.33609
-10.02752 -9.65987 -9.45820 -9.34505 -9.14374 -9.08624 -8.35046 -7.28236
-7.26381 -6.71699 -4.32201 2.75459 2.82652 2.88179 2.99602 3.05581
3.09028 3.29156 3.32229 3.44348 3.79552 3.93938 4.48457 4.67845
4.96542 5.03803 5.18647 5.24153 5.36152 5.37063 5.43049 5.44872
5.53077 5.62230 5.68064 5.76485 5.84927 5.94709 6.01774 6.05770
6.19030 6.22976 6.30690 6.44164 6.53691 6.81486 6.87764 7.10428
7.12004 7.32361 7.45041 7.64521 7.65980 7.81959 7.95993 8.09869
8.15913 8.34058 8.67098 8.85945 8.94073 9.04332 10.22400
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.010018 B = 0.005205 C = 0.004005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2794.330327 B = 5378.156557 C = 6988.810358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.172 4.172
3 C -0.030 4.030
4 C 0.127 3.873
5 N -0.620 5.620
6 C 0.115 3.885
7 C 0.036 3.964
8 O -0.387 6.387
9 C 0.032 3.968
10 C 0.515 3.485
11 O -0.514 6.514
12 C -0.070 4.070
13 C -0.181 4.181
14 C -0.081 4.081
15 C -0.239 4.239
16 C -0.107 4.107
17 C -0.159 4.159
18 C 0.130 3.870
19 C -0.456 4.456
20 H 0.072 0.928
21 C 0.078 3.922
22 N -0.796 5.796
23 Si 0.900 3.100
24 H -0.268 1.268
25 H -0.278 1.278
26 H -0.264 1.264
27 H 0.215 0.785
28 H 0.090 0.910
29 H 0.084 0.916
30 H 0.084 0.916
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.097 0.903
34 H 0.057 0.943
35 H 0.062 0.938
36 H 0.038 0.962
37 H 0.043 0.957
38 H 0.082 0.918
39 H 0.094 0.906
40 H 0.075 0.925
41 H 0.084 0.916
42 H 0.085 0.915
43 H 0.086 0.914
44 H 0.117 0.883
45 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.435 12.475 -5.153 14.953
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.172 4.172
3 C -0.068 4.068
4 C 0.004 3.996
5 N -0.355 5.355
6 C -0.009 4.009
7 C -0.042 4.042
8 O -0.306 6.306
9 C -0.065 4.065
10 C 0.304 3.696
11 O -0.388 6.388
12 C -0.109 4.109
13 C -0.183 4.183
14 C -0.100 4.100
15 C -0.258 4.258
16 C -0.126 4.126
17 C -0.178 4.178
18 C 0.128 3.872
19 C -0.486 4.486
20 H 0.090 0.910
21 C -0.139 4.139
22 N -0.421 5.421
23 Si 0.725 3.275
24 H -0.192 1.192
25 H -0.203 1.203
26 H -0.189 1.189
27 H 0.232 0.768
28 H 0.108 0.892
29 H 0.102 0.898
30 H 0.102 0.898
31 H 0.101 0.899
32 H 0.101 0.899
33 H 0.116 0.884
34 H 0.075 0.925
35 H 0.080 0.920
36 H 0.057 0.943
37 H 0.061 0.939
38 H 0.101 0.899
39 H 0.112 0.888
40 H 0.093 0.907
41 H 0.102 0.898
42 H 0.103 0.897
43 H 0.104 0.896
44 H 0.134 0.866
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -6.727 11.840 -4.784 14.433
hybrid contribution -0.194 -0.382 -1.010 1.097
sum -6.921 11.458 -5.795 14.587
Atomic orbital electron populations
1.24816 0.95866 1.01654 1.01449 1.23024 0.94354 0.99867 0.99998
1.19159 0.84683 1.01476 1.01505 1.21226 0.80066 1.01144 0.97156
1.48012 1.05812 1.30823 1.50869 1.21599 0.98301 0.91324 0.89631
1.23185 0.86518 1.01173 0.93343 1.87846 1.29618 1.87435 1.25695
1.22717 1.02254 0.98279 0.83240 1.21284 0.90948 0.79675 0.77651
1.90686 1.70248 1.36148 1.41673 1.20333 0.90014 0.98308 1.02285
1.19070 1.11521 0.93487 0.94232 1.20291 0.99491 0.96637 0.93534
1.20301 1.13123 0.94247 0.98139 1.20675 1.00730 0.95529 0.95657
1.21295 1.04783 0.99464 0.92271 1.17318 0.87876 0.89464 0.92592
1.19416 1.21127 1.12193 0.95844 0.90952 1.25846 0.93474 0.95190
0.99401 1.69809 1.14177 1.19912 1.38224 0.86498 0.80421 0.78989
0.81577 1.19232 1.20312 1.18852 0.76774 0.89186 0.89811 0.89759
0.89893 0.89902 0.88448 0.92504 0.91964 0.94319 0.93862 0.89942
0.88803 0.90673 0.89796 0.89698 0.89622 0.86554 0.90947
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.22 -2.60 19.25 29.55 0.57 -2.03 16
2 C -0.17 -2.30 13.34 -37.12 -0.50 -2.79 16
3 C -0.03 -0.40 6.03 -29.51 -0.18 -0.57 16
4 C 0.13 1.86 5.18 -4.04 -0.02 1.84 16
5 N -0.62 -9.39 2.44 -173.69 -0.42 -9.81 16
6 C 0.12 1.30 5.62 -4.04 -0.02 1.28 16
7 C 0.04 0.42 6.28 37.16 0.23 0.66 16
8 O -0.39 -5.05 9.53 -35.23 -0.34 -5.39 16
9 C 0.03 0.35 11.01 101.05 1.11 1.46 16
10 C 0.52 10.04 7.28 -10.99 -0.08 9.96 16
11 O -0.51 -12.40 15.61 5.56 0.09 -12.31 16
12 C -0.07 -1.34 3.73 -29.04 -0.11 -1.45 16
13 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16
14 C -0.08 -1.87 9.66 -39.66 -0.38 -2.25 16
15 C -0.24 -5.57 10.05 -39.29 -0.39 -5.97 16
16 C -0.11 -2.64 10.02 -39.66 -0.40 -3.03 16
17 C -0.16 -4.26 8.69 -38.87 -0.34 -4.60 16
18 C 0.13 3.47 5.56 -106.82 -0.59 2.87 16
19 C -0.46 -11.97 8.14 -37.75 -0.31 -12.27 16
20 H 0.07 1.86 6.67 -52.48 -0.35 1.51 16
21 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16
22 N -0.80 -20.48 10.96 55.55 0.61 -19.87 16
23 Si 0.90 18.90 29.59 -169.99 -5.03 13.87 16
24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16
25 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16
26 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16
27 H 0.22 1.71 7.80 -54.10 -0.42 1.28 16
28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16
29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
30 H 0.08 1.14 7.11 -51.93 -0.37 0.77 16
31 H 0.08 1.44 7.42 -51.93 -0.39 1.05 16
32 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16
33 H 0.10 0.94 6.44 -51.93 -0.33 0.61 16
34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
35 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16
36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
39 H 0.09 1.78 6.20 -51.93 -0.32 1.45 16
40 H 0.08 1.19 7.31 -51.93 -0.38 0.81 16
41 H 0.08 1.69 8.06 -52.48 -0.42 1.26 16
42 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16
43 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16
44 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16
45 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16
LS Contribution 380.74 15.07 5.74 5.74
Total: -1.00 -31.79 380.74 -7.94 -39.73
By element:
Atomic # 1 Polarization: 14.51 SS G_CDS: -6.63 Total: 7.88 kcal
Atomic # 6 Polarization: -17.88 SS G_CDS: -1.96 Total: -19.84 kcal
Atomic # 7 Polarization: -29.87 SS G_CDS: 0.19 Total: -29.68 kcal
Atomic # 8 Polarization: -17.45 SS G_CDS: -0.25 Total: -17.70 kcal
Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -31.79 -7.94 -39.73 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000856390201.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.628 kcal
(2) G-P(sol) polarization free energy of solvation -31.788 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.160 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.098 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds